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PDB: 17892 results

6MEK
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Crystal structure of Hepatitis C virus envelope glycoprotein E2 core in complex with human antibodies HEPC3 and HEPC46
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, E2 GLYCOPROTEIN, ...
Authors:Flyak, A.I, Bjorkman, P.J.
Deposit date:2018-09-06
Release date:2018-11-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:HCV Broadly Neutralizing Antibodies Use a CDRH3 Disulfide Motif to Recognize an E2 Glycoprotein Site that Can Be Targeted for Vaccine Design.
Cell Host Microbe, 24, 2018
7KVK
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Human CYP3A4 bound to an inhibitor
Descriptor: 1,2-ETHANEDIOL, Cytochrome P450 3A4, GLYCEROL, ...
Authors:Sevrioukova, I.
Deposit date:2020-11-28
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Rational Design of CYP3A4 Inhibitors: A One-Atom Linker Elongation in Ritonavir-Like Compounds Leads to a Marked Improvement in the Binding Strength.
Int J Mol Sci, 22, 2021
7Q4V
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Electron bifurcating hydrogenase - HydABC from A. woodii
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Katsyv, A, Kumar, A, Saura, P, Poeverlein, M.C, Freibert, S.A, Stripp, S, Jain, S, Gamiz-Hernandez, A.P, Kaila, V.R.I, Mueller, V, Schuller, J.M.
Deposit date:2021-11-02
Release date:2023-02-22
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Molecular Basis of the Electron Bifurcation Mechanism in the [FeFe]-Hydrogenase Complex HydABC.
J.Am.Chem.Soc., 145, 2023
6MDM
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The 20S supercomplex engaging the SNAP-25 N-terminus (class 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Alpha-soluble NSF attachment protein, ...
Authors:White, K.I, Zhao, M, Brunger, A.T.
Deposit date:2018-09-04
Release date:2018-09-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural principles of SNARE complex recognition by the AAA+ protein NSF.
Elife, 7, 2018
7Q4W
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BU of 7q4w by Molmil
CryoEM structure of electron bifurcating Fe-Fe hydrogenase HydABC complex A. woodii in the oxidised state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Kumar, A, Saura, P, Poeverlein, M.C, Gamiz-Hernandez, A.P, Kaila, V.R.I, Mueller, V, Schuller, J.M.
Deposit date:2021-11-02
Release date:2023-02-15
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Molecular Basis of the Electron Bifurcation Mechanism in the [FeFe]-Hydrogenase Complex HydABC.
J.Am.Chem.Soc., 145, 2023
6SXP
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STRUCTURE OF ESTER-HYDROLASE EH3 FROM THE METAGENOME OF MARINE SEDIMENTS AT MILAZZO HARBOR (SICILY, ITALY)
Descriptor: DI(HYDROXYETHYL)ETHER, Esterase, GLYCEROL
Authors:Cea-Rama, I, Sanz-Aparicio, J.
Deposit date:2019-09-26
Release date:2021-01-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Tuning the Properties of Natural Promiscuous Enzymes by Engineering Their Nano-environment.
Acs Nano, 14, 2020
2FTK
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BU of 2ftk by Molmil
berylloflouride Spo0F complex with Spo0B
Descriptor: MAGNESIUM ION, Sporulation initiation phosphotransferase B, Sporulation initiation phosphotransferase F
Authors:Varughese, K.I.
Deposit date:2006-01-24
Release date:2006-07-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:The Crystal Structure of Beryllofluoride Spo0F in Complex with the Phosphotransferase Spo0B Represents a Phosphotransfer Pretransition State.
J.Bacteriol., 188, 2006
1SB6
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BU of 1sb6 by Molmil
Solution structure of a cyanobacterial copper metallochaperone, ScAtx1
Descriptor: copper chaperone ScAtx1
Authors:Banci, L, Bertini, I, Ciofi-Baffoni, S, Su, X.C, Borrelly, G.P, Robinson, N.J, Structural Proteomics in Europe (SPINE)
Deposit date:2004-02-10
Release date:2004-04-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structures of a Cyanobacterial Metallochaperone: INSIGHT INTO AN ATYPICAL COPPER-BINDING MOTIF.
J.Biol.Chem., 279, 2004
6VPR
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BU of 6vpr by Molmil
Crystal structure of the C-terminal domain of DENR
Descriptor: ACETATE ION, Density-regulated protein, L(+)-TARTARIC ACID, ...
Authors:Lomakin, I.B, Steitz, T.A.
Deposit date:2020-02-04
Release date:2020-04-08
Last modified:2020-04-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the C-terminal domain of DENR.
Comput Struct Biotechnol J, 18, 2020
1I7W
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BU of 1i7w by Molmil
BETA-CATENIN/PHOSPHORYLATED E-CADHERIN COMPLEX
Descriptor: BETA-CATENIN, CHLORIDE ION, EPITHELIAL-CADHERIN, ...
Authors:Huber, A.H, Weis, W.I.
Deposit date:2001-03-10
Release date:2001-05-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of the beta-catenin/E-cadherin complex and the molecular basis of diverse ligand recognition by beta-catenin.
Cell(Cambridge,Mass.), 105, 2001
7PCJ
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BU of 7pcj by Molmil
X-ray structure of CypA-C52AK125C/CsA/aromatic foldamer complex
Descriptor: Aromatic foldamer, Cyclosporin A, Peptidyl-prolyl cis-trans isomerase A
Authors:Vallade, M, Langlois d'Estaintot, B, Fischer, L, Buratto, J, Savko, M, Huc, I.
Deposit date:2021-08-03
Release date:2022-07-13
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:X-ray structure of a cystein mutant of Cyclophilin A tethered to an aromatic oligoamide foldamer complexed with Cyclosporin A
To Be Published
1I4K
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CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.5A RESOLUTION
Descriptor: CITRIC ACID, PUTATIVE SNRNP SM-LIKE PROTEIN
Authors:Toro, I, Thore, S, Mayer, C, Basquin, J, Seraphin, B, Suck, D.
Deposit date:2001-02-22
Release date:2001-08-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex.
EMBO J., 20, 2001
6VY1
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BU of 6vy1 by Molmil
Cryo-EM structure of filamentous PFD from Methanocaldococcus jannaschii
Descriptor: Prefoldin subunit alpha 2
Authors:Wang, F, Chen, Y.X, Ing, N.L, Hochbaum, A.I, Clark, D.S, Glover, D.J, Egelman, E.H.
Deposit date:2020-02-25
Release date:2020-05-13
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Structural Determination of a Filamentous Chaperone to Fabricate Electronically Conductive Metalloprotein Nanowires.
Acs Nano, 14, 2020
6VOE
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HIV-1 wild type protease with GRL-019-17A, a tricyclic cyclohexane fused tetrahydrofuranofuran (CHf-THF) derivative as the P2 ligand and a aminobenzothiazole(Abt)-based P2'-ligand
Descriptor: (1S,3aR,5S,6R,7aS)-octahydro-1,6-epoxy-2-benzofuran-5-yl {(2S,3R)-3-hydroxy-4-[(2-methylpropyl)({2-[(propan-2-yl)amino]-1,3-benzoxazol-6-yl}sulfonyl)amino]-1-phenylbutan-2-yl}carbamate, ACETATE ION, CHLORIDE ION, ...
Authors:Wang, Y.-F, Agniswamy, J, Weber, I.T.
Deposit date:2020-01-30
Release date:2020-05-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure-Based Design of Highly Potent HIV-1 Protease Inhibitors Containing New Tricyclic Ring P2-Ligands: Design, Synthesis, Biological, and X-ray Structural Studies.
J.Med.Chem., 63, 2020
2JCP
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BU of 2jcp by Molmil
The hyaluronan binding domain of murine CD44
Descriptor: CD44 ANTIGEN
Authors:Banerji, S, Wright, A.J, Noble, M.E.M, Mahoney, D.J, Campbell, I.D, Day, A.J, Jackson, D.G.
Deposit date:2007-01-03
Release date:2007-01-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of the Cd44-Hyaluronan Complex Provide Insight Into a Fundamental Carbohydrate-Protein Interaction.
Nat.Struct.Mol.Biol., 14, 2008
2JIR
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BU of 2jir by Molmil
A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CYANIDE ION, IRON/SULFUR CLUSTER, ...
Authors:Najmudin, S, Gonzalez, P.J, Trincao, J, Coelho, C, Mukhopadhyay, A, Romao, C.C, Moura, I, Moura, J.J.G, Brondino, C.D, Romao, M.J.
Deposit date:2007-06-28
Release date:2008-03-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Periplasmic Nitrate Reductase Revisited: A Sulfur Atom Completes the Sixth Coordination of the Catalytic Molybdenum.
J.Biol.Inorg.Chem., 13, 2008
2ATB
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BU of 2atb by Molmil
Triple mutant 8D9D10V of scorpion toxin LQH-alpha-IT
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, NITRATE ION, ...
Authors:Kahn, R, Karbat, I, Gurevitz, M, Frolow, F.
Deposit date:2005-08-24
Release date:2006-09-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structures of Lqh-alpha-IT and Lqh-alpha-IT8D9D10V mutant
To be Published
7QNQ
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BU of 7qnq by Molmil
Structure of the Aux2 relaxosome protein of plasmid pLS20
Descriptor: Auxiliary relaxosome protein, CHLORIDE ION, MAGNESIUM ION
Authors:Boer, D.R, Crespo, I.
Deposit date:2021-12-22
Release date:2022-03-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural and biochemical characterization of the relaxosome auxiliary proteins encoded on the Bacillus subtilis plasmid pLS20.
Comput Struct Biotechnol J, 20, 2022
8TXM
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BU of 8txm by Molmil
Crystal structure of 05.GC.w13.02 Fab in complex with H1 HA from A/California/04/2009(H1N1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GC_w13_B, ...
Authors:Lin, T.H, Moore, N, Wilson, I.A.
Deposit date:2023-08-23
Release date:2024-06-26
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Maturation of germinal center B cells after influenza virus vaccination in humans.
J.Exp.Med., 221, 2024
1SAC
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BU of 1sac by Molmil
THE STRUCTURE OF PENTAMERIC HUMAN SERUM AMYLOID P COMPONENT
Descriptor: ACETIC ACID, CALCIUM ION, SERUM AMYLOID P COMPONENT
Authors:White, H.E, Emsley, J, O'Hara, B.P, Oliva, G, Srinivasan, N, Tickle, I.J, Blundell, T.L, Pepys, M.B, Wood, S.P.
Deposit date:1994-01-27
Release date:1994-05-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of pentameric human serum amyloid P component.
Nature, 367, 1994
7SEA
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BU of 7sea by Molmil
Crystal structure of human Fibrillarin in complex with compound 2 from cocktail soak
Descriptor: 6-(trifluoromethyl)pyrimidin-4-amine, DIMETHYL SULFOXIDE, FORMIC ACID, ...
Authors:Shi, Y, El-Deeb, I.M, Masic, V, Hartley-Tassell, L, Maggioni, A, von Itzstein, M, Ve, T.
Deposit date:2021-09-30
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Discovery of Cofactor Competitive Inhibitors against the Human Methyltransferase Fibrillarin.
Pharmaceuticals, 15, 2021
7SEC
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Crystal structure of human Fibrillarin in complex with compound 1a
Descriptor: 2-[(8S)-4-oxo-2-(trifluoromethyl)-4,5-dihydropyrazolo[1,5-a]pyrazin-6-yl]acetamide, DIMETHYL SULFOXIDE, FORMIC ACID, ...
Authors:Shi, Y, El-Deeb, I.M, Masic, V, Hartley-Tassell, L, Maggioni, A, von Itzstein, M, Ve, T.
Deposit date:2021-09-30
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of Cofactor Competitive Inhibitors against the Human Methyltransferase Fibrillarin.
Pharmaceuticals, 15, 2021
2AMX
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BU of 2amx by Molmil
Crystal structure of Plasmodium Yoelii Adenosine deaminase (PY02076)
Descriptor: COBALT (II) ION, UNKNOWN ATOM OR ION, adenosine deaminase
Authors:Dong, A, Vedadi, M, Wasney, G, Zhao, Y, Lew, J, Alam, Z, Melone, M, Koeieradzki, I, Edwards, A.M, Arrowsmith, C.H, Weigelt, J, Sundstrom, M, Bochkarev, A, Hui, R, Amani, M, Structural Genomics Consortium (SGC)
Deposit date:2005-08-10
Release date:2005-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.
Mol.Biochem.Parasitol., 151, 2007
6VIP
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BU of 6vip by Molmil
TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-6008
Descriptor: TP53-binding protein 1, UNKNOWN ATOM OR ION, {4-[(3,5-dimethyl-1H-pyrazol-1-yl)methyl]phenyl}(4-ethylpiperazin-1-yl)methanone
Authors:The, J, Hong, Z, Dong, A, Headey, S, Gunzburg, M, Doak, B, James, L.I, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Structural Genomics Consortium (SGC)
Deposit date:2020-01-13
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-6008
to be published
5UK6
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Structure of Anabaena Sensory Rhodopsin Determined by Solid State NMR Spectroscopy and DEER
Descriptor: Bacteriorhodopsin
Authors:Milikisiyants, S, Wang, S, Munro, R.A, Donohue, M, Ward, M.E, Brown, L.S, Smirnova, T.I, Ladizhansky, V, Smirnov, A.I.
Deposit date:2017-01-20
Release date:2017-05-31
Last modified:2020-01-08
Method:SOLID-STATE NMR
Cite:Oligomeric Structure of Anabaena Sensory Rhodopsin in a Lipid Bilayer Environment by Combining Solid-State NMR and Long-range DEER Constraints.
J. Mol. Biol., 429, 2017

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