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PDB: 384 results

8YJ7
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Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
Descriptor: Iron ABC transporter substrate-binding lipoprotein MtsA, ZINC ION, scFv13
Authors:Ito, S, Nagatoishi, S, Nakakido, M, Tsumoto, K.
Deposit date:2024-03-01
Release date:2024-06-19
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Characterization of a novel format scFv×VHH single-chain biparatopic antibody against metal binding protein MtsA.
Protein Sci., 33, 2024
8YJ8
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Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
Descriptor: Iron ABC transporter substrate-binding lipoprotein MtsA, VHH43, ZINC ION
Authors:Ito, S, Nagatoishi, S, Nakakido, M, Tsumoto, K.
Deposit date:2024-03-01
Release date:2024-06-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Characterization of a novel format scFv×VHH single-chain biparatopic antibody against metal binding protein MtsA.
Protein Sci., 33, 2024
8YJ5
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BU of 8yj5 by Molmil
Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
Descriptor: Iron ABC transporter substrate-binding lipoprotein MtsA, VHH43
Authors:Ito, S, Nagatoishi, S, Nakakido, M, Tsumoto, K.
Deposit date:2024-03-01
Release date:2024-06-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.66 Å)
Cite:Characterization of a novel format scFv×VHH single-chain biparatopic antibody against metal binding protein MtsA.
Protein Sci., 33, 2024
8YJ6
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BU of 8yj6 by Molmil
Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
Descriptor: Iron ABC transporter substrate-binding lipoprotein MtsA, ZINC ION
Authors:Ito, S, Nagatoishi, S, Nakakido, M, Tsumoto, K.
Deposit date:2024-03-01
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Characterization of a novel format scFv×VHH single-chain biparatopic antibody against metal binding protein MtsA.
Protein Sci., 33, 2024
6M5D
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BU of 6m5d by Molmil
Human serum albumin (apo form)
Descriptor: PHOSPHATE ION, Serum albumin
Authors:Ito, S, Senoo, A, Nagatoishi, S, Yamamoto, M, Tsumoto, K, Wakui, N.
Deposit date:2020-03-10
Release date:2020-11-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for the Binding Mechanism of Human Serum Albumin Complexed with Cyclic Peptide Dalbavancin.
J.Med.Chem., 63, 2020
6M5E
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Human serum albumin with cyclic peptide dalbavancin
Descriptor: (2S,5S)-5-azanyl-3,4,6-tris(oxidanyl)oxane-2-carboxylic acid, 10-METHYLUNDECANOIC ACID, 2-amino-2-deoxy-beta-D-altropyranuronic acid, ...
Authors:Ito, S, Senoo, A, Nagatoishi, S, Ohue, M, Yamamoto, M, Tsumoto, K, Wakui, N.
Deposit date:2020-03-10
Release date:2020-11-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for the Binding Mechanism of Human Serum Albumin Complexed with Cyclic Peptide Dalbavancin.
J.Med.Chem., 63, 2020
1IT9
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BU of 1it9 by Molmil
CRYSTAL STRUCTURE OF AN ANTIGEN-BINDING FRAGMENT FROM A HUMANIZED VERSION OF THE ANTI-HUMAN FAS ANTIBODY HFE7A
Descriptor: HUMANIZED ANTIBODY HFE7A, HEAVY CHAIN, LIGHT CHAIN
Authors:Ito, S, Takayama, T, Hanzawa, H, Takahashi, T, Miyadai, K, Serizawa, N, Hata, T, Haruyama, H.
Deposit date:2002-01-11
Release date:2003-02-25
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Humanization of the Mouse Anti-Fas Antibody HFE7A and Crystal Structure of the Humanized HFE7A Fab Fragment
BIOL.PHARM.BULL., 25, 2002
1UA4
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BU of 1ua4 by Molmil
Crystal Structure of an ADP-dependent Glucokinase from Pyrococcus furiosus
Descriptor: ADENOSINE MONOPHOSPHATE, ADP-dependent glucokinase, alpha-D-glucopyranose, ...
Authors:Ito, S, Jeong, J.J, Yoshioka, I, Koga, S, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2003-02-27
Release date:2004-02-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of an ADP-dependent glucokinase from Pyrococcus furiosus: implications for a sugar-induced conformational change in ADP-dependent kinase
J.Mol.Biol., 331, 2003
1IQW
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BU of 1iqw by Molmil
CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE MOUSE ANTI-HUMAN FAS ANTIBODY HFE7A
Descriptor: ANTIBODY M-HFE7A, HEAVY CHAIN, LIGHT CHAIN
Authors:Ito, S, Takayama, T, Hanzawa, H, Ichikawa, K, Ohsumi, J, Serizawa, N, Hata, T, Haruyama, H.
Deposit date:2001-08-10
Release date:2002-01-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the antigen-binding fragment of apoptosis-inducing mouse anti-human Fas monoclonal antibody HFE7A.
J.Biochem., 131, 2002
2Z7W
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BU of 2z7w by Molmil
Crystal Structure of H2O2 treated Cu,Zn-SOD
Descriptor: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
Authors:Ito, S, Ishii, T, Uchida, K.
Deposit date:2007-08-29
Release date:2008-09-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
1IQA
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BU of 1iqa by Molmil
CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF MOUSE RANK LIGAND
Descriptor: RECEPTOR ACTIVATOR OF NUCLEAR FACTOR KAPPA B LIGAND
Authors:Ito, S, Wakabayashi, K, Ubukata, O, Hayashi, S, Okada, F, Hata, T.
Deposit date:2001-07-11
Release date:2002-03-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the extracellular domain of mouse RANK ligand at 2.2-A resolution.
J.Biol.Chem., 277, 2002
3A5J
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BU of 3a5j by Molmil
Crystal structure of protein-tyrosine phosphatase 1B
Descriptor: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Ito, S.
Deposit date:2009-08-08
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Post-translational modification of a non-catalytic Cys121 of PTP1B
To be Published
2Z7Z
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BU of 2z7z by Molmil
Crystal Structure of H2O2 treated Cu,Zn-SOD
Descriptor: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
Authors:Ito, S, Ishii, T, Uchida, K.
Deposit date:2007-08-30
Release date:2008-09-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
2Z7Y
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BU of 2z7y by Molmil
Crystal Structure of H2O2 treated Cu,Zn-SOD
Descriptor: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
Authors:Ito, S, Ishii, T, Uchida, K.
Deposit date:2007-08-30
Release date:2008-09-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
2ZOW
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BU of 2zow by Molmil
Crystal Structure of H2O2 treated Cu,Zn-SOD
Descriptor: COPPER (I) ION, Superoxide dismutase [Cu-Zn], ZINC ION
Authors:Ito, S, Ishii, T, Sakai, H, Uchida, K.
Deposit date:2008-06-11
Release date:2009-06-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structures of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
2Z7U
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BU of 2z7u by Molmil
Crystal Structure of H2O2 treated Cu,Zn-SOD
Descriptor: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
Authors:Ito, S, Ishii, T, Uchida, K.
Deposit date:2007-08-28
Release date:2008-09-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
3A5K
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BU of 3a5k by Molmil
Crystal structure of protein-tyrosine phosphatase 1B
Descriptor: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Ito, S.
Deposit date:2009-08-08
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Post-translational modification of a non-catalytic Cys121 of PTP1B
To be Published
7E2E
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BU of 7e2e by Molmil
Crystal structure of the Estrogen-Related Receptor alpha (ERRalpha) ligand-binding domain (LBD) in complex with an agonist DS45500853 and a PGC-1alpha peptide
Descriptor: 1-[4-(3-tert-butyl-4-oxidanyl-phenoxy)phenyl]ethanone, IODIDE ION, Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, ...
Authors:Ito, S, Shinozuka, T, Kimura, T, Izumi, M, Wakabayashi, K.
Deposit date:2021-02-05
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Discovery of a Novel Class of ERR alpha Agonists.
Acs Med.Chem.Lett., 12, 2021
3A73
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BU of 3a73 by Molmil
Crystal Structure Analysis of Human serum albumin complexed with delta 12-prostaglandin J2
Descriptor: (5Z,12Z,15S)-15-hydroxy-11-oxoprosta-5,9,12-trien-1-oic acid, MYRISTIC ACID, Serum albumin
Authors:Ito, S.
Deposit date:2009-09-11
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Delta12-prostaglandin J2 as a product and ligand of human serum albumin: formation of an unusual covalent adduct at His146.
J.Am.Chem.Soc., 132, 2010
7DA0
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BU of 7da0 by Molmil
High-resolution crystal structure of the chicken MHF complex
Descriptor: Centromere protein S, Centromere protein X
Authors:Ito, S, Nishino, T.
Deposit date:2020-10-14
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural analysis of the chicken FANCM-MHF complex and its stability.
Acta Crystallogr.,Sect.F, 77, 2021
7DA1
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BU of 7da1 by Molmil
Crystal structure of the chicken MHF complex
Descriptor: Centromere protein S, Centromere protein X
Authors:Ito, S, Nishino, T.
Deposit date:2020-10-14
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural analysis of the chicken FANCM-MHF complex and its stability.
Acta Crystallogr.,Sect.F, 77, 2021
2DDQ
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BU of 2ddq by Molmil
Crystal Structure of the Fab fragment of a R310 antibody complexed with (R)-HNE-histidine adduct
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-ACETYL-1-[(2R,3S,5R)-5-HYDROXY-2-PENTYLTETRAHYDROFURAN-3-YL]-L-HISTIDINE, R310 antibody heavy chain, ...
Authors:Ito, S.
Deposit date:2006-02-02
Release date:2006-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Bispecific abs against modified protein and DNA with oxidized lipids
Proc.Natl.Acad.Sci.Usa, 103, 2006
1GC5
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BU of 1gc5 by Molmil
CRYSTAL STRUCTURE OF A NOVEL ADP-DEPENDENT GLUCOKINASE FROM THERMOCOCCUS LITORALIS
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADP-DEPENDENT GLUCOKINASE
Authors:Ito, S, Fushinobu, S, Yoshioka, I, Koga, S, Matsuzawa, H, Wakagi, T.
Deposit date:2000-07-20
Release date:2001-07-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for the ADP-Specificity of a Novel Glucokinase from a Hyperthermophilic Archaeon
Structure, 9, 2001
8YXK
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BU of 8yxk by Molmil
X-ray structure of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Descriptor: Phage cell wall hydrolase
Authors:Kamitori, S, Tamai, E.
Deposit date:2024-04-02
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
8YXN
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BU of 8yxn by Molmil
X-ray structure of Clostridium perfringens autolysin catalytic domain in the P1 form
Descriptor: Cell surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2024-04-02
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024

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PDB entries from 2024-10-30

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