Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2350 results

2ZUB
DownloadVisualize
BU of 2zub by Molmil
Left handed RadA
Descriptor: DNA repair and recombination protein radA
Authors:Chang, Y.W, Ko, T.P, Wang, T.F, Wang, A.H.J.
Deposit date:2008-10-15
Release date:2009-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Three new structures of left-handed RADA helical filaments: structural flexibility of N-terminal domain is critical for recombinase activity
Plos One, 4, 2009
5T0X
DownloadVisualize
BU of 5t0x by Molmil
Solution NMR-derived structure of calmodulin bound with ER alpha peptides
Descriptor: CALCIUM ION, Calmodulin, Estrogen receptor peptide
Authors:Zhang, Y, Ames, J.B.
Deposit date:2016-08-16
Release date:2017-02-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution NMR-derived structure of calmodulin bound with ER alpha peptides
To Be Published
1N6G
DownloadVisualize
BU of 1n6g by Molmil
The structure of immature Dengue-2 prM particles
Descriptor: major envelope protein E
Authors:Zhang, Y, Corver, J, Chipman, P.R, Zhang, W, Pletnev, S.V, Sedlak, D, Baker, T.S, Strauss, J.H, Kuhn, R.J, Rossmann, M.G.
Deposit date:2002-11-10
Release date:2003-06-03
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Structures of Immature flavivirus particles
EMBO J., 22, 2003
4EJV
DownloadVisualize
BU of 4ejv by Molmil
Staphylococcus epidermidis TcaR in complex with chloramphenicol
Descriptor: 2,2-dichloro-N-[(1S,2S)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]acetamide, Transcriptional regulator TcaR
Authors:Chang, Y.M, Chen, C.K.M, Wang, A.H.J.
Deposit date:2012-04-07
Release date:2013-05-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural analysis of the antibiotic recognition mechanism of MarR family proteins
Acta Crystallogr.,Sect.D, 2013
3OPW
DownloadVisualize
BU of 3opw by Molmil
Crystal Structure of the Rph1 catalytic core
Descriptor: DNA damage-responsive transcriptional repressor RPH1
Authors:Chang, Y, Wu, J, Tong, X, Zhou, J, Ding, J.
Deposit date:2010-09-02
Release date:2010-12-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the catalytic core of Saccharomyces cerevesiae histone demethylase Rph1: insights into the substrate specificity and catalytic mechanism
Biochem.J., 433, 2011
3OPT
DownloadVisualize
BU of 3opt by Molmil
Crystal structure of the Rph1 catalytic core with a-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, DNA damage-responsive transcriptional repressor RPH1, NICKEL (II) ION
Authors:Chang, Y, Wu, J, Tong, X, Zhou, J, Ding, J.
Deposit date:2010-09-02
Release date:2010-12-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the catalytic core of Saccharomyces cerevesiae histone demethylase Rph1: insights into the substrate specificity and catalytic mechanism
Biochem.J., 433, 2011
1NA4
DownloadVisualize
BU of 1na4 by Molmil
The structure of immature Yellow Fever virus particle
Descriptor: major envelope protein E
Authors:Zhang, Y, Corver, J, Chipman, P.R, Lenches, E, Zhang, W, Pletnev, S.V, Sedlak, D, Baker, T.S, Strauss, J.H, Kuhn, R.J, Rossmann, M.G.
Deposit date:2002-11-26
Release date:2003-12-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY
Cite:Structures of immature flavivirus particles
EMBO J., 22, 2003
8JI9
DownloadVisualize
BU of 8ji9 by Molmil
Crystal Structure of cas7 and AcrIE10 complex
Descriptor: Uncharacterized protein, type I-E Cascade subunit cas7
Authors:Zhang, Y, Yu, C.Z, Sun, S.Y.
Deposit date:2023-05-26
Release date:2024-07-24
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:A new anti-CRISPR gene promotes the spread of drug-resistance plasmids in Klebsiella pneumoniae.
Nucleic Acids Res., 52, 2024
6M0W
DownloadVisualize
BU of 6m0w by Molmil
Crystal structure of Streptococcus thermophilus Cas9 in complex with the AGAA PAM
Descriptor: CRISPR-associated endonuclease Cas9 1, DNA (28-MER), DNA (5'-D(*AP*AP*AP*GP*AP*AP*GP*C)-3'), ...
Authors:Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.
Deposit date:2020-02-23
Release date:2020-09-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal, 2020
6M0X
DownloadVisualize
BU of 6m0x by Molmil
Crystal structure of Streptococcus thermophilus Cas9 in complex with AGGA PAM
Descriptor: BARIUM ION, CRISPR-associated endonuclease Cas9 1, DNA (28-MER), ...
Authors:Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.
Deposit date:2020-02-23
Release date:2020-09-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.561 Å)
Cite:Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal, 2020
6Y59
DownloadVisualize
BU of 6y59 by Molmil
5-HT3A receptor in Salipro (apo, C5 symmetric)
Descriptor: 5-hydroxytryptamine receptor 3A
Authors:Zhang, Y, Dijkman, P.M, Zou, R, Zandl-Lang, M, Sanchez, R.M, Eckhardt-Strelau, L, Koefeler, H, Vogel, H, Yuan, S, Kudryashev, M.
Deposit date:2020-02-25
Release date:2020-12-23
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Asymmetric opening of the homopentameric 5-HT 3A serotonin receptor in lipid bilayers.
Nat Commun, 12, 2021
5URX
DownloadVisualize
BU of 5urx by Molmil
Structure of the contracted type VI secretion system sheath in Myxococcus xanthus
Descriptor: TssB, TssC
Authors:Chang, Y.-W, Rettberg, L.A, Jensen, G.J.
Deposit date:2017-02-13
Release date:2017-05-10
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (28 Å)
Cite:In vivo structures of an intact type VI secretion system revealed by electron cryotomography.
EMBO Rep., 18, 2017
6Y5A
DownloadVisualize
BU of 6y5a by Molmil
Serotonin-bound 5-HT3A receptor in Salipro
Descriptor: 5-hydroxytryptamine receptor 3A, SEROTONIN
Authors:Zhang, Y, Dijkman, P.M, Zou, R, Zandl-Lang, M, Sanchez, R.M, Eckhardt-Strelau, L, Koefeler, H, Vogel, H, Yuan, S, Kudryashev, M.
Deposit date:2020-02-25
Release date:2020-12-23
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Asymmetric opening of the homopentameric 5-HT 3A serotonin receptor in lipid bilayers.
Nat Commun, 12, 2021
4LA2
DownloadVisualize
BU of 4la2 by Molmil
Crystal structure of dimethylsulphoniopropionate (DMSP) lyase DddQ
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Dimethylsulphoniopropionate (DMSP) lyase DddQ, ZINC ION
Authors:Zhang, Y, Li, C.
Deposit date:2013-06-19
Release date:2014-01-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular insight into bacterial cleavage of oceanic dimethylsulfoniopropionate into dimethyl sulfide
Proc.Natl.Acad.Sci.USA, 111, 2014
7YPL
DownloadVisualize
BU of 7ypl by Molmil
Crystal structure of fibronectin type III domain variant, a VEGFR2-specific antagonist
Descriptor: Fibronectin, SULFATE ION
Authors:Chang, Y.T, Chen, C.Y, Chuang, W.J.
Deposit date:2022-08-03
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:A Novel Disulfide Bond Engineering of Fibronectin Type III Domain Enhances Thermostability and Solubility of VEGFR2-Specific Antagonist
To Be Published
5URW
DownloadVisualize
BU of 5urw by Molmil
Structure of the extended type VI secretion system sheath in Myxococcus xanthus
Descriptor: Hcp, TssB, TssC
Authors:Chang, Y.-W, Rettberg, L.A, Jensen, G.J.
Deposit date:2017-02-13
Release date:2017-05-10
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (24 Å)
Cite:In vivo structures of an intact type VI secretion system revealed by electron cryotomography.
EMBO Rep., 18, 2017
4EJU
DownloadVisualize
BU of 4eju by Molmil
Staphylococcus epidermidis TcaR full length
Descriptor: Transcriptional regulator TcaR
Authors:Chang, Y.M, Chen, C.K.M, Wang, A.H.J.
Deposit date:2012-04-07
Release date:2013-05-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural analysis of the antibiotic recognition mechanism of MarR family proteins
Acta Crystallogr.,Sect.D, 2013
5M5G
DownloadVisualize
BU of 5m5g by Molmil
Crystal structure of the Chaetomium Thermophilum polycomb repressive complex 2 (PRC2)
Descriptor: Fragment from molecular 2 (region containing putative polycomb protein Suz12), HISTONE H3 11-Mer peptide, Putative uncharacterized protein, ...
Authors:Zhang, Y, Justin, N, Wilson, J, Gamblin, S.
Deposit date:2016-10-21
Release date:2017-01-11
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Comment on "Structural basis of histone H3K27 trimethylation by an active polycomb repressive complex 2".
Science, 354, 2016
6Y5B
DownloadVisualize
BU of 6y5b by Molmil
5-HT3A receptor in Salipro (apo, asymmetric)
Descriptor: 5-hydroxytryptamine receptor 3A
Authors:Zhang, Y, Dijkman, P.M, Zou, R, Zandl-Lang, M, Sanchez, R.M, Eckhardt-Strelau, L, Koefeler, H, Vogel, H, Yuan, S, Kudryashev, M.
Deposit date:2020-02-25
Release date:2020-12-23
Last modified:2021-03-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Asymmetric opening of the homopentameric 5-HT 3A serotonin receptor in lipid bilayers.
Nat Commun, 12, 2021
8XMI
DownloadVisualize
BU of 8xmi by Molmil
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, C1 symmetry
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Ktr system potassium uptake protein A, Ktr system potassium uptake protein B, ...
Authors:Chang, Y.K, Chiang, W.T, Hu, N.J, Tsai, M.D.
Deposit date:2023-12-27
Release date:2024-04-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis and synergism of ATP and Na + activation in bacterial K + uptake system KtrAB.
Nat Commun, 15, 2024
8XMH
DownloadVisualize
BU of 8xmh by Molmil
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, vertical C2 symmetry axis
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Ktr system potassium uptake protein A, Ktr system potassium uptake protein B, ...
Authors:Chang, Y.K, Chiang, W.T, Hu, N.J, Tsai, M.D.
Deposit date:2023-12-27
Release date:2024-04-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structural basis and synergism of ATP and Na + activation in bacterial K + uptake system KtrAB.
Nat Commun, 15, 2024
4LA3
DownloadVisualize
BU of 4la3 by Molmil
Crystal structure of dimethylsulphoniopropionate (DMSP) lyase DddQ Y131A in complex with DMSP
Descriptor: 3-(dimethyl-lambda~4~-sulfanyl)propanoic acid, Dimethylsulphoniopropionate (DMSP) lyase DddQ, ZINC ION
Authors:Zhang, Y, Li, C.
Deposit date:2013-06-19
Release date:2014-01-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Molecular insight into bacterial cleavage of oceanic dimethylsulfoniopropionate into dimethyl sulfide
Proc.Natl.Acad.Sci.USA, 111, 2014
7T1F
DownloadVisualize
BU of 7t1f by Molmil
Crystal structure of GDP-bound T50I mutant of human KRAS4B
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, MAGNESIUM ION
Authors:Zhang, Y, Zhang, C.
Deposit date:2021-12-01
Release date:2022-12-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional analyses of a germline KRAS T50I mutation provide insights into Raf activation.
JCI Insight, 8, 2023
5M4Y
DownloadVisualize
BU of 5m4y by Molmil
Crystal structure of the Sec3/Sso2 complex at 2.20 angstrom resolution
Descriptor: Exocyst complex component SEC3, GLYCEROL, Protein SSO2
Authors:Zhang, Y.B, Dong, G.
Deposit date:2016-10-19
Release date:2017-02-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
Nat Commun, 8, 2017
4KDP
DownloadVisualize
BU of 4kdp by Molmil
TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3'), ...
Authors:Chang, Y.M, Chen, C.K.-M, Wang, A.H.-J.
Deposit date:2013-04-25
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:TcaR-ssDNA complex crystal structure reveals new DNA binding mechanism of the MarR family proteins.
Nucleic Acids Res., 42, 2014

226707

數據於2024-10-30公開中

PDB statisticsPDBj update infoContact PDBjnumon