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PDB: 49 results

6LBH
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BU of 6lbh by Molmil
Cryo-EM structure of the MgtE Mg2+ channel under Mg2+-free conditions
Descriptor: Fab heavy chain, Fab light chain, Magnesium transporter MgtE
Authors:Hattori, M, Jin, F.
Deposit date:2019-11-14
Release date:2021-04-14
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The structure of MgtE in the absence of magnesium provides new insights into channel gating.
Plos Biol., 19, 2021
8JV5
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BU of 8jv5 by Molmil
Cryo-EM structure of the zebrafish P2X4 receptor in complex with BX430
Descriptor: 1-[2,6-bis(bromanyl)-4-propan-2-yl-phenyl]-3-pyridin-3-yl-urea, 2-acetamido-2-deoxy-beta-D-glucopyranose, P2X purinoceptor
Authors:Hattori, M, Shen, C.
Deposit date:2023-06-27
Release date:2023-10-18
Last modified:2023-10-25
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Structural insights into the allosteric inhibition of P2X4 receptors.
Nat Commun, 14, 2023
8JV6
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BU of 8jv6 by Molmil
Cryo-EM structure of the zebrafish P2X4 receptor in complex with BAY-1797
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N-[4-(3-chloranylphenoxy)-3-sulfamoyl-phenyl]-2-phenyl-ethanamide, P2X purinoceptor
Authors:Hattori, M, Shen, C.
Deposit date:2023-06-27
Release date:2023-10-18
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Structural insights into the allosteric inhibition of P2X4 receptors.
Nat Commun, 14, 2023
4DW0
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BU of 4dw0 by Molmil
Crystal structure of the ATP-gated P2X4 ion channel in the closed, apo state at 2.9 Angstroms
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GADOLINIUM ATOM, GLYCEROL, ...
Authors:Hattori, M, Gouaux, E.
Deposit date:2012-02-24
Release date:2012-04-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular mechanism of ATP binding and ion channel activation in P2X receptors.
Nature, 485, 2012
4DW1
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BU of 4dw1 by Molmil
Crystal structure of the ATP-gated P2X4 ion channel in the ATP-bound, open state at 2.8 Angstroms
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:Hattori, M, Gouaux, E.
Deposit date:2012-02-24
Release date:2012-04-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular mechanism of ATP binding and ion channel activation in P2X receptors.
Nature, 485, 2012
6AH5
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BU of 6ah5 by Molmil
Structure of human P2X3 receptor in complex with ATP and Mg2+ ion
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Hattori, M.
Deposit date:2018-08-16
Release date:2019-06-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.819 Å)
Cite:Molecular mechanisms of human P2X3 receptor channel activation and modulation by divalent cation bound ATP.
Elife, 8, 2019
6AH4
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BU of 6ah4 by Molmil
Structure of human P2X3 receptor in complex with ATP and Ca2+ ion
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Hattori, M.
Deposit date:2018-08-16
Release date:2019-06-12
Last modified:2020-12-23
Method:X-RAY DIFFRACTION (3.296 Å)
Cite:Molecular mechanisms of human P2X3 receptor channel activation and modulation by divalent cation bound ATP.
Elife, 8, 2019
3A1U
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BU of 3a1u by Molmil
Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GMPPNP form
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Iron(II) transport protein B, MAGNESIUM ION, ...
Authors:Hattori, M, Ishitani, R, Nureki, O.
Deposit date:2009-04-22
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
3A1S
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BU of 3a1s by Molmil
Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GDP form I
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Hattori, M, Ishitani, R, Nureki, O.
Deposit date:2009-04-22
Release date:2009-09-22
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
3A1W
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BU of 3a1w by Molmil
Crystal structue of the G domain of T. maritima FeoB iron iransporter
Descriptor: Iron(II) transport protein B, SULFATE ION
Authors:Hattori, M, Ishitani, R, Nureki, O.
Deposit date:2009-04-22
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9001 Å)
Cite:Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
3A1T
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BU of 3a1t by Molmil
Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GDP form II
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Iron(II) transport protein B
Authors:Hattori, M, Ishitani, R, Nureki, O.
Deposit date:2009-04-22
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
2YVX
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BU of 2yvx by Molmil
Crystal structure of magnesium transporter MgtE
Descriptor: MAGNESIUM ION, Mg2+ transporter MgtE
Authors:Hattori, M, Tanaka, Y, Fukai, S, Ishitani, R, Nureki, O.
Deposit date:2007-04-18
Release date:2007-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the MgtE Mg(2+) transporter
Nature, 448, 2007
3A1V
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BU of 3a1v by Molmil
Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in apo form
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Hattori, M, Ishitani, R, Nureki, O.
Deposit date:2009-04-22
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
2YVZ
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BU of 2yvz by Molmil
Crystal structure of magnesium transporter MgtE cytosolic domain, Mg2+-free form
Descriptor: Mg2+ transporter MgtE
Authors:Hattori, M, Tanaka, Y, Fukai, S, Ishitani, R, Nureki, O.
Deposit date:2007-04-18
Release date:2007-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Crystal structure of the MgtE Mg(2+) transporter
Nature, 448, 2007
2YVY
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BU of 2yvy by Molmil
Crystal structure of magnesium transporter MgtE cytosolic domain, Mg2+ bound form
Descriptor: MAGNESIUM ION, Mg2+ transporter MgtE
Authors:Hattori, M, Tanaka, Y, Fukai, S, Ishitani, R, Nureki, O.
Deposit date:2007-04-18
Release date:2007-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the MgtE Mg(2+) transporter
Nature, 448, 2007
8JV7
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BU of 8jv7 by Molmil
Cryo-EM structure of the panda P2X7 receptor in complex with PPADS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[(E)-[4-methanoyl-6-methyl-5-oxidanyl-3-(phosphonooxymethyl)pyridin-2-yl]diazenyl]benzene-1,3-disulfonic acid, P2X purinoceptor
Authors:Sheng, D, Hattori, M.
Deposit date:2023-06-27
Release date:2023-11-29
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insights into the orthosteric inhibition of P2X receptors by non-ATP analog antagonists.
Elife, 12, 2024
8JV8
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BU of 8jv8 by Molmil
Cryo-EM structure of the panda P2X7 receptor in complex with PPNDS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]-7-nitronaphthalene-1,5-disulfonic acid, P2X purinoceptor
Authors:Sheng, D, Hattori, M.
Deposit date:2023-06-27
Release date:2023-11-29
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Structural insights into the orthosteric inhibition of P2X receptors by non-ATP analog antagonists.
Elife, 12, 2024
8YL8
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BU of 8yl8 by Molmil
Crystal structure of the de novo designed protein 200 AA in the crystal form 2
Descriptor: De novo protein, SULFATE ION
Authors:Zhao, Z, Hattori, M.
Deposit date:2024-03-05
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Efficient and scalable protein design using a relaxed sequence space.
Science, 2024
8YL4
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BU of 8yl4 by Molmil
Crystal structure of the de novo designed protein 200 AA in the crystal form 1
Descriptor: De novo protein, GLYCEROL
Authors:Zhao, Z, Hattori, M.
Deposit date:2024-03-05
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Efficient and scalable protein design using a relaxed sequence space.
Science, 2024
6LR7
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BU of 6lr7 by Molmil
Crystal structure of GFPuv complexed with the nanobody LaG16 at 1.67 Angstron resolution
Descriptor: Green fluorescent protein, Nanobody LaG16
Authors:Zhang, Z.Y, Ding, Y, Hattori, M.
Deposit date:2020-01-15
Release date:2020-04-29
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structure-based engineering of anti-GFP nanobody tandems as ultra-high-affinity reagents for purification.
Sci Rep, 10, 2020
8GPV
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BU of 8gpv by Molmil
Cytoplasmic domain structure of the MgtE Mg2+ channel from Clostridiales bacterium
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, Magnesium transporter MgtE
Authors:Wang, M, Zhao, Y, Hattori, M.
Deposit date:2022-08-27
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Novel Mg 2+ binding sites in the cytoplasmic domain of the MgtE Mg 2+ channels revealed by X-ray crystal structures.
Acta Biochim.Biophys.Sin., 55, 2023
8GPS
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BU of 8gps by Molmil
Cytoplasmic domain structure of the MgtE Mg2+ channel from Chryseobacterium hispalense
Descriptor: MAGNESIUM ION, MgtE
Authors:Wang, M, Zhao, Y, Hattori, M.
Deposit date:2022-08-27
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Novel Mg 2+ binding sites in the cytoplasmic domain of the MgtE Mg 2+ channels revealed by X-ray crystal structures.
Acta Biochim.Biophys.Sin., 55, 2023
4WIB
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BU of 4wib by Molmil
Crystal structure of Magnesium transporter MgtE
Descriptor: CALCIUM ION, Magnesium transporter MgtE
Authors:Takeda, H, Hattori, M, Nishizawa, T, Yamashita, K, Shah, S.T.A, Caffrey, M, Maturana, A.D, Ishitani, R, Nureki, O.
Deposit date:2014-09-25
Release date:2014-12-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg(2+) channel MgtE
Nat Commun, 5, 2014
8H5E
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BU of 8h5e by Molmil
Crystal structure of the MgtE TM domain in complex with Ca2+ ions at 2.5 angstrom resolution
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CALCIUM ION, Magnesium transporter MgtE
Authors:Teng, X, Sheng, D, Hattori, M.
Deposit date:2022-10-13
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ion selectivity mechanism of the MgtE channel for Mg 2+ over Ca 2 .
Iscience, 25, 2022
8H70
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BU of 8h70 by Molmil
Crystal structure of the catalytic ATP-binding domain of the PhoR sensor histidine kinase from Vibrio cholera
Descriptor: DI(HYDROXYETHYL)ETHER, Phosphate regulon sensor protein PhoR
Authors:Jia, R, Zhao, W, Hattori, M.
Deposit date:2022-10-18
Release date:2023-02-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of the catalytic ATP-binding domain of the PhoR sensor histidine kinase.
Proteins, 91, 2023

 

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數據於2024-10-30公開中

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