Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42507 件

1H8O
DownloadVisualize
BU of 1h8o by Molmil
Three-dimensional structure of anti-ampicillin single chain Fv fragment.
分子名称: MUTANT AL2 6E7P9G, SULFATE ION
著者Burmester, J, Spinelli, S, Pugliese, L, Krebber, A, Honegger, A, Jung, S, Schimmele, B, Cambillau, C, Pluckthun, A.
登録日2001-02-14
公開日2001-08-02
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Selection, Characterization and X-Ray Structure of Anti-Ampicillin Single-Chain Fv Fragments from Phage-Displayed Murine Antibody Libraries
J.Mol.Biol., 309, 2001
5JIG
DownloadVisualize
BU of 5jig by Molmil
Crytsal structure of Wss1 from S. pombe
分子名称: NICKEL (II) ION, OXYGEN MOLECULE, Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c
著者Groll, M, Stingele, J, Boulton, S.
登録日2016-04-22
公開日2016-11-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Mechanism and Regulation of DNA-Protein Crosslink Repair by the DNA-Dependent Metalloprotease SPRTN.
Mol.Cell, 64, 2016
8BSD
DownloadVisualize
BU of 8bsd by Molmil
SARS-CoV-2 nsp10-16 methyltransferase in complex with tubercidin
分子名称: '2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, ...
著者Kremling, V, Oberthuer, D, Sprenger, J.
登録日2022-11-24
公開日2022-12-07
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structures of Tubercidin bound to the active site of the SARS-CoV-2 methyltransferase nsp10-16
To Be Published
8B8R
DownloadVisualize
BU of 8b8r by Molmil
Complex of Echovirus 11 with its attaching receptor decay-accelerating factor (CD55)
分子名称: DECAY ACCELERATING FACTOR (CD55), SPHINGOSINE, VP1, ...
著者Stuart, D.I, Ren, J, Zhou, D, Qin, L.
登録日2022-10-04
公開日2022-12-07
最終更新日2023-01-04
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Switching of Receptor Binding Poses between Closely Related Enteroviruses.
Viruses, 14, 2022
3BZ5
DownloadVisualize
BU of 3bz5 by Molmil
Functional domain of InlJ from Listeria monocytogenes includes a cysteine ladder
分子名称: CHLORIDE ION, Internalin-J, SULFATE ION
著者Bublitz, M, Holland, C, Sabet, C, Reichelt, J, Cossart, P, Heinz, D.W, Bierne, H, Schubert, W.D.
登録日2008-01-17
公開日2008-06-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure and standardized geometric analysis of InlJ, a listerial virulence factor and leucine-rich repeat protein with a novel cysteine ladder.
J.Mol.Biol., 378, 2008
5BYI
DownloadVisualize
BU of 5byi by Molmil
Human carbonic anhydrase II with an azobenzene inhibitor (1d)
分子名称: 4-(HYDROXYMERCURY)BENZOIC ACID, 4-[(E)-(4-aminophenyl)diazenyl]benzenesulfonamide, Carbonic anhydrase 2, ...
著者Groll, M, Broichhagen, J.
登録日2015-06-10
公開日2015-08-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Azobenzene-based inhibitors of human carbonic anhydrase II.
Beilstein J Org Chem, 11, 2015
1R52
DownloadVisualize
BU of 1r52 by Molmil
Crystal structure of the bifunctional chorismate synthase from Saccharomyces cerevisiae
分子名称: Chorismate synthase
著者Quevillon-Cheruel, S, Leulliot, N, Meyer, P, Graille, M, Bremang, M, Blondeau, K, Sorel, I, Poupon, A, Janin, J, van Tilbeurgh, H.
登録日2003-10-09
公開日2003-12-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Crystal structure of the bifunctional chorismate synthase from Saccharomyces cerevisiae
J.Biol.Chem., 279, 2004
1R8H
DownloadVisualize
BU of 1r8h by Molmil
Comparison of the structure and DNA binding properties of the E2 proteins from an oncogenic and a non-oncogenic human papillomavirus
分子名称: PHOSPHATE ION, Regulatory protein E2
著者Dell, G, Wilkinson, K.W, Tranter, R, Parish, J, Brady, R.L, Gaston, K.
登録日2003-10-24
公開日2003-12-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Comparison of the structure and DNA-binding properties of the E2 proteins from an oncogenic and a non-oncogenic human papillomavirus.
J.Mol.Biol., 334, 2003
8BW4
DownloadVisualize
BU of 8bw4 by Molmil
PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
分子名称: (2R)-4-(3-fluoranylthiophen-2-yl)carbonyl-N-(4-methoxyphenyl)-2-methyl-piperazine-1-carboxamide, PH-interacting protein
著者Grosjean, H, Aimon, A, Hassell-Hart, S, Bradshaw, W.J, Krojer, T, Talon, R, Douangamath, A, Koekemoer, L, Biggin, P.C, Spencer, J, von Delft, F.
登録日2022-12-06
公開日2022-12-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
To Be Published
1H29
DownloadVisualize
BU of 1h29 by Molmil
Sulfate respiration in Desulfovibrio vulgaris Hildenborough: Structure of the 16-heme Cytochrome c HmcA at 2.5 A resolution and a view of its role in transmembrane electron transfer
分子名称: HEME C, HIGH-MOLECULAR-WEIGHT CYTOCHROME C
著者Matias, P.M, Coelho, A.V, Valente, F.M.A, Placido, D, Legall, J, Xavier, A.V, Pereira, I.A.C, Carrondo, M.A.
登録日2002-08-01
公開日2002-10-02
最終更新日2019-05-15
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and a View of its Role in Transmembrane Electron Transfer
J.Biol.Chem., 277, 2002
5JN6
DownloadVisualize
BU of 5jn6 by Molmil
The NMR Solution Structure of RPA3313
分子名称: Uncharacterized protein
著者Catazaro, J, Lowe, A.J, Powers, R, Structural Genomics Consortium (SGC)
登録日2016-04-29
公開日2016-05-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The NMR solution structure and function of RPA3313: a putative ribosomal transport protein from Rhodopseudomonas palustris.
Proteins, 85, 2017
5C04
DownloadVisualize
BU of 5c04 by Molmil
Crystal structure of the F37H mutant AhpE from Mycobacterium tuberculosis
分子名称: Putative peroxiredoxin MT2298
著者Pallo, A, Dufe, V.T, Messens, J.
登録日2015-06-12
公開日2016-07-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The active site architecture in peroxiredoxins: a case study on Mycobacterium tuberculosis AhpE.
Chem.Commun.(Camb.), 52, 2016
3LGU
DownloadVisualize
BU of 3lgu by Molmil
Y162A mutant of the DegS-deltaPDZ protease
分子名称: Protease degS
著者Sohn, J, Grant, R.A, Sauer, R.T.
登録日2010-01-21
公開日2010-08-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Allostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution.
J.Biol.Chem., 285, 2010
8BW3
DownloadVisualize
BU of 8bw3 by Molmil
PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
分子名称: (2S)-N-(cyclopropylmethyl)-2-methyl-4-(1-methyl-1H-pyrrole-2-carbonyl)piperazine-1-carboxamide, PH-interacting protein
著者Grosjean, H, Aimon, A, Hassell-Hart, S, Bradshaw, W.J, Krojer, T, Talon, R, Douangamath, A, Koekemoer, L, Biggin, P.C, Spencer, J, von Delft, F.
登録日2022-12-06
公開日2022-12-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative
To Be Published
8BET
DownloadVisualize
BU of 8bet by Molmil
Structure of D188A-fructofuranosidase from Rhodotorula dairenesis in complex with sucrose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-fructofuranosidase, ...
著者Jimenez-Ortega, E, Sanz-Aparicio, J.
登録日2022-10-21
公開日2022-12-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Insights into the Structure of the Highly Glycosylated Ffase from Rhodotorula dairenensis Enhance Its Biotechnological Potential.
Int J Mol Sci, 23, 2022
3BUY
DownloadVisualize
BU of 3buy by Molmil
MHC-I in complex with peptide
分子名称: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-B alpha chain, ...
著者Rossjohn, J, La Gruta, N.L, Purcell, A.W, Turner, S.J, Dunstone, M.A.
登録日2008-01-03
公開日2008-03-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Epitope-specific TCRbeta repertoire diversity imparts no functional advantage on the CD8+ T cell response to cognate viral peptides
Proc.Natl.Acad.Sci.Usa, 105, 2008
7L9I
DownloadVisualize
BU of 7l9i by Molmil
Crystal structure of human ARH3-D314A bound to magnesium and ADP-ribose
分子名称: ADP-ribose glycohydrolase ARH3, MAGNESIUM ION, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
著者Pourfarjam, Y, Kurinov, I, Moss, J, Kim, I.K.
登録日2021-01-04
公開日2021-04-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and biochemical analysis of human ADP-ribosyl-acceptor hydrolase 3 reveals the basis of metal selectivity and different roles for the two magnesium ions.
J.Biol.Chem., 296, 2021
1H8V
DownloadVisualize
BU of 1h8v by Molmil
The X-ray Crystal Structure of the Trichoderma reesei Family 12 Endoglucanase 3, Cel12A, at 1.9 A Resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ENDO-BETA-1,4-GLUCANASE
著者Sandgren, M, Shaw, A, Ropp, T.H, Wu, S, Bott, R, Cameron, A.D, Stahlberg, J, Mitchinson, C, Jones, T.A.
登録日2001-02-16
公開日2001-04-24
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The X-Ray Crystal Structure of the Trichoderma Reesei Family 12 Endoglucanase 3, Cel12A, at 1.9 A Resolution
J.Mol.Biol., 308, 2001
7LT9
DownloadVisualize
BU of 7lt9 by Molmil
Crystal structure of Ras suppressor-1 in complex with PINCH-1 LIM4-5 domains
分子名称: LIM and senescent cell antigen-like-containing domain protein 1, Ras suppressor protein 1, ZINC ION
著者Fukuda, K, Qin, J.
登録日2021-02-19
公開日2021-04-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.050112 Å)
主引用文献Molecular basis for Ras suppressor-1 binding to PINCH-1 in focal adhesion assembly.
J.Biol.Chem., 296, 2021
6CEW
DownloadVisualize
BU of 6cew by Molmil
Segment AMMAAA from the low complexity domain of TDP-43, residues 321-326
分子名称: AMMAAA
著者Guenther, E.L, Cao, Q, Lu, J, Sawaya, M.R, Eisenberg, D.S.
登録日2018-02-12
公開日2018-04-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation.
Nat. Struct. Mol. Biol., 25, 2018
8BES
DownloadVisualize
BU of 8bes by Molmil
Structure of D188A-fructofuranosidase from Rhodotorula dairenensis in complex with fructose
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Jimenez-Ortega, E, Sanz-Aparicio, J.
登録日2022-10-21
公開日2022-12-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Insights into the Structure of the Highly Glycosylated Ffase from Rhodotorula dairenensis Enhance Its Biotechnological Potential.
Int J Mol Sci, 23, 2022
5C3S
DownloadVisualize
BU of 5c3s by Molmil
Crystal structure of the full-length Neurospora crassa T7H in complex with alpha-KG and 5-formyluracil (5fU)
分子名称: 1,2-ETHANEDIOL, 2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carbaldehyde, 2-OXOGLUTARIC ACID, ...
著者Li, W, Zhang, T, Ding, J.
登録日2015-06-17
公開日2015-10-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Molecular basis for the substrate specificity and catalytic mechanism of thymine-7-hydroxylase in fungi
Nucleic Acids Res., 43, 2015
1H13
DownloadVisualize
BU of 1h13 by Molmil
Structure of a cold-adapted family 8 xylanase
分子名称: ENDO-1,4-BETA-XYLANASE
著者Van Petegem, F, Collins, T, Meuwis, M.A, Feller, G, Gerday, C, Van Beeumen, J.
登録日2002-07-02
公開日2003-03-13
最終更新日2019-07-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献The Structure of a Cold-Adapted Family 8 Xylanase at 1.3 A Resolution: Structural Adaptations to Cold and Investigation of the Active Site
J.Biol.Chem., 278, 2003
1PTM
DownloadVisualize
BU of 1ptm by Molmil
Crystal structure of E.coli PdxA
分子名称: 4-hydroxythreonine-4-phosphate dehydrogenase, PHOSPHATE ION, ZINC ION
著者Sivaraman, J, Li, Y, Banks, J, Cane, D.E, Matte, A, Cygler, M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
登録日2003-06-23
公開日2003-11-04
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal Structure of Escherichia coli PdxA, an Enzyme Involved in the Pyridoxal Phosphate Biosynthesis Pathway
J.Biol.Chem., 278, 2003
8IBN
DownloadVisualize
BU of 8ibn by Molmil
Cryo-EM structure of KpFtsZ single filament
分子名称: Cell division protein FtsZ, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, POTASSIUM ION
著者Fujita, J, Amesaka, H, Yoshizawa, T, Kuroda, N, Kamimura, N, Hibino, K, Konishi, T, Kato, Y, Hara, M, Inoue, T, Namba, K, Tanaka, S, Matsumura, H.
登録日2023-02-10
公開日2023-08-02
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody.
Nat Commun, 14, 2023

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon