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PDB: 42880 results

2Q1C
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2-keto-3-deoxy-D-arabinonate dehydratase complexed with calcium and 2-oxobutyrate
Descriptor: 2-KETOBUTYRIC ACID, 2-keto-3-deoxy-D-arabinonate dehydratase, CALCIUM ION
Authors:Barends, T, Brouns, S, Worm, P, Akerboom, J, Turnbull, A, Salmon, L.
Deposit date:2007-05-24
Release date:2008-04-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
J.Mol.Biol., 379, 2008
2K0E
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A Coupled Equilibrium Shift Mechanism in Calmodulin-Mediated Signal Transduction
Descriptor: CALCIUM ION, Calmodulin
Authors:Gsponer, J, Christodoulou, J, Cavalli, A, Bui, J.M, Richter, B, Dobson, C.M, Vendruscolo, M.
Deposit date:2008-02-02
Release date:2008-06-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction
Structure, 16, 2008
5WBR
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Structure of human Ketohexokinase complexed with hits from fragment screening
Descriptor: 6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-[(3S)-3-(hydroxymethyl)piperidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile, CITRIC ACID, GLYCEROL, ...
Authors:Pandit, J.
Deposit date:2017-06-29
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Discovery of Fragment-Derived Small Molecules for in Vivo Inhibition of Ketohexokinase (KHK).
J. Med. Chem., 60, 2017
7K3R
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Cryo-EM structure of AIM2-PYD filament
Descriptor: Interferon-inducible protein AIM2
Authors:Zheng, W, Matyszewski, M, Sohn, J, Egelman, E.H.
Deposit date:2020-09-12
Release date:2021-05-26
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Distinct axial and lateral interactions within homologous filaments dictate the signaling specificity and order of the AIM2-ASC inflammasome.
Nat Commun, 12, 2021
7K0V
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Crystal structure of bRaf in complex with inhibitor GNE-0749
Descriptor: CHLORIDE ION, N-(3,3-dimethylbutyl)-N'-{2-fluoro-5-[(5-fluoro-3-methyl-4-oxo-3,4-dihydroquinazolin-6-yl)amino]-4-methylphenyl}urea, Non-specific serine/threonine protein kinase
Authors:Yin, J, Eigenbrot, C.E, Wang, W.
Deposit date:2020-09-06
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Targeting KRAS Mutant Cancers via Combination Treatment: Discovery of a 5-Fluoro-4-(3 H )-quinazolinone Aryl Urea pan-RAF Kinase Inhibitor.
J.Med.Chem., 64, 2021
7JZS
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Aminoglycoside N-2'-Acetyltransferase-Ia [AAC(2')-Ia] in complex with CoA
Descriptor: Aminoglycoside 2'-N-acetyltransferase, COENZYME A, DI(HYDROXYETHYL)ETHER, ...
Authors:Park, J, Bassenden, A.V, Berghuis, A.M.
Deposit date:2020-09-02
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural and phylogenetic analyses of resistance to next-generation aminoglycosides conferred by AAC(2') enzymes.
Sci Rep, 11, 2021
1N0O
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NMR Structure of d(CCAAGGXCTTGGG), X is a 3'-phosphoglycolate, 5'-phosphate gapped lesion, 10 structures
Descriptor: 2-PHOSPHOGLYCOLIC ACID, 5'-D(*CP*CP*AP*AP*GP*G)-3', 5'-D(*CP*CP*CP*AP*AP*GP*GP*CP*CP*TP*TP*GP*G)-3', ...
Authors:Junker, H.-D, Hoehn, S.T, Bunt, R.C, Marathius, V, Chen, J, Turner, C.J, Stubbe, J.
Deposit date:2002-10-14
Release date:2003-01-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Synthesis, Characterization, and Solution Structure of Tethered Oligonucleotides Containing an Internal 3'-Phosphoglycolate, 5'-Phosphate Gapped Lesion
Nucleic Acids Res., 30, 2002
2JIS
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BU of 2jis by Molmil
Human cysteine sulfinic acid decarboxylase (CSAD) in complex with PLP.
Descriptor: CYSTEINE SULFINIC ACID DECARBOXYLASE, NITRATE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Collins, R, Moche, M, Arrowsmith, C, Berglund, H, Busam, R, Dahlgren, L.G, Edwards, A, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Hallberg, B.M, Johansson, I, Kallas, A, Karlberg, T, Kotenyova, T, Lehtio, L, Nordlund, P, Nyman, T, Ogg, D, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Tresaugues, L, van den Berg, S, Weigelt, J, Welin, M, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC)
Deposit date:2007-06-30
Release date:2007-08-28
Last modified:2015-04-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Crystal Structure of Human Cysteine Sulfinic Acid Decarboxylase (Csad)
To be Published
1N3T
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BU of 1n3t by Molmil
Biosynthesis of pteridins. Reaction mechanism of GTP cyclohydrolase I
Descriptor: GTP cyclohydrolase I, GUANOSINE-5'-TRIPHOSPHATE
Authors:Rebelo, J, Auerbach, G, Bader, G, Bracher, A, Nar, H, Hoesl, C, Schramek, N, Kaiser, J, Bacher, A, Huber, R, Fischer, M.
Deposit date:2002-10-29
Release date:2003-10-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Biosynthesis of Pteridines. Reaction Mechanism of GTP Cyclohydrolase I
J.MOL.BIOL., 326, 2003
2PMC
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Crystal Structure of CheY-Mg(2+) in Complex with CheZ(C15) Peptide solved from a P1 Crystal
Descriptor: Chemotaxis protein cheY, Chemotaxis protein cheZ, MAGNESIUM ION
Authors:Guhaniyogi, J, Stock, A.M.
Deposit date:2007-04-20
Release date:2008-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.688 Å)
Cite:Interaction of CheY with the C-terminal peptide of CheZ.
J.Bacteriol., 190, 2008
7KBV
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Solution structure of the major MYC promoter G-quadruplex with a wild-type flanking sequence
Descriptor: Myc2345
Authors:Dickerhoff, J, Yang, D.
Deposit date:2020-10-03
Release date:2021-06-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural recognition of the MYC promoter G-quadruplex by a quinoline derivative: insights into molecular targeting of parallel G-quadruplexes.
Nucleic Acids Res., 49, 2021
7KBW
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BU of 7kbw by Molmil
Solution structure of the major MYC promoter G-quadruplex with a wild-type flanking in complex with NSC85697, a quinoline derivative
Descriptor: 2-[(~{E})-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]-1-methyl-quinoline-4-carboxamide, Myc2345
Authors:Dickerhoff, J, Yang, D.
Deposit date:2020-10-03
Release date:2021-06-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural recognition of the MYC promoter G-quadruplex by a quinoline derivative: insights into molecular targeting of parallel G-quadruplexes.
Nucleic Acids Res., 49, 2021
7KBX
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BU of 7kbx by Molmil
Solution structure of the major MYC promoter G-quadruplex in complex with NSC85697, a quinoline derivative
Descriptor: 2-[(~{E})-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]-1-methyl-quinoline-4-carboxamide, Myc2345_T23
Authors:Dickerhoff, J, Yang, D.
Deposit date:2020-10-03
Release date:2021-06-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural recognition of the MYC promoter G-quadruplex by a quinoline derivative: insights into molecular targeting of parallel G-quadruplexes.
Nucleic Acids Res., 49, 2021
1N0K
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BU of 1n0k by Molmil
NMR Structure of duplex DNA d(CCAAGGXCTTGGG), X is a 3' phosphoglycolate, 5'phosphate gapped lesion
Descriptor: 2-PHOSPHOGLYCOLIC ACID, 5'-D(*CP*CP*AP*AP*GP*G)-3', 5'-D(*CP*CP*CP*AP*AP*GP*GP*CP*CP*TP*TP*GP*G)-3', ...
Authors:Junker, H.-D, Hoehn, S.T, Bunt, R.C, Marathius, V, Chen, J, Turner, C.J, Stubbe, J.
Deposit date:2002-10-14
Release date:2003-01-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Synthesis, Characterization and Solution Structure of Tethered Oligonucleotides Containing an Internal 3'-Phosphoglycolate, 5'-Phosphate Gapped Lesion
Nucleic Acids Res., 30, 2002
2JPW
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BU of 2jpw by Molmil
Solution structure of the bisphosphorylated cardiac specific N-extension of cardiac troponin I
Descriptor: Troponin I, cardiac muscle
Authors:Howarth, J.W, Rosevear, P.R, Meller, J, Solaro, R.J, Trewhella, J.
Deposit date:2007-05-24
Release date:2007-12-11
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Phosphorylation-dependent conformational transition of the cardiac specific N-extension of troponin I in cardiac troponin
J.Mol.Biol., 373, 2007
1N3S
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BU of 1n3s by Molmil
Biosynthesis of pteridins. Reaction mechanism of GTP cyclohydrolase I
Descriptor: GTP cyclohydrolase I, GUANOSINE-5'-TRIPHOSPHATE
Authors:Rebelo, J, Auerbach, G, Bader, G, Bracher, A, Nar, H, Hoesl, C, Schramek, N, Kaiser, J, Bacher, A, Huber, R, Fischer, M.
Deposit date:2002-10-29
Release date:2004-03-02
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Biosynthesis of Pteridines. Reaction Mechanism of GTP Cyclohydrolase I
J.MOL.BIOL., 326, 2003
1Q5X
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Structure of OF RRAA (MENG), a protein inhibitor of RNA processing
Descriptor: REGULATOR OF RNASE E ACTIVITY A
Authors:Monzingo, A.F, Gao, J, Qiu, J, Georgiou, G, Robertus, J.D.
Deposit date:2003-08-11
Release date:2003-09-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:The X-ray Structure of Escherichia coli RraA (MenG), A Protein Inhibitor of RNA Processing.
J.Mol.Biol., 332, 2003
5WBQ
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Structure of human Ketohexokinase complexed with hits from fragment screening
Descriptor: 2-ethyl-7-[(3S)-3-hydroxy-3-methylpyrrolidin-1-yl]-5-(trifluoromethyl)-1H-pyrrolo[3,2-b]pyridine-6-carbonitrile, CHLORIDE ION, Ketohexokinase, ...
Authors:Pandit, J.
Deposit date:2017-06-29
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of Fragment-Derived Small Molecules for in Vivo Inhibition of Ketohexokinase (KHK).
J. Med. Chem., 60, 2017
2JS9
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BU of 2js9 by Molmil
Structure of caenopore-5 (81 Pro cis conformer)
Descriptor: Saposin-like protein family protein 5
Authors:Mysliwy, J, Grotzinger, J.
Deposit date:2007-07-02
Release date:2008-10-14
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Caenopore-5: the three-dimensional structure of an antimicrobial protein from Caenorhabditis elegans.
Dev.Comp.Immunol., 34, 2010
3QG2
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BU of 3qg2 by Molmil
Plasmodium falciparum DHFR-TS qradruple mutant (N51I+C59R+S108N+I164L, V1/S) pyrimethamine complex
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 5-(4-CHLORO-PHENYL)-6-ETHYL-PYRIMIDINE-2,4-DIAMINE, Bifunctional dihydrofolate reductase-thymidylate synthase, ...
Authors:Vanichtanankul, J, Yuvaniyama, J, Taweechai, S, Chitnumsub, P, Kamchonwongpaisan, S, Yuthavong, Y.
Deposit date:2011-01-24
Release date:2011-06-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trypanosomal dihydrofolate reductase reveals natural antifolate resistance
Acs Chem.Biol., 6, 2011
5ZGD
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BU of 5zgd by Molmil
hnRNPA1 reversible amyloid core GFGGNDNFG (residues 209-217) determined by X-ray
Descriptor: GLY-PHE-GLY-GLY-ASN-ASP-ASN-PHE-GLY
Authors:Gui, X, Xie, M, Zhao, M, Luo, F, He, J, Li, D, Liu, C.
Deposit date:2018-03-08
Release date:2019-04-03
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Structural basis for reversible amyloids of hnRNPA1 elucidates their role in stress granule assembly.
Nat Commun, 10, 2019
5ZHO
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BU of 5zho by Molmil
Human group C rotavirus VP8*s recognize type A histo-blood group antigens as ligands
Descriptor: Outer capsid protein VP8*, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose
Authors:Sun, X, Duan, Z, Qi, J.
Deposit date:2018-03-13
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Human Group C Rotavirus VP8*s Recognize Type A Histo-Blood Group Antigens as Ligands.
J. Virol., 92, 2018
1M74
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BU of 1m74 by Molmil
Crystal structure of Mg-ADP-bound SecA from Bacillus subtilis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Preprotein translocase secA, ...
Authors:Hunt, J.F, Weinkauf, S, Henry, L, Fak, J.J, McNicholas, P, Oliver, D.B, Deisenhofer, J.
Deposit date:2002-07-16
Release date:2002-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Nucleotide Control of Interdomain Interactions in the Conformational Reaction Cycle of SecA
Science, 297, 2002
1R5G
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BU of 1r5g by Molmil
Crystal Structure of MetAP2 complexed with A311263
Descriptor: (2S,3R)-3-AMINO-2-HYDROXY-5-(ETHYLSULFANYL)PENTANOYL-((S)-(-)-(1-NAPHTHYL)ETHYL)AMIDE, MANGANESE (II) ION, Methionine aminopeptidase 2
Authors:Sheppard, G.S, Wang, J, Kawai, M, BaMaung, N.Y, Craig, R.A, Erickson, S.A, Lynch, L, Patel, J, Yang, F, Searle, X.B, Lou, P, Park, C, Kim, K.H, Henkin, J, Lesniewski, R.
Deposit date:2003-10-10
Release date:2004-10-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:3-Amino-2-hydroxyamides and related compounds as inhibitors of methionine aminopeptidase-2.
Bioorg.Med.Chem.Lett., 14, 2004
3RBN
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BU of 3rbn by Molmil
Crystal structure of MutL protein homolog 1 isoform 1 [Homo sapiens]
Descriptor: DNA mismatch repair protein Mlh1
Authors:Dong, A, Dombrovsky, L, Wernimont, A, Loppnau, P, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2011-03-29
Release date:2011-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of MutL protein homolog 1 isoform 1 [Homo sapiens]
To be Published

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