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PDB: 42706 results

2GNQ
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BU of 2gnq by Molmil
Structure of wdr5
Descriptor: CHLORIDE ION, WD-repeat protein 5
Authors:Min, J, Schuetz, A, Allali-Hassani, A, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-04-10
Release date:2006-06-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for molecular recognition and presentation of histone H3 By WDR5.
Embo J., 25, 2006
2LLI
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BU of 2lli by Molmil
Low resolution structure of RNA-binding subunit of the TRAMP complex
Descriptor: Protein AIR2, ZINC ION
Authors:Holub, P, Lalakova, J, Cerna, H, Sarazova, M, Pasulka, J, Hrazdilova, K, Arce, M.S, Stefl, R, Vanacova, S.
Deposit date:2011-11-10
Release date:2012-03-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation.
Nucleic Acids Res., 40, 2012
2KX6
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BU of 2kx6 by Molmil
Signaling state of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ramachandran, P.L, Lovett, J.E, Carl, P.J, Cammarata, M, Lee, J.H, Yang, J.O, Ihee, H, Timmel, C.R, van Thor, J.
Deposit date:2010-04-27
Release date:2011-06-15
Last modified:2012-07-18
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:The short-lived signaling state of the photoactive yellow protein photoreceptor revealed by combined structural probes.
J.Am.Chem.Soc., 133, 2011
4YJR
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BU of 4yjr by Molmil
SYK kinase domain in complex with inhibitor GTC000225
Descriptor: 3-(1H-indazol-4-yl{2-[(1-methyl-1H-indazol-5-yl)amino]pyrimidin-4-yl}amino)propan-1-ol, Tyrosine-protein kinase SYK
Authors:Somers, D.O, Neu, M, Stuckey, J.
Deposit date:2015-03-03
Release date:2015-09-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Discovery of GSK143, a highly potent, selective and orally efficacious spleen tyrosine kinase inhibitor.
Bioorg. Med. Chem. Lett., 21, 2011
2LSJ
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BU of 2lsj by Molmil
Solution structure of the mouse Rev1 CTD in complex with the Rev1-interacting Region (RIR)of Pol Kappa
Descriptor: DNA polymerase kappa, DNA repair protein REV1
Authors:Liu, J, Wojtaszek, J, Zhou, P.
Deposit date:2012-05-01
Release date:2012-06-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multifaceted recognition of vertebrate Rev1 by translesion polymerases zeta and kappa.
J.Biol.Chem., 287, 2012
5Y5E
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BU of 5y5e by Molmil
Crystal structure of phospholipase A2 with inhibitor
Descriptor: 2-[2-methyl-3-oxamoyl-1-[[2-(trifluoromethyl)phenyl]methyl]indol-4-yl]oxyethanoic acid, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Hou, S, Xu, J, Xu, T, Liu, J.
Deposit date:2017-08-08
Release date:2018-06-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for functional selectivity and ligand recognition revealed by crystal structures of human secreted phospholipase A2group IIE
Sci Rep, 7, 2017
6MX9
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BU of 6mx9 by Molmil
Lysozyme bound to 3-Aminophenol
Descriptor: 1,2-ETHANEDIOL, 3-aminophenol, BENZAMIDINE, ...
Authors:Blackburn, A, Partowmah, S.H, Brennan, H.M, Mestizo, K.E, Stivala, C.D, Petreczky, J, Perez, A, Horn, A, McSweeney, S.
Deposit date:2018-10-30
Release date:2018-12-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A simple technique to improve microcrystals using gel exclusion of nucleation inducing elements
To Be Published
2KQE
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BU of 2kqe by Molmil
Second PBZ domain of human APLF protein in complex with ribofuranosyladenosine
Descriptor: ADENOSINE, Aprataxin and PNK-like factor, ZINC ION, ...
Authors:Neuhaus, D, Eustermann, S, Brockmann, C, Yang, J.
Deposit date:2009-11-04
Release date:2010-01-19
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structures of the two PBZ domains from human APLF and their interaction with poly(ADP-ribose).
Nat.Struct.Mol.Biol., 17, 2010
2KRO
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BU of 2kro by Molmil
RDC refined high resolution structure of the third SH3 domain of CD2AP
Descriptor: CD2-associated protein
Authors:Ortega Roldan, J, Azuaga, A.I, van Nuland, N.A.J, Blackledge, M.
Deposit date:2009-12-21
Release date:2011-01-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure, Dynamics and Thermodynamics of the three SH3 domains of CD2AP
To be Published
4MF5
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BU of 4mf5 by Molmil
Crystal structure of glutathione transferase BgramDRAFT_1843 from Burkholderia graminis, Target EFI-507289, with traces of one GSH bound
Descriptor: FORMIC ACID, GLUTATHIONE, Glutathione S-transferase domain
Authors:Patskovsky, Y, Vetting, M.W, Toro, R, Bhosle, R, Al Obaidi, N, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Armstrong, R.N, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-08-27
Release date:2013-09-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Crystal structure of glutathione transferase BgramDRAFT_1843 from Burkholderia graminis, Target EFI-507289, with traces of one GSH bound
To be Published
2KTE
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BU of 2kte by Molmil
The solution structure of Bacillus subtilis, YndB, Northeast Structural Genomics Consoritum Target SR211
Descriptor: Uncharacterized protein yndB
Authors:Mercier, K.A, Mueller, G.A, Powers, R, Acton, T.B, Ciano, M, Ho, C, Lui, J, Ma, L, Rost, B, Rossi, R, Montelione, G.T, Xiao, R, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-01-29
Release date:2010-06-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure and function of YndB, an AHSA1 protein from Bacillus subtilis.
Proteins, 78, 2010
6N3N
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BU of 6n3n by Molmil
Identification of novel, potent and selective GCN2 inhibitors as first-in-class anti-tumor agents
Descriptor: N-{3-[(2-aminopyrimidin-5-yl)ethynyl]-2,4-difluorophenyl}-2,5-dichloro-3-(hydroxymethyl)benzene-1-sulfonamide, eIF-2-alpha kinase GCN2,eIF-2-alpha kinase GCN2
Authors:Hoffman, I.D, Fujimoto, J, Kurasawa, O, Takagi, T, Klein, M.G, Kefala, G, Ding, S.C, Cary, D.R, Mizojiri, R.
Deposit date:2018-11-15
Release date:2019-10-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Identification of Novel, Potent, and Orally Available GCN2 Inhibitors with Type I Half Binding Mode.
Acs Med.Chem.Lett., 10, 2019
3DKF
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BU of 3dkf by Molmil
Structure of MET receptor tyrosine kinase in complex with inhibitor SGX-523
Descriptor: 6-{[6-(1-methyl-1H-pyrazol-4-yl)[1,2,4]triazolo[4,3-b]pyridazin-3-yl]sulfanyl}quinoline, CHLORIDE ION, Hepatocyte growth factor receptor
Authors:Hendle, J.
Deposit date:2008-06-24
Release date:2009-07-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo.
Mol.Cancer Ther., 8, 2009
6MTE
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BU of 6mte by Molmil
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Descriptor: 18S rRNA, 28S rRNA, 5.8S rRNA, ...
Authors:Brown, A, Baird, M.R, Yip, M.C.J, Murray, J, Shao, S.
Deposit date:2018-10-19
Release date:2018-11-21
Last modified:2019-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of translationally inactive mammalian ribosomes.
Elife, 7, 2018
2KY9
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BU of 2ky9 by Molmil
Solution NMR Structure of ydhK C-terminal Domain from B.subtilis, Northeast Structural Genomics Consortium Target Target SR518
Descriptor: Uncharacterized protein ydhK
Authors:Eletsky, A, Sukumaran, D.K, Lee, H, Lee, D, Ciccosanti, C, Janjua, H, Liu, J, Rost, B, Acton, T.B, Xiao, R, Everett, J.K, Prestegard, J.H, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-05-21
Release date:2010-07-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The copBL operon protects Staphylococcus aureus from copper toxicity: CopL is an extracellular membrane-associated copper-binding protein.
J.Biol.Chem., 294, 2019
2LSG
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BU of 2lsg by Molmil
Solution structure of the mouse Rev1 C-terminal domain
Descriptor: DNA repair protein REV1
Authors:Liu, J, Wojtaszek, J, Zhou, P.
Deposit date:2012-04-30
Release date:2012-06-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multifaceted recognition of vertebrate Rev1 by translesion polymerases zeta and kappa.
J.Biol.Chem., 287, 2012
6N9K
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BU of 6n9k by Molmil
Beta-lactamase from Escherichia coli str. Sakai
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, GLYCEROL, ...
Authors:Osipiuk, J, Wu, R, Endres, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-12-03
Release date:2018-12-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Beta-lactamase from Escherichia coli str. Sakai
to be published
6N42
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BU of 6n42 by Molmil
Crystal structure of cysteine-bound ferrous form of the crosslinked human cysteine dioxygenase in the anaerobic condition
Descriptor: CYSTEINE, Cysteine dioxygenase type 1, FE (II) ION, ...
Authors:Liu, A, Li, J.
Deposit date:2018-11-16
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Probing the Cys-Tyr Cofactor Biogenesis in Cysteine Dioxygenase by the Genetic Incorporation of Fluorotyrosine.
Biochemistry, 58, 2019
6MO2
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BU of 6mo2 by Molmil
Structure of dengue virus protease with an allosteric Inhibitor that blocks replication
Descriptor: 1-(4-{5-[(piperidin-4-yl)methoxy]-3-[4-(1H-pyrazol-4-yl)phenyl]pyrazin-2-yl}phenyl)methanamine, FLAVIVIRUS_NS2B/Peptidase S7
Authors:Lin, Y.-L, Nie, S, Hua, Y, Wu, J, Wu, F, Huo, T, Yao, Y, Song, Y.
Deposit date:2018-10-03
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Discovery, X-ray Crystallography and Antiviral Activity of Allosteric Inhibitors of Flavivirus NS2B-NS3 Protease.
J.Am.Chem.Soc., 141, 2019
2HEI
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BU of 2hei by Molmil
Crystal structure of human RAB5B in complex with GDP
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, GUANOSINE-5'-DIPHOSPHATE, Ras-related protein Rab-5B
Authors:Hong, B, Shen, L, Wang, J, Tempel, W, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2006-06-21
Release date:2006-07-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of human RAB5B in complex with GDP
To be Published
6N58
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BU of 6n58 by Molmil
Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation II
Descriptor: CHAPSO, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Chen, J, Chiu, C.E, Campbell, E.A, Darst, S.A.
Deposit date:2018-11-21
Release date:2020-02-26
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:E. coliTraR allosterically regulates transcription initiation by altering RNA polymerase conformation.
Elife, 8, 2019
2KX5
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BU of 2kx5 by Molmil
Recognition of HIV TAR RNA by peptide mimetic of Tat protein
Descriptor: Cyclic peptide mimetic of Tat protein, HIV TAR RNA
Authors:Davidson, A, Patora-Komisarska, K, Robinson, J, Varani, G.
Deposit date:2010-04-26
Release date:2010-07-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Essential structural requirements for specific recognition of HIV TAR RNA by peptide mimetics of Tat protein.
Nucleic Acids Res., 39, 2011
6MQK
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BU of 6mqk by Molmil
Crystal Structure of GTPase Domain of Human Septin 12 in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Septin-12
Authors:Castro, D.K.S.V, Pereira, H.M, Brandao-Neto, J, Ulian, A.P.U, Garratt, R.C.
Deposit date:2018-10-10
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:A complete compendium of crystal structures for the human SEPT3 subgroup reveals functional plasticity at a specific septin interface.
Iucrj, 7, 2020
5YLF
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BU of 5ylf by Molmil
MCR-1 complex with D-glucose
Descriptor: Probable phosphatidylethanolamine transferase Mcr-1, ZINC ION, beta-D-glucopyranose
Authors:Wei, P.C, Song, G.J, Shi, M.Y, Zhou, Y.F, Liu, Y, Lei, J, Chen, P, Yin, L.
Deposit date:2017-10-17
Release date:2017-11-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate analog interaction with MCR-1 offers insight into the rising threat of the plasmid-mediated transferable colistin resistance.
FASEB J., 32, 2018
2KX9
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BU of 2kx9 by Molmil
Solution Structure of the Enzyme I dimer Using Residual Dipolar Couplings and Small Angle X-Ray Scattering
Descriptor: Phosphoenolpyruvate-protein phosphotransferase
Authors:Schwieters, C.D, Suh, J, Grishaev, A, Takayama, Y, Guirlando, R, Clore, G.
Deposit date:2010-04-29
Release date:2010-09-15
Last modified:2024-05-01
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution structure of the 128 kDa enzyme I dimer from Escherichia coli and its 146 kDa complex with HPr using residual dipolar couplings and small- and wide-angle X-ray scattering.
J.Am.Chem.Soc., 132, 2010

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