Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17801 件

5AKA
DownloadVisualize
BU of 5aka by Molmil
EM structure of ribosome-SRP-FtsY complex in closed state
分子名称: 23S ribosomal RNA, 4.5S ribosomal RNA, 50S RIBOSOMAL PROTEIN L11, ...
著者von Loeffelholz, O, Jiang, Q, Ariosa, A, Karuppasamy, M, Huard, K, Berger, I, Shan, S, Schaffitzel, C.
登録日2015-03-03
公開日2015-03-25
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (5.7 Å)
主引用文献Ribosome-Srp-Ftsy Cotranslational Targeting Complex in the Closed State.
Proc.Natl.Acad.Sci.USA, 112, 2015
5IP1
DownloadVisualize
BU of 5ip1 by Molmil
Tomato spotted wilt tospovirus nucleocapsid protein
分子名称: Nucleoprotein
著者Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M.
登録日2016-03-09
公開日2017-03-22
最終更新日2018-03-21
実験手法X-RAY DIFFRACTION (2.703 Å)
主引用文献Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus.
J. Virol., 91, 2017
6SIV
DownloadVisualize
BU of 6siv by Molmil
Structure of HPV16 E6 oncoprotein in complex with mutant IRF3 LxxLL motif
分子名称: Maltose/maltodextrin-binding periplasmic protein,Interferon regulatory factor 3, Protein E6, ZINC ION, ...
著者Suarez, I.P, Cousido-Siah, A, Bonhoure, A, Mitschler, A, Podjarny, A, Trave, G.
登録日2019-08-12
公開日2019-08-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.752 Å)
主引用文献Deciphering the molecular and structural interaction between IRF3 and HPV16 E6
To be published
5DWC
DownloadVisualize
BU of 5dwc by Molmil
Crystal structure of restriction endonuclease AgeI
分子名称: Type-2 restriction enzyme AgeI
著者Tamulaitiene, G, Ramonaite, I, Grazulis, S, Siksnys, V.
登録日2015-09-22
公開日2016-09-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA.
Nucleic Acids Res., 45, 2017
5E1Y
DownloadVisualize
BU of 5e1y by Molmil
PDZ2 of LNX2 at 277K, model with alternate conformations
分子名称: Ligand of Numb protein X 2
著者Hekstra, D.R, White, K.I, Socolich, M.A, Ranganathan, R.
登録日2015-09-30
公開日2016-12-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.011 Å)
主引用文献Electric-field-stimulated protein mechanics.
Nature, 540, 2016
4E1I
DownloadVisualize
BU of 4e1i by Molmil
Fragment of human prion protein
分子名称: Major prion protein
著者Apostol, M.I, Surewicz, W.K.
登録日2012-03-06
公開日2013-03-06
最終更新日2013-11-27
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Crystal structure of a human prion protein fragment reveals a motif for oligomer formation.
J.Am.Chem.Soc., 135, 2013
5A1P
DownloadVisualize
BU of 5a1p by Molmil
Crystal structure of cytochrome P450 3A4 bound to progesterone and citrate
分子名称: CITRIC ACID, CYTOCHROME P450 3A4, PROGESTERONE, ...
著者Sevrioukova, I, Poulos, T.
登録日2015-05-04
公開日2015-06-24
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Anion-Dependent Stimulation of Cyp3A4 Monooxygenase.
Biochemistry, 54, 2015
4JBY
DownloadVisualize
BU of 4jby by Molmil
Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with F-SK78
分子名称: 1,2-ETHANEDIOL, 6-[(1Z)-3-fluoro-2-(hydroxymethyl)prop-1-en-1-yl]-1,5-dimethylpyrimidine-2,4(1H,3H)-dione, SULFATE ION, ...
著者Pernot, L, Novakovic, I, Westermaier, Y, Perozzo, R, Raic-Malic, S, Scapozza, L.
登録日2013-02-20
公開日2013-03-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献New thymine derivatives as HSV1-TK ligand for the development of PET imaging tracer
To be Published
8P7W
DownloadVisualize
BU of 8p7w by Molmil
Structure of 5D3-Fab and nanobody(Nb8)-bound ABCG2
分子名称: 5D3(Fab) heavy chain variable domain, 5D3(Fab) light chain variable domain, ATP-binding cassette sub-family G member 2, ...
著者Irobalieva, R.N, Manolaridis, I, Jackson, S.M, Ni, D, Pardon, E, Stahlberg, H, Steyaert, J, Locher, K.P.
登録日2023-05-31
公開日2023-08-30
最終更新日2023-09-13
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Structural Basis of the Allosteric Inhibition of Human ABCG2 by Nanobodies.
J.Mol.Biol., 435, 2023
4E1A
DownloadVisualize
BU of 4e1a by Molmil
Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis at 1.62A resolution
分子名称: GLYCEROL, Phosphopantetheine adenylyltransferase
著者Timofeev, V.I, Smirnova, E.A, Chupova, L.A, Esipov, R.S, Kuranova, I.P.
登録日2012-03-06
公開日2012-11-21
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献X-ray study of the conformational changes in the molecule of phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis during the catalyzed reaction.
Acta Crystallogr.,Sect.D, 68, 2012
6SBW
DownloadVisualize
BU of 6sbw by Molmil
CdbA Form One
分子名称: CdbA
著者Lovering, A.L, Cadby, I.T.
登録日2019-07-22
公開日2020-04-22
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献CdbA is a DNA-binding protein and c-di-GMP receptor important for nucleoid organization and segregation in Myxococcus xanthus.
Nat Commun, 11, 2020
5A7W
DownloadVisualize
BU of 5a7w by Molmil
Crystal structure of human JMJD2A in complex with compound 35
分子名称: 1,2-ETHANEDIOL, 2-[5-[(4-hydroxyphenyl)carbonylamino]-2-oxidanyl-phenyl]pyridine-4-carboxylic acid, DIMETHYL SULFOXIDE, ...
著者Nowak, R, Velupillai, S, Krojer, T, Gileadi, C, Johansson, C, Korczynska, M, Le, D.D, Younger, N, Gregori-Puigjane, E, Tumber, A, Iwasa, E, Pollock, S.B, Ortiz Torres, I, Kopec, J, Tallant, C, Froese, S, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Shoichet, B.K, Fujimori, D.G, Oppermann, U.
登録日2015-07-10
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Docking and Linking of Fragments to Discover Jumonji Histone Demethylase Inhibitors.
J.Med.Chem., 59, 2016
3W4K
DownloadVisualize
BU of 3w4k by Molmil
Crystal Structure of human DAAO in complex with coumpound 13
分子名称: 3-hydroxy-6-(2-phenylethyl)pyridazin-4(1H)-one, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M.
登録日2013-01-09
公開日2013-05-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors.
J.Med.Chem., 56, 2013
5AC0
DownloadVisualize
BU of 5ac0 by Molmil
ovis aries Aldehyde Dehydrogenase 1A1 in complex with a duocarmycin analog
分子名称: 1-[(1S)-1-methyl-5-oxidanyl-1,2-dihydrobenzo[e]indol-3-yl]hexan-1-one, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Koch, M.F, Harteis, S, Blank, I.D, Pestel, G, Tietze, L.F, Ochsenfeld, C, Schneider, S, Sieber, S.A.
登録日2015-08-10
公開日2015-08-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural, Biochemical, and Computational Studies Reveal the Mechanism of Selective Aldehyde Dehydrogenase 1A1 Inhibition by Cytotoxic Duocarmycin Analogues.
Angew.Chem.Int.Ed.Engl., 54, 2015
5AFD
DownloadVisualize
BU of 5afd by Molmil
Native structure of N-acetylneuramininate lyase (sialic acid aldolase) from Aliivibrio salmonicida
分子名称: 1,2-ETHANEDIOL, GLYCEROL, N-ACETYLNEURAMINATE LYASE
著者Gurung, M.K, Altermark, B, Rader, I.L.U, Helland, R, Smalas, A.O.
登録日2015-01-21
公開日2016-03-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Features and structure of a cold active N-acetylneuraminate lyase.
Plos One, 14, 2019
4BR1
DownloadVisualize
BU of 4br1 by Molmil
Protease-induced heterodimer of human triosephosphate isomerase.
分子名称: TRIOSEPHOSPHATE ISOMERASE
著者DeLaMora-DeLaMora, I, Torres-Larios, A, Hernandez-Alcantara, G, Mendoza-Hernandez, G, Enriquez-Flores, S, Mendez, S.T, Castillo-Villanueva, A, Garcia-Torres, I, Torres-Arroyo, A, Gomez-Manzo, S, Marcial-Quino, J, Oria-Hernandez, J, Lopez-Velazquez, G, Reyes-Vivas, H.
登録日2013-06-03
公開日2013-06-12
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Differential Proteolysis in Human Triosephosphate Isomerase
To be Published
5AGY
DownloadVisualize
BU of 5agy by Molmil
CRYSTAL STRUCTURE OF A TAU CLASS GST MUTANT FROM GLYCINE
分子名称: 4-NITROPHENYL METHANETHIOL, GLUTATHIONE S-TRANSFERASE, PHOSPHATE ION, ...
著者Axarli, I, Muleta, A.W, Vlachakis, D, Kossida, S, Kotzia, G, Dhavala, P, Papageorgiou, A.C, Labrou, N.E.
登録日2015-02-04
公開日2015-12-16
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Directed Evolution of Tau Class Glutathione Transferases Reveals a Site that Regulates Catalytic Efficiency and Masks Cooperativity.
Biochem.J., 473, 2016
2WCW
DownloadVisualize
BU of 2wcw by Molmil
1.6A resolution structure of Archaeoglobus fulgidus Hjc, a Holliday junction resolvase from an archaeal hyperthermophile
分子名称: ACETATE ION, AMMONIUM ION, HJC
著者Carolis, C, Koehler, C, Sauter, C, Basquin, J, Suck, D, Toeroe, I.
登録日2009-03-17
公開日2009-03-24
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献1.6 A Resolution Structure of Archaeoglobus Fulgidus Hjc, a Holliday Junction Resolvase from an Archaeal Hyperthermophile
To be Published
1FHQ
DownloadVisualize
BU of 1fhq by Molmil
REFINED SOLUTION STRUCTURE OF THE FHA2 DOMAIN OF RAD53
分子名称: PROTEIN KINASE SPK1
著者Byeon, I.-J.L, Liao, H, Tsai, M.-D.
登録日2000-08-02
公開日2000-10-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献II. Structure and specificity of the interaction between the FHA2 domain of Rad53 and phosphotyrosyl peptides.
J.Mol.Biol., 302, 2000
5AC1
DownloadVisualize
BU of 5ac1 by Molmil
Sheep aldehyde dehydrogenase 1A1 with duocarmycin analog inhibitor
分子名称: 1-[(1S)-1-methyl-5-oxidanyl-1,2-dihydrobenzo[e]indol-3-yl]hexan-1-one, MAGNESIUM ION, RETINAL DEHYDROGENASE 1, ...
著者Koch, M.F, Harteis, S, Blank, I.D, Pestel, G, Tietze, L.F, Ochsenfeld, C, Schneider, S, Sieber, S.A.
登録日2015-08-11
公開日2015-08-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural, Biochemical, and Computational Studies Reveal the Mechanism of Selective Aldehyde Dehydrogenase 1A1 Inhibition by Cytotoxic Duocarmycin Analogues.
Angew.Chem.Int.Ed.Engl., 54, 2015
6SE5
DownloadVisualize
BU of 6se5 by Molmil
Y830A mutant from Mycoplasma genitalium P110 adhesin
分子名称: Mgp-operon protein 3, POTASSIUM ION
著者Fita, I, Aparicio, D.
登録日2019-07-29
公開日2020-08-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Mycoplasma genitalium complex
To Be Published
6SJV
DownloadVisualize
BU of 6sjv by Molmil
Structure of HPV18 E6 oncoprotein in complex with mutant E6AP LxxLL motif
分子名称: Maltodextrin-binding protein,Protein E6,Ubiquitin-protein ligase E3A, ZINC ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Suarez, I.P, Cousido-Siah, A, Bonhoure, A, Kostmann, C, Mitschler, A, Podjarny, A, Trave, G.
登録日2019-08-14
公開日2019-09-04
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.029 Å)
主引用文献Cellular target recognition by HPV18 and HPV49 oncoproteins
To be published
1C2T
DownloadVisualize
BU of 1c2t by Molmil
NEW INSIGHTS INTO INHIBITOR DESIGN FROM THE CRYSTAL STRUCTURE AND NMR STUDIES OF E. COLI GAR TRANSFORMYLASE IN COMPLEX WITH BETA-GAR AND 10-FORMYL-5,8,10-TRIDEAZAFOLIC ACID.
分子名称: 10-FORMYL-5,8,10-TRIDEAZAFOLIC ACID, GLYCINAMIDE RIBONUCLEOTIDE, GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE
著者Greasley, S.E, Yamashita, M.M, Cai, H, Benkovic, S.J, Boger, D.L, Wilson, I.A.
登録日1999-07-26
公開日2000-01-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献New insights into inhibitor design from the crystal structure and NMR studies of Escherichia coli GAR transformylase in complex with beta-GAR and 10-formyl-5,8,10-trideazafolic acid.
Biochemistry, 38, 1999
7Z51
DownloadVisualize
BU of 7z51 by Molmil
Tick-borne encephalitis virus Kuutsalo-14
分子名称: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
著者Pulkkinen, L.I.A, Barrass, S.V, Anastasina, M, Butcher, S.J.
登録日2022-03-07
公開日2022-04-20
最終更新日2022-05-04
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Molecular Organisation of Tick-Borne Encephalitis Virus.
Viruses, 14, 2022
5A7S
DownloadVisualize
BU of 5a7s by Molmil
Crystal structure of human JMJD2A in complex with compound 44
分子名称: 1,2-ETHANEDIOL, 2-(5-acetamido-2-oxidanyl-phenyl)pyridine-4-carboxylic acid, DIMETHYL SULFOXIDE, ...
著者Nowak, R, Velupillai, S, Krojer, T, Gileadi, C, Johansson, C, Korczynska, M, Le, D.D, Younger, N, Gregori-Puigjane, E, Tumber, A, Iwasa, E, Pollock, S.B, Ortiz Torres, I, Kopec, J, Tallant, C, Froese, S, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Shoichet, B.K, Fujimori, D.G, Oppermann, U.
登録日2015-07-09
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Docking and Linking of Fragments to Discover Jumonji Histone Demethylase Inhibitors.
J.Med.Chem., 59, 2016

223532

件を2024-08-07に公開中

PDB statisticsPDBj update infoContact PDBjnumon