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PDB: 358 results

8H4R
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BU of 8h4r by Molmil
The Crystal Structure of CDK3 and CyclinE1 Complex with Dinaciclib from Biortus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium, G1/S-specific cyclin-E1, ...
Authors:Gui, W, Wang, F, Cheng, W, Gao, J, Huang, Y, Ouyang, Z.
Deposit date:2022-10-11
Release date:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Crystal Structure of CDK3 and CyclinE1 Complex with Dinaciclib from Biortus
To Be Published
8IA5
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BU of 8ia5 by Molmil
Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one, 9-mer peptide, ...
Authors:Cheng, X.Y, Wei, Q.Y, Huang, Y, Su, Z.D.
Deposit date:2023-02-07
Release date:2023-02-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX
To Be Published
7CXN
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BU of 7cxn by Molmil
Architecture of a SARS-CoV-2 mini replication and transcription complex
Descriptor: Helicase, Non-structural protein 7, Non-structural protein 8, ...
Authors:Yan, L, Zhang, Y, Ge, J, Zheng, L, Gao, Y, Wang, T, Jia, Z, Wang, H, Huang, Y, Li, M, Wang, Q, Rao, Z, Lou, Z.
Deposit date:2020-09-02
Release date:2020-11-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Architecture of a SARS-CoV-2 mini replication and transcription complex.
Nat Commun, 11, 2020
7CXM
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BU of 7cxm by Molmil
Architecture of a SARS-CoV-2 mini replication and transcription complex
Descriptor: Helicase, Non-structural protein 7, Non-structural protein 8, ...
Authors:Yan, L, Zhang, Y, Ge, J, Zheng, L, Gao, Y, Wang, T, Jia, Z, Wang, H, Huang, Y, Li, M, Wang, Q, Rao, Z, Lou, Z.
Deposit date:2020-09-02
Release date:2020-11-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Architecture of a SARS-CoV-2 mini replication and transcription complex.
Nat Commun, 11, 2020
6KCU
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BU of 6kcu by Molmil
Shuguo PWWP domain
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, LD23804p
Authors:Liu, Y.C, Huang, Y.
Deposit date:2019-06-29
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Shuguo PWWP domain
To Be Published
6KCO
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Shuguo PWWP in complex with ssDNA
Descriptor: DNA (5'-D(*TP*CP*CP*CP*T)-3'), LD23804p
Authors:Liu, Y.C, Huang, Y.
Deposit date:2019-06-28
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Shuguo PWWP in complex with ssDNA
To Be Published
5XYW
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BU of 5xyw by Molmil
Crystal structure of drosophila simulans Rhino chromoshadow domain in complex with N-terminal domain
Descriptor: GD21652, Rhino
Authors:Yu, B.W, Huang, Y.
Deposit date:2017-07-10
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification
EMBO Rep., 19, 2018
5XYV
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BU of 5xyv by Molmil
Crystal structure of drosophila melanogaster Rhino chromoshadow domain in complex with Deadlock N-terminal domain
Descriptor: Protein deadlock, RHINO
Authors:Yu, B.W, Huang, Y.
Deposit date:2017-07-10
Release date:2018-06-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification
EMBO Rep., 19, 2018
5Z9X
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BU of 5z9x by Molmil
Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate
Descriptor: MAGNESIUM ION, RNA (5'-R(P*GP*CP*CP*CP*AP*UP*UP*AP*G)-3'), SULFATE ION, ...
Authors:Chen, J, Liu, L, You, C, Gu, J, Ruan, W, Zhang, L, Gan, J, Cao, C, Huang, Y, Chen, X, Ma, J.
Deposit date:2018-02-05
Release date:2018-06-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1.
Nat Commun, 9, 2018
5Z9Z
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BU of 5z9z by Molmil
The C-terminal RRM domain of Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 (E329A/E330A/E332A)
Descriptor: CITRATE ANION, Small RNA degrading nuclease 1
Authors:Chen, J, Liu, L, You, C, Gu, J, Ruan, W, Zhang, L, Cao, C, Gan, J, Huang, Y, Chen, X, Ma, J.
Deposit date:2018-02-05
Release date:2018-06-27
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1.
Nat Commun, 9, 2018
5X5Y
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BU of 5x5y by Molmil
A membrane protein complex
Descriptor: Probable ATP-binding component of ABC transporter, Uncharacterized protein
Authors:Luo, Q, Yang, X, Huang, Y.
Deposit date:2017-02-18
Release date:2017-04-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.465 Å)
Cite:Structural basis for lipopolysaccharide extraction by ABC transporter LptB2FG
Nat. Struct. Mol. Biol., 24, 2017
5WY0
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BU of 5wy0 by Molmil
Crystal structure of the methyltranferase domain of human HEN1 in complex with AdoMet
Descriptor: S-ADENOSYLMETHIONINE, Small RNA 2'-O-methyltransferase
Authors:Peng, L, Ma, J.B, Wu, L.G, Huang, Y.
Deposit date:2017-01-10
Release date:2018-01-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Identification of substrates of the small RNA methyltransferase Hen1 in mouse spermatogonial stem cells and analysis of its methyl-transfer domain
J. Biol. Chem., 293, 2018
5ZUM
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BU of 5zum by Molmil
Structure of dipeptidyl-peptidase III from Corallococcus sp. strain EGB
Descriptor: ZINC ION, dipeptidyl-peptidase III
Authors:Zhang, H, Duan, Y.J, Li, Z.K, Liu, W.D, Huang, Y, Cui, Z.L.
Deposit date:2018-05-08
Release date:2019-06-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of dipeptidyl peptidase III from Corallococcus sp. strain EGB
To Be Published
6A6O
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BU of 6a6o by Molmil
Crystal structure of acetyl ester-xyloside bifunctional hydrolase from Caldicellulosiruptor lactoaceticus
Descriptor: Esterase/lipase-like protein
Authors:Cao, H, Huang, Y, Sun, L.C, Liu, X, Liu, T.F, Wang, F.Z, Xin, F.J.
Deposit date:2018-06-28
Release date:2019-06-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Insights into the Dual-Substrate Recognition and Catalytic Mechanisms of a Bifunctional Acetyl Ester-Xyloside Hydrolase from Caldicellulosiruptor lactoaceticus.
Acs Catalysis, 9, 2019
7F3L
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BU of 7f3l by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
Descriptor: RNA (5'-R(P*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
To Be Published
7F3J
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BU of 7f3j by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
To Be Published
7F9Y
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BU of 7f9y by Molmil
ghrelin-bound ghrelin receptor in complex with Gq
Descriptor: CHOLESTEROL, Engineered G-alpha-q subunit, Ghrelin-28, ...
Authors:Wang, Y, Zhuang, Y, Xu, P, Xu, H.E, Jiang, Y.
Deposit date:2021-07-05
Release date:2021-08-18
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular recognition of an acyl-peptide hormone and activation of ghrelin receptor.
Nat Commun, 12, 2021
7F9Z
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BU of 7f9z by Molmil
GHRP-6-bound ghrelin receptor in complex with Gq
Descriptor: 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE, Engineered G-alpha-q, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Wang, Y, Zhuang, Y, Xu, P, Xu, H.E, Jiang, Y.
Deposit date:2021-07-05
Release date:2021-08-18
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Molecular recognition of an acyl-peptide hormone and activation of ghrelin receptor.
Nat Commun, 12, 2021
7F3I
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BU of 7f3i by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
Descriptor: RNA (5'-R(*GP*UP*(5MC)P*CP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
To Be Published
7F3K
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BU of 7f3k by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC)P*U)-3'), SULFATE ION, Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
To Be Published
7TJ0
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BU of 7tj0 by Molmil
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor SL-4-241
Descriptor: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5, ACETATE ION
Authors:Forouhar, F, Liu, H, Iketani, S, Zack, A, Khanizeman, N, Bednarova, E, Fowler, B, Hong, S.J, Mohri, H, Nair, M.S, Huang, Y, Tay, N.E.S, Lee, S, Karan, C, Resnick, S.J, Quinn, C, Li, W, Shion, H, Jurtschenko, C, Lauber, M.A, McDonald, T, Stokes, M, Hurst, B, Rovis, T, Chavez, A, Ho, D.D, Stockwell, B.R.
Deposit date:2022-01-14
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Development of optimized drug-like small molecule inhibitors of the SARS-CoV-2 3CL protease for treatment of COVID-19.
Nat Commun, 13, 2022
7CH7
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BU of 7ch7 by Molmil
Cryo-EM structure of E.coli MlaFEB
Descriptor: Lipid asymmetry maintenance ABC transporter permease subunit MlaE, Lipid asymmetry maintenance protein MlaB, Phospholipid ABC transporter ATP-binding protein MlaF
Authors:Zhou, C, Shi, H, Huang, Y.
Deposit date:2020-07-05
Release date:2021-05-19
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural Insight into Phospholipid Transport by the MlaFEBD Complex from P. aeruginosa.
J.Mol.Biol., 433, 2021
7CHA
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BU of 7cha by Molmil
Cryo-EM structure of P.aeruginosa MlaFEBD with AMPPNP
Descriptor: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, MlaD domain-containing protein, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Zhou, C, Shi, H, Zhang, M, Huang, Y.
Deposit date:2020-07-05
Release date:2021-05-19
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural Insight into Phospholipid Transport by the MlaFEBD Complex from P. aeruginosa.
J.Mol.Biol., 433, 2021
7CH6
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BU of 7ch6 by Molmil
Cryo-EM structure of E.coli MlaFEB with AMPPNP
Descriptor: Lipid asymmetry maintenance ABC transporter permease subunit MlaE, Lipid asymmetry maintenance protein MlaB, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Zhou, C, Shi, H, Zhang, M, Huang, Y.
Deposit date:2020-07-05
Release date:2021-08-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural Insight into Phospholipid Transport by the MlaFEBD Complex from P. aeruginosa.
J.Mol.Biol., 433, 2021
7CH8
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Cryo-EM structure of P.aeruginosa MlaFEBD with ADP-V
Descriptor: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, ADP METAVANADATE, MAGNESIUM ION, ...
Authors:Zhou, C, Shi, H, Zhang, M, Huang, Y.
Deposit date:2020-07-05
Release date:2021-10-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural Insight into Phospholipid Transport by the MlaFEBD Complex from P. aeruginosa.
J.Mol.Biol., 433, 2021

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PDB entries from 2024-10-09

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