Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42507 results

8A37
DownloadVisualize
BU of 8a37 by Molmil
Crystal structure of PpSB1-LOV-K117E mutant (dark state), tetragonal form
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Batra-Safferling, R, Granzin, J.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of PpSB1-LOV-K117E mutant (dark state), tetragonal form
To Be Published
4QT7
DownloadVisualize
BU of 4qt7 by Molmil
Crystal structure of the c-Src SH3 domain in complex with a peptide from the Hepatitis C virus NS5A-protein
Descriptor: NS5A, Proto-oncogene tyrosine-protein kinase Src
Authors:Camara-Artigas, A, Bacarizo, J.
Deposit date:2014-07-07
Release date:2014-12-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of the c-Src-SH3 domain in complex with a proline-rich motif of NS5A protein from the hepatitis C virus.
J.Struct.Biol., 189, 2015
1KIU
DownloadVisualize
BU of 1kiu by Molmil
FimH adhesin Q133N mutant-FimC chaperone complex with methyl-alpha-D-mannose
Descriptor: CHAPERONE PROTEIN FimC, FimH PROTEIN, methyl alpha-D-mannopyranoside
Authors:Hung, C.S, Bouckaert, J.
Deposit date:2001-12-03
Release date:2002-06-05
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection.
Mol.Microbiol., 44, 2002
2YEY
DownloadVisualize
BU of 2yey by Molmil
Crystal structure of the allosteric-defective chaperonin GroEL E434K mutant
Descriptor: 60 KDA CHAPERONIN
Authors:Cabo-Bilbao, A, Mechaly, A.E, Agirre, J, Spinelli, S, Sot, B, Muga, A, Guerin, D.M.A.
Deposit date:2011-03-31
Release date:2011-05-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Crystal Structure of the Temperature-Sensitive and Allosteric-Defective Chaperonin Groele461K.
J.Struct.Biol., 155, 2006
7L0L
DownloadVisualize
BU of 7l0l by Molmil
Cryo-EM structure of the VRC316 clinical trial, vaccine-elicited, human antibody 316-310-1B11 in complex with an H2 CAN05 HA trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 316-310-1B11 Heavy Chain, 316-310-1B11 Light Chain, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2020-12-11
Release date:2021-11-03
Last modified:2022-03-09
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:A single residue in influenza virus H2 hemagglutinin enhances the breadth of the B cell response elicited by H2 vaccination.
Nat Med, 28, 2022
8J40
DownloadVisualize
BU of 8j40 by Molmil
Crystal Structure of CATB8 in complex with chloramphenicol
Descriptor: CHLORAMPHENICOL, CatB8, GLYCEROL, ...
Authors:Liao, J, Kuang, L, Jiang, Y.
Deposit date:2023-04-18
Release date:2024-02-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Chloramphenicol Binding Sites of Acinetobacter baumannii Chloramphenicol Acetyltransferase CatB8.
Acs Infect Dis., 10, 2024
2Z0M
DownloadVisualize
BU of 2z0m by Molmil
Crystal structure of hypothetical ATP-dependent RNA helicase from Sulfolobus tokodaii
Descriptor: 337aa long hypothetical ATP-dependent RNA helicase deaD
Authors:Nakagawa, N, Kusano, S, Shirouzu, M, Chen, L, Fu, Z.-Q, Chrzas, J, Wang, B.-C, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of hypothetical ATP-dependent RNA helicase from Sulfolobus tokodaii
To be Published
5IVL
DownloadVisualize
BU of 5ivl by Molmil
CshA Helicase
Descriptor: DEAD-box ATP-dependent RNA helicase CshA, SULFATE ION
Authors:Huen, J, Lin, C.-L, Yi, W.-L, Li, C.-L, Yuan, H.
Deposit date:2016-03-21
Release date:2017-03-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Insights into a Unique Dimeric DEAD-Box Helicase CshA that Promotes RNA Decay.
Structure, 25, 2017
3J2B
DownloadVisualize
BU of 3j2b by Molmil
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Descriptor: 16S rRNA
Authors:Guo, Q, Goto, S, Chen, Y, Muto, A, Himeno, H, Deng, H, Lei, J, Gao, N.
Deposit date:2012-09-28
Release date:2013-01-16
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process
Nucleic Acids Res., 41, 2013
5J39
DownloadVisualize
BU of 5j39 by Molmil
Crystal Structure of the extended TUDOR domain from TDRD2
Descriptor: CACODYLATE ION, Tudor and KH domain-containing protein, UNKNOWN ATOM OR ION
Authors:Zhang, H, Tempel, W, Dong, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2016-03-30
Release date:2016-04-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for arginine methylation-independent recognition of PIWIL1 by TDRD2.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2YGI
DownloadVisualize
BU of 2ygi by Molmil
Methanobactin HM1
Descriptor: COPPER (II) ION, METHANOBACTIN HM1
Authors:Ghazouani, A, Basle, A, Firbank, S.J, Gray, J, Dennison, C.
Deposit date:2011-04-18
Release date:2012-04-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:Variations in Methanobactin Structure Influences Copper Utilization by Methane-Oxidizing Bacteria.
Proc.Natl.Acad.Sci.USA, 109, 2012
3J7V
DownloadVisualize
BU of 3j7v by Molmil
Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
Descriptor: Major capsid protein 10A
Authors:Guo, F, Liu, Z, Fang, P.A, Zhang, Q, Wright, E.T, Wu, W, Zhang, C, Vago, F, Ren, Y, Jakata, J, Chiu, W, Serwer, P, Jiang, W.
Deposit date:2014-08-12
Release date:2014-10-15
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
Proc.Natl.Acad.Sci.USA, 111, 2014
5CGE
DownloadVisualize
BU of 5cge by Molmil
Structure of Hydroxyethylthiazole Kinase ThiM from Staphylococcus aureus in complex with substrate analog 2-(2-methyl-1H-imidazole-1-yl)ethanol
Descriptor: 2-(2-methyl-1H-imidazol-1-yl)ethanol, Hydroxyethylthiazole kinase, MAGNESIUM ION
Authors:Kuenz, M, Drebes, J, Windshuegel, B, Cang, H, Wrenger, C, Betzel, C.
Deposit date:2015-07-09
Release date:2016-03-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Structure of ThiM from Vitamin B1 biosynthetic pathway of Staphylococcus aureus - Insights into a novel pro-drug approach addressing MRSA infections.
Sci Rep, 6, 2016
8A38
DownloadVisualize
BU of 8a38 by Molmil
RING domain of human TRIM2
Descriptor: Tripartite motif-containing protein 2, ZINC ION
Authors:Perez-Borrajero, C, Murciano, B, Hennig, J.
Deposit date:2022-06-07
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.196 Å)
Cite:Structural and biophysical studies of TRIM2 and TRIM3
To Be Published
3J3V
DownloadVisualize
BU of 3j3v by Molmil
Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)
Descriptor: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Li, N, Guo, Q, Zhang, Y, Yuan, Y, Ma, C, Lei, J, Gao, N.
Deposit date:2013-04-28
Release date:2013-06-12
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (13.3 Å)
Cite:Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit
Nucleic Acids Res., 41, 2013
2YHM
DownloadVisualize
BU of 2yhm by Molmil
Structure of respiratory syncytial virus nucleocapsid protein, P212121 crystal form
Descriptor: NUCLEOPROTEIN, RNA
Authors:El Omari, K, Dhaliwal, B, Ren, J, Abrescia, N.G.A, Lockyer, M, Powell, K.L, Hawkins, A.R, Stammers, D.K.
Deposit date:2011-05-04
Release date:2012-01-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structures of Respiratory Syncytial Virus Nucleocapsid Protein from Two Crystal Forms: Details of Potential Packing Interactions in the Native Helical Form.
Acta Crystallogr.,Sect.F, 67, 2011
2YGJ
DownloadVisualize
BU of 2ygj by Molmil
Methanobactin MB4
Descriptor: COPPER (II) ION, METHANOBACTIN MB4, SODIUM ION
Authors:Ghazouani, A, Basle, A, Firbank, S.J, Gray, J, Dennison, C.
Deposit date:2011-04-18
Release date:2012-04-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:Variations in Methanobactin Structure Influences Copper Utilization by Methane-Oxidizing Bacteria.
Proc.Natl.Acad.Sci.USA, 109, 2012
8JIC
DownloadVisualize
BU of 8jic by Molmil
human telomere two-quartet G-quadruplex at pH 7.0
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
Authors:Wang, B, Galer, P, Plavec, J.
Deposit date:2023-05-26
Release date:2024-04-03
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Unveiling the structural mechanism of a G-quadruplex pH-Driven switch.
Biochimie, 214, 2023
5IYV
DownloadVisualize
BU of 5iyv by Molmil
Crystal structure of the Arabidopsis receptor kinase HAESA LRR ectdomain in complex with the peptide hormone IDL1.
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Santiago, J, Hothorn, M.
Deposit date:2016-03-24
Release date:2016-04-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission.
Elife, 5, 2016
5CIU
DownloadVisualize
BU of 5ciu by Molmil
Structural basis of the recognition of H3K36me3 by DNMT3B PWWP domain
Descriptor: DNA (cytosine-5)-methyltransferase 3B, GLYCEROL, Histone H3.2
Authors:Rondelet, G, DAL MASO, T, Willems, L, Wouters, J.
Deposit date:2015-07-13
Release date:2016-03-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural basis for recognition of histone H3K36me3 nucleosome by human de novo DNA methyltransferases 3A and 3B.
J.Struct.Biol., 194, 2016
4DPI
DownloadVisualize
BU of 4dpi by Molmil
BACE-1 in complex with HEA-macrocyclic inhibitor, MV078512
Descriptor: (4S,8E,11R)-4-[(1R)-1-hydroxy-2-{[3-(propan-2-yl)benzyl]amino}ethyl]-16-methyl-11-phenyl-6-oxa-3,12-diazabicyclo[12.3.1]octadeca-1(18),8,14,16-tetraene-2,13-dione, Beta-secretase 1
Authors:Lindberg, J, Borkakoti, N, Derbyshire, D.
Deposit date:2012-02-13
Release date:2012-07-11
Last modified:2013-01-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Highly potent macrocyclic BACE-1 inhibitors incorporating a hydroxyethylamine core: design, synthesis and X-ray crystal structures of enzyme inhibitor complexes.
Bioorg.Med.Chem., 20, 2012
8J0N
DownloadVisualize
BU of 8j0n by Molmil
cryo-EM structure of human EMC
Descriptor: ER membrane protein complex subunit 1, ER membrane protein complex subunit 10, ER membrane protein complex subunit 2, ...
Authors:Li, M, Zhang, C, Wu, J, Lei, M.
Deposit date:2023-04-11
Release date:2024-04-03
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structural insights into human EMC and its interaction with VDAC.
Aging (Albany NY), 16, 2024
5IX7
DownloadVisualize
BU of 5ix7 by Molmil
Crystal structure of metallo-DNA nanowire with infinite one-dimensional silver array
Descriptor: DNA (5'-D(*GP*GP*AP*CP*TP*(CBR)P*GP*AP*CP*TP*CP*C)-3'), POTASSIUM ION, SILVER ION
Authors:Kondo, J, Tada, Y, Dairaku, T, Hattori, Y, Saneyoshi, H, Ono, A, Tanaka, Y.
Deposit date:2016-03-23
Release date:2017-07-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.398 Å)
Cite:A metallo-DNA nanowire with uninterrupted one-dimensional silver array
Nat Chem, 9, 2017
1FU0
DownloadVisualize
BU of 1fu0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF THE PHOSPHO-SERINE 46 HPR FROM ENTEROCOCCUS FAECALIS
Descriptor: PHOSPHOCARRIER PROTEIN HPR
Authors:Audette, G.F, Engelmann, R, Hengstenberg, W, Deutscher, J, Hayakawa, K, Quail, J.W, Delbaere, L.T.J.
Deposit date:2000-09-13
Release date:2000-11-22
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The 1.9 A resolution structure of phospho-serine 46 HPr from Enterococcus faecalis.
J.Mol.Biol., 303, 2000
5IXQ
DownloadVisualize
BU of 5ixq by Molmil
Crystal structure of the Arabidopsis receptor kinase HAESA LRR ectdomain in complex with the peptide hormone IDA.
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Santiago, J, Hothorn, M.
Deposit date:2016-03-23
Release date:2016-04-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission.
Elife, 5, 2016

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon