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PDB: 2886 results

4YAR
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BU of 4yar by Molmil
2-Hydroxyethylphosphonate dioxygenase (HEPD) E176H
Descriptor: 2-hydroxyethylphosphonate dioxygenase, ACETATE ION, CADMIUM ION, ...
Authors:Chekan, J.R, Nair, S.K.
Deposit date:2015-02-17
Release date:2015-03-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Common Late-Stage Intermediate in Catalysis by 2-Hydroxyethyl-phosphonate Dioxygenase and Methylphosphonate Synthase.
J.Am.Chem.Soc., 137, 2015
3GCV
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BU of 3gcv by Molmil
Human P38 MAP Kinase in Complex with RL62
Descriptor: 1-{3-[(6-aminoquinazolin-4-yl)amino]phenyl}-3-[3-tert-butyl-1-(3-methylphenyl)-1H-pyrazol-5-yl]urea, Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Gruetter, C, Simard, J.R, Getlik, M, Rauh, D.
Deposit date:2009-02-22
Release date:2009-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Development of a fluorescent-tagged kinase assay system for the detection and characterization of allosteric kinase inhibitors.
J.Am.Chem.Soc., 131, 2009
3GJ3
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BU of 3gj3 by Molmil
Crystal structure of human RanGDP-Nup153ZnF2 complex
Descriptor: GTP-binding nuclear protein Ran, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Partridge, J.R, Schwartz, T.U.
Deposit date:2009-03-07
Release date:2009-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Crystallographic and Biochemical Analysis of the Ran-binding Zinc Finger Domain.
J.Mol.Biol., 391, 2009
3I0N
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BU of 3i0n by Molmil
Structure of the S. pombe Nbs1 FHA/BRCT-repeat domain
Descriptor: DNA repair and telomere maintenance protein nbs1, GLYCEROL
Authors:Clapperton, J.A, Lloyd, J, Chapman, J.R, Jackson, S.P, Smerdon, S.J.
Deposit date:2009-06-25
Release date:2009-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A supramodular FHA/BRCT-repeat architecture mediates Nbs1 adaptor function in response to DNA damage
Cell(Cambridge,Mass.), 139, 2009
3HUC
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BU of 3huc by Molmil
Human p38 MAP Kinase in Complex with RL40
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mitogen-activated protein kinase 14, N-[2-phenyl-4-(1H-pyrazol-3-ylamino)quinazolin-7-yl]prop-2-enamide, ...
Authors:Gruetter, C, Simard, J.R, Getlik, M, Rauh, D.
Deposit date:2009-06-13
Release date:2010-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fluorophore labeling of the glycine-rich loop as a method of identifying inhibitors that bind to active and inactive kinase conformations.
J.Am.Chem.Soc., 132, 2010
3HV7
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BU of 3hv7 by Molmil
Human p38 MAP Kinase in Complex with RL38
Descriptor: 1-[1-(3-aminophenyl)-3-tert-butyl-1H-pyrazol-5-yl]-3-naphthalen-1-ylurea, Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Gruetter, C, Simard, J.R, Getlik, M, Rauh, D.
Deposit date:2009-06-15
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Displacement assay for the detection of stabilizers of inactive kinase conformations.
J.Med.Chem., 53, 2010
6HEB
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BU of 6heb by Molmil
Influenza A Virus N9 Neuraminidase complex with Oseltamivir (Tern).
Descriptor: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Salinger, M.T, Hobbs, J.R, Murray, J.W, Laver, W.G, Kuhn, P, Garman, E.F.
Deposit date:2018-08-20
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site.
To Be Published
4YTA
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BU of 4yta by Molmil
BOND LENGTH ANALYSIS OF ASP, GLU AND HIS RESIDUES IN TRYPSIN AT 1.2A RESOLUTION
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Fisher, S.J, Helliwell, J.R, Blakeley, M.P, Cianci, M, McSweeny, S.
Deposit date:2015-03-17
Release date:2015-05-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Protonation-state determination in proteins using high-resolution X-ray crystallography: effects of resolution and completeness.
Acta Crystallogr. D Biol. Crystallogr., 68, 2012
6HFC
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BU of 6hfc by Molmil
Influenza A Virus N9 Neuraminidase Native (Tern).
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CARBON DIOXIDE, ...
Authors:Salinger, M.T, Hobbs, J.R, Murray, J.W, Laver, W.G, Kuhn, P, Garman, E.F.
Deposit date:2018-08-21
Release date:2018-08-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site. (In preparation)
To Be Published
6HFY
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BU of 6hfy by Molmil
Influenza A virus N6 neuraminidase complex with DANA (Duck/England/56).
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Salinger, M.T, Hobbs, J.R, Murray, J.W, Laver, W.G, Kuhn, P, Garman, E.F.
Deposit date:2018-08-22
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site. (In preparation)
To Be Published
3I3T
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BU of 3i3t by Molmil
Crystal structure of covalent ubiquitin-USP21 complex
Descriptor: ETHANAMINE, Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 21, ...
Authors:Neculai, D, Avvakumov, G.V, Walker, J.R, Xue, S, Butler-Cole, C, Weigelt, J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2009-06-30
Release date:2009-07-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:A strategy for modulation of enzymes in the ubiquitin system.
Science, 339, 2013
3I2V
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BU of 3i2v by Molmil
Crystal structure of human MOCS3 rhodanese-like domain
Descriptor: Adenylyltransferase and sulfurtransferase MOCS3
Authors:Bacik, J.P, Walker, J.R, Lopez, L, Li, Y, Weigelt, J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2009-06-29
Release date:2009-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of the human MOCS3 rhodanese-like domain
To be Published
6HG5
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BU of 6hg5 by Molmil
Influenza A virus N6 neuraminidase complex with Oseltamivir (Duck/England/56).
Descriptor: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Salinger, M.T, Hobbs, J.R, Murray, J.W, Laver, W.G, Kuhn, P, Garman, E.F.
Deposit date:2018-08-22
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site.
To Be Published
5IAZ
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BU of 5iaz by Molmil
The C-terminal domain of rice beta-galactosidase 1
Descriptor: beta-galactosidase 1
Authors:Rimlumduan, T, Hua, Y.-l, Tanaka, T, Ketudat-Cairns, J.R.
Deposit date:2016-02-22
Release date:2016-08-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of a plant beta-galactosidase C-terminal domain
Biochim.Biophys.Acta, 1864, 2016
6IRI
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BU of 6iri by Molmil
Crystal structure of the minor ferredoxin from Thermosynechococcus elongatus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin, SULFATE ION
Authors:Motomura, T, Shen, J.R, Umena, Y.
Deposit date:2018-11-13
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:An alternative plant-like cyanobacterial ferredoxin with unprecedented structural and functional properties.
Biochim Biophys Acta Bioenerg, 1860, 2019
3GF5
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BU of 3gf5 by Molmil
Crystal structure of the P21 R1-R7 N-terminal domain of murine MVP
Descriptor: GLYCEROL, Major vault protein
Authors:Querol-Audi, J, Casanas, A, Luque, D, Caston, J.R, Fita, I, Verdaguer, N.
Deposit date:2009-02-26
Release date:2009-11-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The mechanism of vault opening from the high resolution structure of the N-terminal repeats of MVP
Embo J., 28, 2009
3GJ8
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BU of 3gj8 by Molmil
Crystal structure of human RanGDP-Nup153ZnF34 complex
Descriptor: GTP-binding nuclear protein Ran, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Partridge, J.R, Schwartz, T.U.
Deposit date:2009-03-07
Release date:2009-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystallographic and Biochemical Analysis of the Ran-binding Zinc Finger Domain.
J.Mol.Biol., 391, 2009
4WPF
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BU of 4wpf by Molmil
Crystal structure of RORc in complex with a phenyl sulfonamide agonist
Descriptor: N-[4-(4-acetylpiperazin-1-yl)-2-fluorobenzyl]-N-cyclobutylbenzenesulfonamide, Nuclear receptor ROR-gamma, RHKILHRLLQEGSPS
Authors:Kiefer, J.R, Wallweber, H.A, de Leon Boenig, G, Hymowitz, S.G.
Deposit date:2014-10-18
Release date:2015-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Minor Structural Change to Tertiary Sulfonamide RORc Ligands Led to Opposite Mechanisms of Action.
Acs Med.Chem.Lett., 6, 2015
1NLS
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BU of 1nls by Molmil
CONCANAVALIN A AND ITS BOUND SOLVENT AT 0.94A RESOLUTION
Descriptor: CALCIUM ION, CONCANAVALIN A, MANGANESE (II) ION
Authors:Deacon, A.M, Gleichmann, T, Helliwell, J.R, Kalb(Gilboa), A.J.
Deposit date:1997-01-28
Release date:1997-11-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:The Structure of Concanavalin a and its Bound Solvent Determined with Small-Molecule Accuracy at 0.94 A Resolution
J.Chem.Soc.,Faraday Trans., 93, 1997
3J47
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BU of 3j47 by Molmil
Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid
Descriptor: 26S proteasome regulatory subunit RPN11, 26S proteasome regulatory subunit RPN12, 26S proteasome regulatory subunit RPN3, ...
Authors:Estrin, E, Lopez-Blanco, J.R, Chacon, P, Martin, A.
Deposit date:2013-06-27
Release date:2013-08-28
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Formation of an Intricate Helical Bundle Dictates the Assembly of the 26S Proteasome Lid.
Structure, 21, 2013
3J4A
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BU of 3j4a by Molmil
Structure of gp8 connector protein
Descriptor: Head-to-tail joining protein
Authors:Cuervo, A, Pulido-Cid, M, Chagoyen, M, Arranz, R, Gonzalez-Garcia, V.A, Garcia-Doval, C, Caston, J.R, Valpuesta, J.M, van Raaij, M.J, Martin-Benito, J, Carrascosa, J.L.
Deposit date:2013-07-09
Release date:2013-08-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural characterization of the bacteriophage t7 tail machinery.
J.Biol.Chem., 288, 2013
3J3Y
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BU of 3j3y by Molmil
Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers)
Descriptor: capsid protein
Authors:Perilla, J.R, Zhao, G, Zhang, P, Schulten, K.J.
Deposit date:2013-05-06
Release date:2013-05-29
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013
6HG0
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BU of 6hg0 by Molmil
Influenza A Virus N9 Neuraminidase complex with NANA (Tern/Australia).
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Salinger, M.T, Hobbs, J.R, Murray, J.W, Laver, W.G, Kuhn, P, Garman, E.F.
Deposit date:2018-08-22
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site. (In preparation)
To Be Published
5L3H
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BU of 5l3h by Molmil
Re-refinement of 4dd4; cisplatin coordination chemistry determination at hen egg white lysozyme His15 with standard uncertainties
Descriptor: AMMONIA, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Helliwell, J.R, Tanley, S.W.M.
Deposit date:2016-05-06
Release date:2016-06-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cisplatin coordination chemistry determination at hen egg white lysozyme His15 with ligand distances and angles, and their standard uncertainties, and also reporting a split occupancy effect
ArXiv, 2016
3J4F
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BU of 3j4f by Molmil
Structure of HIV-1 capsid protein by cryo-EM
Descriptor: capsid protein
Authors:Zhao, G, Perilla, J.R, Meng, X, Schulten, K, Zhang, P.
Deposit date:2013-07-11
Release date:2013-07-24
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497, 2013

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