4ZI8

Structure of mouse clustered PcdhgC3 EC1-3

Summary for 4ZI8

• Entry DOI: 10.2210/pdb4zi8/pdb
• Related: 4ZI9
• Descriptor: Protein Pcdhgc3, CALCIUM ION, CHLORIDE ION, ... (7 entities in total)
• Functional Keywords: protocadherin, complex, cell adhesion
• Biological source: Mus musculus (Mouse)
• Total number of polymer chains: 2
• Total formula weight: 75565.20

Authors

Nicoludis, J.M.,Lau, S.-Y.,Scharfe, C.P.I.,Marks, D.S.,Weihofen, W.A.,Gaudet, R. (deposition date: 2015-04-27, release date: 2015-10-28, Last modification date: 2024-10-30)

Primary citation

Nicoludis, J.M.,Lau, S.Y.,Scharfe, C.P.,Marks, D.S.,Weihofen, W.A.,Gaudet, R.
Structure and Sequence Analyses of Clustered Protocadherins Reveal Antiparallel Interactions that Mediate Homophilic Specificity.
Structure, 23:2087-2098, 2015

PubMed Abstract: Clustered protocadherin (Pcdh) proteins mediate dendritic self-avoidance in neurons via specific homophilic interactions in their extracellular cadherin (EC) domains. We determined crystal structures of EC1-EC3, containing the homophilic specificity-determining region, of two mouse clustered Pcdh isoforms (PcdhγA1 and PcdhγC3) to investigate the nature of the homophilic interaction. Within the crystal lattices, we observe antiparallel interfaces consistent with a role in trans cell-cell contact. Antiparallel dimerization is supported by evolutionary correlations. Two interfaces, located primarily on EC2-EC3, involve distinctive clustered Pcdh structure and sequence motifs, lack predicted glycosylation sites, and contain residues highly conserved in orthologs but not paralogs, pointing toward their biological significance as homophilic interaction interfaces. These two interfaces are similar yet distinct, reflecting a possible difference in interaction architecture between clustered Pcdh subfamilies. These structures initiate a molecular understanding of clustered Pcdh assemblies that are required to produce functional neuronal networks.

PubMed: 26481813
DOI: 10.1016/j.str.2015.09.005

Experimental method

X-RAY DIFFRACTION (1.698 Å)