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PDB: 72 results

1UAX
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BU of 1uax by Molmil
Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
Descriptor: Ribonuclease HII
Authors:Hata, T, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2003-03-24
Release date:2004-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
To be published
5D97
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BU of 5d97 by Molmil
Neutron crystal structure of H2O-solvent ribonuclease A
Descriptor: ISOPROPYL ALCOHOL, Ribonuclease pancreatic
Authors:Chatake, T, Fujiwara, S.
Deposit date:2015-08-18
Release date:2016-04-06
Last modified:2018-12-05
Method:NEUTRON DIFFRACTION (1.8 Å)
Cite:A technique for determining the deuterium/hydrogen contrast map in neutron macromolecular crystallography
Acta Crystallogr D Struct Biol, 72, 2016
8CQ3
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BU of 8cq3 by Molmil
Bifunctional chorismate mutase/cyclohexadienyl dehydratase from Aequoribacter fuscus
Descriptor: ACETATE ION, CHLORIDE ION, chorismate mutase
Authors:Khatanbaatar, T, Cordara, G, Krengel, U.
Deposit date:2023-03-03
Release date:2023-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Novel exported fusion enzymes with chorismate mutase and cyclohexadienyl dehydratase activity: Shikimate pathway enzymes teamed up in no man's land.
J.Biol.Chem., 299, 2023
8CQ4
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BU of 8cq4 by Molmil
Bifunctional cyclohexadienyl dehydratase/chorismate mutase from Janthinobacterium sp. HH01
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Bifunctional cyclohexadienyl dehydratase/chorismate mutase from Janthinobacterium sp. HH01
Authors:Khatanbaatar, T, Cordara, G, Krengel, U.
Deposit date:2023-03-03
Release date:2023-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Novel exported fusion enzymes with chorismate mutase and cyclohexadienyl dehydratase activity: Shikimate pathway enzymes teamed up in no man's land.
J.Biol.Chem., 299, 2023
8CQ6
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BU of 8cq6 by Molmil
Bifunctional cyclohexadienyl dehydratase/chorismate mutase from Duganella sacchari
Descriptor: CHLORIDE ION, SODIUM ION, chorismate mutase
Authors:Khatanbaatar, T, Cordara, G, Krengel, U.
Deposit date:2023-03-03
Release date:2023-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Novel exported fusion enzymes with chorismate mutase and cyclohexadienyl dehydratase activity: Shikimate pathway enzymes teamed up in no man's land.
J.Biol.Chem., 299, 2023
4FS6
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BU of 4fs6 by Molmil
Crystal structure of the Z-DNA hexamer CGCGCG at 500 mM CaCl2
Descriptor: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
Authors:Chatake, T, Sunami, T.
Deposit date:2012-06-27
Release date:2013-05-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Direct interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl2 and CaCl2
J.Inorg.Biochem., 124, 2013
4FS5
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BU of 4fs5 by Molmil
Crystal structure of the Z-DNA hexamer CGCGCG at 500 mM MgCl2
Descriptor: CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chatake, T, Sunami, T.
Deposit date:2012-06-26
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Direct interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl2 and CaCl2
J.Inorg.Biochem., 124, 2013
6YGT
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BU of 6ygt by Molmil
Crystal structure of variant T52P of the intracellular chorismate mutase from Mycobacterium tuberculosis
Descriptor: Intracellular chorismate mutase
Authors:Khatanbaatar, T, Thorbjornsrud, H.V, Cordara, G, Krengel, U.
Deposit date:2020-03-27
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.635 Å)
Cite:Crystal structure of variant T52P of the intracellular chorismate mutase from Mycobacterium tuberculosis
To Be Published
4DWW
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BU of 4dww by Molmil
Crystal Structure of Nattokinase from Bacillus subtilis natto
Descriptor: CALCIUM ION, Subtilisin NAT
Authors:Chatake, T, Yanagisawa, Y.
Deposit date:2012-02-27
Release date:2012-03-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Purification, crystallization and preliminary X-ray diffraction experiment of nattokinase from Bacillus subtilis natto
Acta Crystallogr.,Sect.F, 66, 2010
4ZZ4
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BU of 4zz4 by Molmil
Neutron crystal structure of ribonuclease A determined by the real space D/H contrast method
Descriptor: ISOPROPYL ALCOHOL, Ribonuclease pancreatic
Authors:Chatake, T, Fujiwara, S.
Deposit date:2015-05-22
Release date:2016-04-06
Last modified:2023-11-08
Method:NEUTRON DIFFRACTION (1.798 Å)
Cite:A technique for determining the deuterium/hydrogen contrast map in neutron macromolecular crystallography
Acta Crystallogr D Struct Biol, 72, 2016
7VEI
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BU of 7vei by Molmil
Neutron structure of D2O-solvent lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, NICKEL (II) ION
Authors:Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S.
Deposit date:2021-09-08
Release date:2022-04-06
Last modified:2023-11-29
Method:NEUTRON DIFFRACTION (2 Å)
Cite:Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography.
Acta Crystallogr D Struct Biol, 78, 2022
5D6U
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BU of 5d6u by Molmil
X-ray crystal structure of ribonuclease A determined for the real space D/H contrast method
Descriptor: ISOPROPYL ALCOHOL, Ribonuclease pancreatic
Authors:Chatake, T, Fujiwara, S.
Deposit date:2015-08-13
Release date:2016-04-06
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:A technique for determining the deuterium/hydrogen contrast map in neutron macromolecular crystallography
Acta Crystallogr D Struct Biol, 72, 2016
3ALU
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BU of 3alu by Molmil
Crystal structure of CEL-IV complexed with Raffinose
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Lectin CEL-IV, ...
Authors:Hatakeyama, T, Hozawa, T, Ishii, K, Kamiya, T, Goda, S, Kusunoki, M, Unno, H.
Deposit date:2010-08-07
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif
J.Biol.Chem., 286, 2011
3AJ8
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BU of 3aj8 by Molmil
X-ray analysis of Crystal of Proteinase K Obtained from H2O Solution Using PEG 8000
Descriptor: CALCIUM ION, GLYCEROL, Proteinase K
Authors:Chatake, T, Ishikawa, T, Morimoto, Y.
Deposit date:2010-05-27
Release date:2011-06-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
3ALT
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BU of 3alt by Molmil
Crystal structure of CEL-IV complexed with Melibiose
Descriptor: CALCIUM ION, Lectin CEL-IV, C-type, ...
Authors:Hatakeyama, T, Hozawa, T, Ishii, K, Kamiya, T, Goda, S, Kusunoki, M, Unno, H.
Deposit date:2010-08-07
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif
J.Biol.Chem., 286, 2011
3ALS
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BU of 3als by Molmil
Crystal structure of CEL-IV
Descriptor: CALCIUM ION, Lectin CEL-IV, C-type
Authors:Hatakeyama, T, Hozawa, T, Ishii, K, Kamiya, T, Goda, S, Kusunoki, M, Unno, H.
Deposit date:2010-08-07
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate recognition motif
J.Biol.Chem., 286, 2011
3AJ9
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BU of 3aj9 by Molmil
X-ray analysis of Crystal of Proteinase K Obtained from D2O Solution Using PEG 8000
Descriptor: CALCIUM ION, GLYCEROL, Proteinase K
Authors:Chatake, T, Ishikawa, T, Morimoto, Y.
Deposit date:2010-05-27
Release date:2011-06-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
2Z48
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BU of 2z48 by Molmil
Crystal Structure of Hemolytic Lectin CEL-III Complexed with GalNac
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-galactopyranose, CALCIUM ION, ...
Authors:Hatakeyama, T, Unno, H, Eto, S, Hidemura, H, Uchida, T, Kouzuma, Y.
Deposit date:2007-06-13
Release date:2007-10-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:C-type lectin-like carbohydrate-recognition of the hemolytic lectin CEL-III containing ricin-type beta-trefoil folds
J.Biol.Chem., 282, 2007
7CCN
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BU of 7ccn by Molmil
The binding structure of a lanthanide binding tag (LBT3) with lutetium ion (Lu3+)
Descriptor: LBT3, LUTETIUM (III) ION
Authors:Hatanaka, T, Kikkawa, N, Matsugami, A, Hosokawa, Y, Hayashi, F, Ishida, N.
Deposit date:2020-06-17
Release date:2021-04-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The origins of binding specificity of a lanthanide ion binding peptide.
Sci Rep, 10, 2020
7FCW
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BU of 7fcw by Molmil
X-ray structure of H2O-solvent lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, NICKEL (II) ION
Authors:Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S.
Deposit date:2021-07-15
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography.
Acta Crystallogr D Struct Biol, 78, 2022
7FCU
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BU of 7fcu by Molmil
X-ray structure of D2O-solvent lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, NICKEL (II) ION
Authors:Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S.
Deposit date:2021-07-15
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography.
Acta Crystallogr D Struct Biol, 78, 2022
7CCO
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BU of 7cco by Molmil
The binding structure of a lanthanide binding tag (LBT3) with lanthanum ion (La3+)
Descriptor: LANTHANUM (III) ION, LBT3
Authors:Hatanaka, T, Kikkawa, N, Matsugami, A, Hosokawa, Y, Hayashi, F, Ishida, N.
Deposit date:2020-06-17
Release date:2021-04-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The origins of binding specificity of a lanthanide ion binding peptide.
Sci Rep, 10, 2020
2Z49
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BU of 2z49 by Molmil
Crystal Structure of Hemolytic Lectin CEL-III Complexed with methyl-alpha-D-galactopylanoside
Descriptor: CALCIUM ION, Hemolytic lectin CEL-III, MAGNESIUM ION, ...
Authors:Hatakeyama, T, Unno, H, Eto, S, Hidemura, H, Uchida, T, Kouzuma, Y.
Deposit date:2007-06-13
Release date:2007-10-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:C-type lectin-like carbohydrate-recognition of the hemolytic lectin CEL-III containing ricin-type beta-trefoil folds
J.Biol.Chem., 282, 2007
1V9G
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BU of 1v9g by Molmil
Neutron Crystallographic analysis of the Z-DNA hexamer CGCGCG
Descriptor: 5'-D(*CP*GP*CP*GP*CP*G)-3', N,N'-BIS(3-AMMONIOPROPYL)BUTANE-1,4-DIAMINIUM
Authors:Chatake, T, Tanaka, I, Niimura, N.
Deposit date:2004-01-26
Release date:2005-01-26
Last modified:2023-10-25
Method:NEUTRON DIFFRACTION (1.8 Å)
Cite:The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique.
Acta Crystallogr.,Sect.D, 61, 2005
457D
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BU of 457d by Molmil
MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA
Descriptor: DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chatake, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:1999-03-06
Release date:2000-01-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis.
J.Mol.Biol., 294, 1999

 

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