Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42254 件

4AVJ
DownloadVisualize
BU of 4avj by Molmil
Structure of the FimH lectin domain in the trigonal space group, in complex with a methanol triazol ethyl phenyl alpha-D-mannoside at 2.1 A resolution
分子名称: FIMH, METHANOL TRIAZOL ETHYL PHENYL 1O-ALPHA-D-MANNOPYRANOSIDE, NICKEL (II) ION, ...
著者Wellens, A, Lahmann, M, Touaibia, M, Vaucher, J, Oscarson, S, Roy, R, Remaut, H, Bouckaert, J.
登録日2012-05-26
公開日2012-06-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.105 Å)
主引用文献The Tyrosine Gate as a Potential Entropic Lever in the Receptor-Binding Site of the Bacterial Adhesin Fimh.
Biochemistry, 51, 2012
7MPJ
DownloadVisualize
BU of 7mpj by Molmil
Stm1 bound vacant 80S structure isolated from wild-type
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ...
著者Rai, J, Zhao, Y, Li, H.
登録日2021-05-04
公開日2022-05-11
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.
Structure, 30, 2022
3LYW
DownloadVisualize
BU of 3lyw by Molmil
Crystal structure of YbbR family protein Dhaf_0833 from Desulfitobacterium hafniense DCB-2. Northeast Structural Genomics Consortium target id DhR29B
分子名称: YbbR family protein
著者Seetharaman, J, Lew, S, Wang, D, Janjua, H, Cunningham, K, Owens, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2010-02-28
公開日2010-04-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of YbbR family protein Dhaf_0833 from Desulfitobacterium hafniense DCB-2. Northeast Structural Genomics Consortium target id DhR29B
To be Published
3F2H
DownloadVisualize
BU of 3f2h by Molmil
Crystal structure of the mercury-bound form of MerB mutant C160S, the Organomercurial Lyase involved in a bacterial mercury resistance system
分子名称: Alkylmercury lyase, MERCURY (II) ION
著者Lafrance-Vanasse, J, Lefebvre, M, Di Lello, P, Sygusch, J, Omichinski, J.G.
登録日2008-10-29
公開日2008-11-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structures of the Organomercurial Lyase MerB in Its Free and Mercury-bound Forms: INSIGHTS INTO THE MECHANISM OF METHYLMERCURY DEGRADATION
J.Biol.Chem., 284, 2009
3LYV
DownloadVisualize
BU of 3lyv by Molmil
Crystal structure of a domain of ribosome-associated factor Y from streptococcus pyogenes serotype M6. Northeast Structural Genomics Consortium target id DR64A
分子名称: Ribosome-associated factor Y
著者Seetharaman, J, Neely, H, Forouhar, F, Wang, D, Janjua, H, Cunningham, K, Owens, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2010-02-28
公開日2010-05-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of a domain of ribosome-associated factor Y from streptococcus pyogenes serotype M6. Northeast Structural Genomics Consortium target id DR64A
To be Published
1U43
DownloadVisualize
BU of 1u43 by Molmil
IspF with 4-diphosphocytidyl-2c-methyl-D-erythritol 2-phosphate
分子名称: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL 2-PHOSPHATE
著者Steinbacher, S, Kaiser, J, Wungsintaweekul, J, Hecht, S, Eisenreich, W, Gerhardt, S, Bacher, A, Rohdich, F.
登録日2004-07-23
公開日2004-08-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structure of 2C-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase Involved in Mevalonate Independent Biosynthesis of Isoprenoids
J.Mol.Biol., 316, 2002
3R2B
DownloadVisualize
BU of 3r2b by Molmil
MK2 kinase bound to Compound 5b
分子名称: 2'-[2-(1,3-benzodioxol-5-yl)pyrimidin-4-yl]-5',6'-dihydrospiro[piperidine-4,7'-pyrrolo[3,2-c]pyridin]-4'(1'H)-one, MAP kinase-activated protein kinase 2
著者Oubrie, A, van Zeeland, M, Versteegh, J.
登録日2011-03-14
公開日2011-05-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure-based lead identification of ATP-competitive MK2 inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
3LTR
DownloadVisualize
BU of 3ltr by Molmil
5-OMe-dU containing DNA 8mer
分子名称: 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3', MAGNESIUM ION
著者Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
登録日2010-02-16
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
7MWN
DownloadVisualize
BU of 7mwn by Molmil
An engineered PYL2-based WIN 55,212-2 synthetic cannabinoid sensor with a stabilized HAB1 variant
分子名称: ACETATE ION, Abscisic acid receptor PYL2, CHLORIDE ION, ...
著者Peterson, F.C, Beltran, J, Bedewitz, M, Steiner, P.J, Cutler, S.R, Whitehead, T.A.
登録日2021-05-17
公開日2022-06-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.902 Å)
主引用文献Rapid biosensor development using plant hormone receptors as reprogrammable scaffolds.
Nat.Biotechnol., 40, 2022
1U5S
DownloadVisualize
BU of 1u5s by Molmil
NMR structure of the complex between Nck-2 SH3 domain and PINCH-1 LIM4 domain
分子名称: Cytoplasmic protein NCK2, PINCH protein, ZINC ION
著者Vaynberg, J, Fukuda, T, Vinogradova, O, Velyvis, A, Ng, L, Wu, C, Qin, J.
登録日2004-07-28
公開日2005-04-05
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of an ultraweak protein-protein complex and its crucial role in regulation of cell morphology and motility.
Mol.Cell, 17, 2005
3LYY
DownloadVisualize
BU of 3lyy by Molmil
Crystal structure of the MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A
分子名称: Adhesion exoprotein
著者Seetharaman, J, Lew, S, Wang, D, Janjua, H, Cunningham, K, Owens, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2010-02-28
公開日2010-04-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A
To be Published
3LUY
DownloadVisualize
BU of 3luy by Molmil
Putative chorismate mutase from Bifidobacterium adolescentis
分子名称: 3-PHENYLPYRUVIC ACID, Probable chorismate mutase
著者Osipiuk, J, Bigelow, L, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2010-02-18
公開日2010-03-09
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray crystal structure of putative chorismate mutase from Bifidobacterium adolescentis.
To be Published
3FP2
DownloadVisualize
BU of 3fp2 by Molmil
Crystal structure of Tom71 complexed with Hsp82 C-terminal fragment
分子名称: ATP-dependent molecular chaperone HSP82, CHLORIDE ION, MAGNESIUM ION, ...
著者Li, J, Qian, X, Hu, J, Sha, B.
登録日2009-01-03
公開日2009-07-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Molecular chaperone Hsp70/Hsp90 prepares the mitochondrial outer membrane translocon receptor Tom71 for preprotein loading.
J.Biol.Chem., 284, 2009
4BE4
DownloadVisualize
BU of 4be4 by Molmil
Closed conformation of O. piceae sterol esterase
分子名称: 1,4-DIETHYLENE DIOXIDE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Gutierrez-Fernandez, J, Vaquero, M.E, Prieto, A, Barriuso, J, Gonzalez, M.J, Hermoso, J.A.
登録日2013-03-05
公開日2014-03-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structures of Ophiostoma Piceae Sterol Esterase: Structural Insights Into Activation Mechanism and Product Release.
J.Struct.Biol., 187, 2014
3FI8
DownloadVisualize
BU of 3fi8 by Molmil
Crystal structure of choline kinase from Plasmodium Falciparum, PF14_0020
分子名称: ADENOSINE-5'-DIPHOSPHATE, Choline kinase, MAGNESIUM ION, ...
著者Wernimont, A.K, Pizarro, J.C, Artz, J.D, Amaya, M.F, Xiao, T, Lew, J, Wasney, G, Senesterra, G, Kozieradzki, I, Cossar, D, Vedadi, M, Schapira, M, Bochkarev, A, Arrowsmith, C.H, Bountra, C, Weigelt, J, Edwards, A.M, Hui, R, Hills, T, Structural Genomics Consortium (SGC)
登録日2008-12-11
公開日2009-02-10
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of choline kinase from Plasmodium Falciparum, PF14_0020
TO BE PUBLISHED
7MME
DownloadVisualize
BU of 7mme by Molmil
Crystal structure of HCV NS3/4A D168A protease in complex with JZ01-15
分子名称: 1,2-ETHANEDIOL, GLYCEROL, NS3/4A protease, ...
著者Zephyr, J, Schiffer, C.A.
登録日2021-04-29
公開日2022-08-31
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Deciphering the Molecular Mechanism and Role of Fluorination in HCV Protease Inhibitor Potency and Drug Resistance
To Be Published
1BHX
DownloadVisualize
BU of 1bhx by Molmil
X-RAY STRUCTURE OF THE COMPLEX OF HUMAN ALPHA THROMBIN WITH THE INHIBITOR SDZ 229-357
分子名称: 5-OXO-6-PHENYLMETHANESULFONYLAMINO-HEXAHYDRO-THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID (3-GUANIDINO-PROPYL)-AMIDE, ALPHA THROMBIN
著者Kallen, J.
登録日1998-06-10
公開日1998-11-04
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Rational design, synthesis, and X-ray structure of selective noncovalent thrombin inhibitors.
J.Med.Chem., 41, 1998
6RTR
DownloadVisualize
BU of 6rtr by Molmil
Piperideine-6-carboxylate dehydrogenase from Streptomyces clavuligerus
分子名称: ACETATE ION, GLYCEROL, SULFATE ION, ...
著者Hasse, D, Huelsemann, J, Carlsson, G, Andersson, I.
登録日2019-05-26
公開日2019-12-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structure and mechanism of piperideine-6-carboxylate dehydrogenase from Streptomyces clavuligerus.
Acta Crystallogr D Struct Biol, 75, 2019
1S18
DownloadVisualize
BU of 1s18 by Molmil
Structure and protein design of human apyrase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ...
著者Dai, J, Liu, J, Deng, Y, Smith, T.M, Lu, M.
登録日2004-01-05
公開日2004-03-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure and protein design of a human platelet function inhibitor.
Cell(Cambridge,Mass.), 116, 2004
7YXU
DownloadVisualize
BU of 7yxu by Molmil
Crystal structure of agonistic antibody 1618 fab domain bound to human 4-1BB.
分子名称: MANGANESE (II) ION, Tumor necrosis factor receptor superfamily member 9, heavy chain of Fab, ...
著者Hakansson, M, Rose, N, Petersson, J, Enell Smith, K, Thorolfsson, M, von Schantz, L.
登録日2022-02-16
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献The Bispecific Tumor Antigen-Conditional 4-1BB x 5T4 Agonist, ALG.APV-527, Mediates Strong T-Cell Activation and Potent Antitumor Activity in Preclinical Studies.
Mol.Cancer Ther., 22, 2023
3QSD
DownloadVisualize
BU of 3qsd by Molmil
Structure of cathepsin B1 from Schistosoma mansoni in complex with CA074 inhibitor
分子名称: ACETATE ION, Cathepsin B-like peptidase (C01 family), DI(HYDROXYETHYL)ETHER, ...
著者Rezacova, P, Jilkova, A, Brynda, J, Horn, M, Mares, M.
登録日2011-02-21
公開日2011-08-10
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural Basis for Inhibition of Cathepsin B Drug Target from the Human Blood Fluke, Schistosoma mansoni.
J.Biol.Chem., 286, 2011
7MST
DownloadVisualize
BU of 7mst by Molmil
Phosphorylated human E105Qa GTP-specific succinyl-CoA synthetase complexed with coenzyme A
分子名称: 1,2-ETHANEDIOL, COENZYME A, GLYCEROL, ...
著者Huang, J, Fraser, M.E.
登録日2021-05-12
公開日2022-10-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献The structure of succinyl-CoA synthetase bound to the succinyl-phosphate intermediate clarifies the catalytic mechanism of ATP-citrate lyase
Acta Crystallogr.,Sect.F, 78, 2022
7CUV
DownloadVisualize
BU of 7cuv by Molmil
Crystal structure of a novel alpha/beta hydrolase in apo form
分子名称: alpha/beta hydrolase
著者Gao, J, Han, X, Zheng, Y.Y, Liu, W.D.
登録日2020-08-25
公開日2021-08-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase.
Acs Catalysis, 12, 2022
3F0I
DownloadVisualize
BU of 3f0i by Molmil
Arsenate reductase from Vibrio cholerae.
分子名称: Arsenate reductase, MALONATE ION, SODIUM ION
著者Osipiuk, J, Gu, M, Stam, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2008-10-24
公開日2008-11-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献X-ray crystal structure of Arsenate reductase from Vibrio cholerae.
To be Published
7M5T
DownloadVisualize
BU of 7m5t by Molmil
Solution NMR structure of de novo designed protein 0515
分子名称: De novo designed protein 0515
著者Ramelot, T.A, Hao, J, Baker, D, Montelione, G.T.
登録日2021-03-24
公開日2021-12-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo protein design by deep network hallucination.
Nature, 600, 2021

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon