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PDB: 5173 results

7N65
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Complex structure of HIV superinfection Fab QA013.2 and BG505.SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp41, ...
Authors:Mangala Prasad, V, Shipley, M.M, Overbaugh, J.M, Lee, K.K.
Deposit date:2021-06-07
Release date:2021-07-28
Method:ELECTRON MICROSCOPY (4.15 Å)
Cite:Functional development of a V3/glycan-specific broadly neutralizing antibody isolated from a case of HIV superinfection.
Elife, 10, 2021
7XD6
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The Tet-S2 state with a pseudoknotted 4-way junction of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Descriptor: MAGNESIUM ION, SPERMIDINE, The Tet-S2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 30nt 3'/5'-exon (5'-exon), ...
Authors:Luo, B, Zhang, C, Ling, X, Mukherjee, S, Jia, G, Xie, J, Jia, X, Liu, L, Baulin, E.F, Luo, Y, Jiang, L, Dong, H, Wei, X, Bujnicki, J.M, Su, Z.
Deposit date:2022-03-26
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Cryo-EM reveals dynamics of Tetrahymena group I intron self-splicing
Nat Catal, 2023
7XD5
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The Tet-S2 state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Descriptor: MAGNESIUM ION, SPERMIDINE, The Tet-S2 state molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 30nt 3'/5'-exon (5'-exon), ...
Authors:Luo, B, Zhang, C, Ling, X, Mukherjee, S, Jia, G, Xie, J, Jia, X, Liu, L, Baulin, E.F, Luo, Y, Jiang, L, Dong, H, Wei, X, Bujnicki, J.M, Su, Z.
Deposit date:2022-03-26
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Cryo-EM reveals dynamics of Tetrahymena group I intron self-splicing
Nat Catal, 2023
7XD4
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The intermediate pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Descriptor: Co-transcriptional folded wild-type Tetrahymena group I intron with 6nt 3'/5'-exon, MAGNESIUM ION
Authors:Luo, B, Zhang, C, Ling, X, Mukherjee, S, Jia, G, Xie, J, Jia, X, Liu, L, Baulin, E.F, Luo, Y, Jiang, L, Dong, H, Wei, X, Bujnicki, J.M, Su, Z.
Deposit date:2022-03-26
Release date:2023-03-29
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Cryo-EM reveals dynamics of Tetrahymena group I intron self-splicing
Nat Catal, 2023
7XD3
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The relaxed pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Descriptor: MAGNESIUM ION, The relaxed pre-Tet-S1 state molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Authors:Luo, B, Zhang, C, Ling, X, Mukherjee, S, Jia, G, Xie, J, Jia, X, Liu, L, Baulin, E.F, Luo, Y, Jiang, L, Dong, H, Wei, X, Bujnicki, J.M, Su, Z.
Deposit date:2022-03-26
Release date:2023-03-29
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Cryo-EM reveals dynamics of Tetrahymena group I intron self-splicing
Nat Catal, 2023
7XD7
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The pre-Tet-C state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Descriptor: MAGNESIUM ION, SPERMIDINE, The pre-Tet-C state molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Authors:Luo, B, Zhang, C, Ling, X, Mukherjee, S, Jia, G, Xie, J, Jia, X, Liu, L, Baulin, E.F, Luo, Y, Jiang, L, Dong, H, Wei, X, Bujnicki, J.M, Su, Z.
Deposit date:2022-03-26
Release date:2023-03-29
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Cryo-EM reveals dynamics of Tetrahymena group I intron self-splicing
Nat Catal, 2023
7WD4
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Crystal structure of the Ilheus virus helicase: implications for enzyme function and drug design
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, NS3 helicase
Authors:Wang, D.P, Wang, M.Y, Zhou, X, Wang, W.M, Cao, J.M.
Deposit date:2021-12-21
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of the Ilheus virus helicase: implications for enzyme function and drug design
To Be Published
7UXV
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human triosephosphate isomerase mutant G122R
Descriptor: 2-PHOSPHOGLYCOLIC ACID, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Romero, J.M.
Deposit date:2022-05-06
Release date:2023-05-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:human triosephosphate isomerase mutant G122R
To Be Published
7UXB
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Human triosephosphate isomerase mutant G122R
Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Triosephosphate isomerase
Authors:Romero, J.M.
Deposit date:2022-05-05
Release date:2023-05-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human triosephosphate isomerase mutant G122R
To Be Published
7YX3
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Structure of the Mimivirus genomic fibre in its compact 6-start helix form
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Putative GMC-type oxidoreductase
Authors:Villalta, A, Schmitt, A, Estrozi, L.F, Quemin, E.R.J, Alempic, J.M, Lartigue, A, Prazak, V, Belmudes, L, Vasishtan, D, Colmant, A.M.G, Honore, F.A, Coute, Y, Grunewald, K, Abergel, C.
Deposit date:2022-02-15
Release date:2022-08-10
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (4 Å)
Cite:The giant mimivirus 1.2 Mb genome is elegantly organized into a 30-nm diameter helical protein shield.
Elife, 11, 2022
7YX4
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Structure of the Mimivirus genomic fibre in its compact 5-start helix form
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Putative glucose-methanol-choline oxidoreductase protein
Authors:Villalta, A, Schmitt, A, Estrozi, L.F, Quemin, E.R.J, Alempic, J.M, Lartigue, A, Prazak, V, Belmudes, L, Vasishtan, D, Colmant, A.M.G, Honore, F.A, Coute, Y, Grunewald, K, Abergel, C.
Deposit date:2022-02-15
Release date:2022-08-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The giant mimivirus 1.2 Mb genome is elegantly organized into a 30 nm diameter helical protein shield.
Elife, 11, 2022
7YX5
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Structure of the Mimivirus genomic fibre in its relaxed 5-start helix form
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Putative glucose-methanol-choline oxidoreductase protein
Authors:Villalta, A, Schmitt, A, Estrozi, L.F, Quemin, E.R.J, Alempic, J.M, Lartigue, A, Prazak, V, Belmudes, L, Vasishtan, D, Colmant, A.M.G, Honore, F.A, Coute, Y, Grunewald, K, Abergel, C.
Deposit date:2022-02-15
Release date:2022-08-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The giant mimivirus 1.2 Mb genome is elegantly organized into a 30 nm diameter helical protein shield.
Elife, 11, 2022
5BTF
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Crystal structure of a topoisomerase II complex
Descriptor: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(3S)-3-methylpiperazin-1-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
Deposit date:2015-06-03
Release date:2016-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BTD
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Crystal structure of a topoisomerase II complex
Descriptor: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(3S)-3-methylpiperazin-1-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
Deposit date:2015-06-03
Release date:2016-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.497 Å)
Cite:Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
9PCY
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BU of 9pcy by Molmil
HIGH-RESOLUTION SOLUTION STRUCTURE OF REDUCED FRENCH BEAN PLASTOCYANIN AND COMPARISON WITH THE CRYSTAL STRUCTURE OF POPLAR PLASTOCYANIN
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Moore, J.M, Lepre, C.A, Gippert, G.P, Chazin, W.J, Case, D.A, Wright, P.E.
Deposit date:1991-03-18
Release date:1993-10-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:High-resolution solution structure of reduced French bean plastocyanin and comparison with the crystal structure of poplar plastocyanin.
J.Mol.Biol., 221, 1991
5BS8
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BU of 5bs8 by Molmil
Crystal structure of a topoisomerase II complex
Descriptor: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
Deposit date:2015-06-01
Release date:2016-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BTI
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Crystal structure of a topoisomerase II complex
Descriptor: (3S)-9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
Deposit date:2015-06-03
Release date:2016-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5CE3
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The Yersinia YopO - actin complex with MgADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Lee, W.L, Singaravelu, P, Grimes, J.M, Robinson, R.C.
Deposit date:2015-07-06
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:The Yersinia YopO - actin complex with MgADP
To Be Published
5BVJ
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BU of 5bvj by Molmil
The molecular mode of action and species specificity of canakinumab, a human monoclonal antibody neutralizing IL-1beta
Descriptor: canakinumab Fab heavy-chain, canakinumab Fab light-chain
Authors:Rondeau, J.M.
Deposit date:2015-06-05
Release date:2015-09-02
Last modified:2020-03-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:The molecular mode of action and species specificity of canakinumab, a human monoclonal antibody neutralizing IL-1 beta.
Mabs, 7, 2015
5CFN
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BU of 5cfn by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3',3' c-di-AMP, c[A(3',5')pA(3',5')p]
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CB8
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Crystal structure of Adenosine-5'-phosphosulfate kinase in complex with APS and sulfate
Descriptor: ACETATE ION, ADENOSINE-5'-PHOSPHOSULFATE, Probable adenylyl-sulfate kinase, ...
Authors:Herrmann, J, Jez, J.M.
Deposit date:2015-06-30
Release date:2015-09-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Recapitulating the Structural Evolution of Redox Regulation in Adenosine 5'-Phosphosulfate Kinase from Cyanobacteria to Plants.
J.Biol.Chem., 290, 2015
5BVP
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BU of 5bvp by Molmil
The molecular mode of action and species specificity of canakinumab, a human monoclonal antibody neutralizing IL-1beta
Descriptor: CHLORIDE ION, Canakinumab Fab light-chain, Interleukin-1 beta, ...
Authors:Rondeau, J.M.
Deposit date:2015-06-05
Release date:2015-09-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The molecular mode of action and species specificity of canakinumab, a human monoclonal antibody neutralizing IL-1 beta.
Mabs, 7, 2015
5CB6
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Structure of adenosine-5'-phosphosulfate kinase
Descriptor: ADENOSINE-5'-PHOSPHOSULFATE, CACODYLATE ION, MAGNESIUM ION, ...
Authors:Herrmann, J, Jez, J.M.
Deposit date:2015-06-30
Release date:2015-08-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Recapitulating the Structural Evolution of Redox Regulation in Adenosine 5'-Phosphosulfate Kinase from Cyanobacteria to Plants.
J.Biol.Chem., 290, 2015
5CLM
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1,4-Oxazine BACE1 inhibitors
Descriptor: Beta-secretase 1, CHLORIDE ION, IODIDE ION, ...
Authors:Rombouts, F, Tresadern, G, Delgado, O, Martinez Lamenca, C, Van Gool, M, Garcia-Molina, A, Alonso De Diego, S, Oehlrich, D, Prokopcova, H, Alonso, J.M, Austin, N, Borghys, H, Van Brandt, S, Surkyn, M, De Cleyn, M, Vos, A, Alexander, R, MacDonald, G, Moechars, D, Trabanco, A, Gijsen, H.
Deposit date:2015-07-16
Release date:2015-09-30
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:1,4-Oxazine beta-Secretase 1 (BACE1) Inhibitors: From Hit Generation to Orally Bioavailable Brain Penetrant Leads.
J.Med.Chem., 58, 2015
5CFP
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Crystal structure of anemone STING (Nematostella vectensis) 'humanized' F276K in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]'
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.066 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015

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