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PDB: 622 件
7M69
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E1435Q Ycf1 mutant in inward-facing wide conformation
分子名称: Metal resistance protein YCF1
著者Khandelwal, N.K, Millan, C.R, Thaker, T.M, Tomasiak, T.M.
登録日2021-03-25
公開日2022-04-06
最終更新日2022-10-19
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献The structural basis for regulation of the glutathione transporter Ycf1 by regulatory domain phosphorylation.
Nat Commun, 13, 2022
7M68
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E1435Q Ycf1 mutant in inward-facing narrow conformation
分子名称: Metal resistance protein YCF1
著者Khandelwal, N.K, Millan, C.R, Thaker, T.M, Tomasiak, T.M.
登録日2021-03-25
公開日2022-04-06
最終更新日2022-10-19
実験手法ELECTRON MICROSCOPY (4.04 Å)
主引用文献The structural basis for regulation of the glutathione transporter Ycf1 by regulatory domain phosphorylation.
Nat Commun, 13, 2022
1RQ4
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Crystallographic Analysis of the Interaction of Nitric Oxide with Quaternary-T Human Hemoglobin, HEMOGLOBIN EXPOSED TO NO UNDER AEROBIC CONDITIONS
分子名称: Hemoglobin alpha chain, Hemoglobin beta chain, NITRIC OXIDE, ...
著者Chan, N.L, Kavanaugh, J.S, Rogers, P.H, Arnone, A.
登録日2003-12-04
公開日2003-12-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Crystallographic analysis of the interaction of nitric oxide with quaternary-T human hemoglobin.
Biochemistry, 43, 2004
3AQV
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Human AMP-activated protein kinase alpha 2 subunit kinase domain (T172D) complexed with compound C
分子名称: 5'-AMP-activated protein kinase catalytic subunit alpha-2, 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine
著者Handa, N, Takagi, T, Saijo, S, Kishishita, S, Toyama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-11-19
公開日2011-04-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural basis for compound C inhibition of the human AMP-activated protein kinase alpha 2 subunit kinase domain
Acta Crystallogr.,Sect.D, 67, 2011
7LG4
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Green fluorescent protein from Aequorea macrodactyla - amacGFP
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Bozhanova, N.G, Meiler, J.
登録日2021-01-19
公開日2021-01-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Heterogeneity of the GFP fitness landscape and data-driven protein design.
Elife, 11, 2022
2CWN
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Crystal structure of mouse transaldolase
分子名称: Transaldolase
著者Handa, N, Arai, R, Nishino, A, Uchikubo, T, Takemoto, C, Morita, S, Kinoshita, Y, Nagano, Y, Uda, H, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-22
公開日2005-12-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of mouse transaldolase
To be Published
2CW9
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Crystal structure of human Tim44 C-terminal domain
分子名称: PENTAETHYLENE GLYCOL, translocase of inner mitochondrial membrane
著者Handa, N, Kishishita, S, Morita, S, Kinoshita, Y, Nagano, Y, Uda, H, Terada, T, Uchikubo, T, Takemoto, C, Jin, Z, Chrzas, J, Chen, L, Liu, Z.-J, Wang, B.-C, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-17
公開日2005-12-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of the human Tim44 C-terminal domain in complex with pentaethylene glycol: ligand-bound form.
Acta Crystallogr.,Sect.D, 63, 2007
3WCA
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The complex structure of TcSQS with ligand, FSPP
分子名称: Farnesyltransferase, putative, MAGNESIUM ION, ...
著者Shang, N, Li, Q, Ko, T.P, Chan, H.C, Huang, C.H, Oldfield, E, Guo, R.T.
登録日2013-05-26
公開日2014-06-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Squalene synthase as a target for Chagas disease therapeutics.
Plos Pathog., 10, 2014
3WCE
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The complex structure of TcSQS with ligand, ER119884
分子名称: (3R)-3-{[2-benzyl-6-(3-methoxypropoxy)pyridin-3-yl]ethynyl}-1-azabicyclo[2.2.2]octan-3-ol, Farnesyltransferase, putative
著者Shang, N, Li, Q, Ko, T.P, Chan, H.C, Huang, C.H, Ren, F, Zheng, Y, Zhu, Z, Chen, C.C, Guo, R.T.
登録日2013-05-27
公開日2014-06-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Squalene synthase as a target for Chagas disease therapeutics.
Plos Pathog., 10, 2014
3WCC
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The complex structure of TcSQS with ligand, E5700
分子名称: (3R)-3-({2-benzyl-6-[(3R,4S)-3-hydroxy-4-methoxypyrrolidin-1-yl]pyridin-3-yl}ethynyl)-1-azabicyclo[2.2.2]octan-3-ol, Farnesyltransferase, putative
著者Shang, N, Li, Q, Ko, T.P, Chan, H.C, Huang, C.H, Ren, F, Zheng, Y, Zhu, Z, Chen, C.C, Guo, R.T.
登録日2013-05-27
公開日2014-06-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Squalene synthase as a target for Chagas disease therapeutics.
Plos Pathog., 10, 2014
1ODW
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BU of 1odw by Molmil
Native HIV-1 Proteinase
分子名称: HIV-1 PROTEASE, di-tert-butyl {iminobis[(2S,3S)-3-hydroxy-1-phenylbutane-4,2-diyl]}biscarbamate
著者Thanki, N, Kervinen, J, Wlodawer, A.
登録日1996-09-16
公開日1997-04-01
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Analysis of the Native and Drug-Resistant HIV-1 Proteinases Complexed with an Aminodiol Inhibitor
Protein Pept.Lett., 3, 1996
1ML1
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BU of 1ml1 by Molmil
PROTEIN ENGINEERING WITH MONOMERIC TRIOSEPHOSPHATE ISOMERASE: THE MODELLING AND STRUCTURE VERIFICATION OF A SEVEN RESIDUE LOOP
分子名称: 2-PHOSPHOGLYCOLIC ACID, TRIOSEPHOSPHATE ISOMERASE
著者Thanki, N, Zeelen, J.P, Mathieu, M, Jaenicke, R, Abagyan, R.A, Wierenga, R, Schliebs, W.
登録日1996-09-27
公開日1997-03-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Protein engineering with monomeric triosephosphate isomerase (monoTIM): the modelling and structure verification of a seven-residue loop.
Protein Eng., 10, 1997
1WMG
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BU of 1wmg by Molmil
Crystal structure of the UNC5H2 death domain
分子名称: SULFATE ION, SULFITE ION, netrin receptor Unc5h2
著者Handa, N, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-09
公開日2005-01-09
最終更新日2011-11-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the UNC5H2 death domain
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
3WSA
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The Tuberculosis Drug SQ109 Inhibits Trypanosoma cruzi Cell Proliferation and acts Synergistically with Posaconazole
分子名称: N-[(2Z)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine, Squalene synthase
著者Shang, N, Li, Q, Huang, C.H, Oldfield, E, Guo, R.T.
登録日2014-03-05
公開日2015-04-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献SQ109, a new drug lead for Chagas disease.
Antimicrob.Agents Chemother., 59, 2015
1WWH
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Crystal structure of the MPPN domain of mouse Nup35
分子名称: nucleoporin 35
著者Handa, N, Murayama, K, Kukimoto, M, Hamana, H, Uchikubo, T, Takemoto, C, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-01-05
公開日2005-07-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain
J.Mol.Biol., 363, 2006
1WUB
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Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8
分子名称: (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, conserved hypothetical protein TT1927b
著者Handa, N, Idaka, M, Terada, T, Hamana, H, Ishizuka, Y, Park, S.-Y, Tame, J.R.H, Doi-Katayama, Y, Hirota, H, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-12-03
公開日2004-12-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8
Protein Sci., 14, 2005
1X1K
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Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
分子名称: Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
著者Jiravanichanun, N, Hongo, C, Wu, G, Noguchi, K, Okuyama, K, Nishino, N, Silva, T.
登録日2005-04-05
公開日2005-06-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Unexpected puckering of hydroxyproline in the guest triplets, hyp-pro-gly and pro-allohyp-gly sandwiched between pro-pro-gly sequence
Chembiochem, 6, 2005
2OEY
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Solution Structure of a Designed Spirocyclic Helical Ligand Binding at a Two-Base Bulge Site in DNA
分子名称: (1R,3A'S,10'S,10A'R)-7-METHOXY-2-OXO-10',10A'-DIHYDRO-2H,3A'H-SPIRO[NAPHTHALENE-1,3'-PENTALENO[1,2-B]NAPHTHALEN]-10'-YL 2,6-DIDEOXY-2-(METHYLAMINO)-ALPHA-D-GALACTOPYRANOSIDE, DNA (25-MER)
著者Zhang, N, Lin, Y, Xiao, Z, Jones, G.B, Goldberg, I.H.
登録日2007-01-01
公開日2007-04-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of a Designed Spirocyclic Helical Ligand Binding at a Two-Base Bulge Site in DNA.
Biochemistry, 46, 2007
7XWY
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Crystal structure of spFft3 N-terminal truncation
分子名称: ATP-dependent helicase fft3, SULFATE ION
著者Zhang, N, Jiang, T, Huo, Y.
登録日2022-05-27
公開日2023-12-06
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of spFft3 N-terminal truncation
To Be Published
3WSB
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BU of 3wsb by Molmil
The Tuberculosis Drug SQ109 Inhibits Trypanosoma cruzi Cell Proliferation and acts Synergistically with Posaconazole
分子名称: Farnesyltransferase, putative, N-[(2Z)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine, ...
著者Shang, N, Li, Q, Huang, C.H, Oldfield, E, Guo, R.T.
登録日2014-03-05
公開日2015-04-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Tuberculosis Drug SQ109 Inhibits Trypanosoma cruzi Cell Proliferation and acts Synergistically with Posaconazole
To be Published
1HIV
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CRYSTAL STRUCTURE OF A COMPLEX OF HIV-1 PROTEASE WITH A DIHYDROETHYLENE-CONTAINING INHIBITOR: COMPARISONS WITH MOLECULAR MODELING
分子名称: 4-[(2R)-3-{[(1S,2S,3R,4S)-1-(cyclohexylmethyl)-2,3-dihydroxy-5-methyl-4-({(1S,2R)-2-methyl-1-[(pyridin-2-ylmethyl)carbamoyl]butyl}carbamoyl)hexyl]amino}-2-{[(naphthalen-1-yloxy)acetyl]amino}-3-oxopropyl]-1H-imidazol-3-ium, HIV-1 PROTEASE
著者Thanki, N, Wlodawer, A.
登録日1992-02-12
公開日1993-10-31
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a complex of HIV-1 protease with a dihydroxyethylene-containing inhibitor: comparisons with molecular modeling.
Protein Sci., 1, 1992
4K6R
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BU of 4k6r by Molmil
Crystal structure of GlmU in complex with ATP
分子名称: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Bifunctional protein GlmU, ...
著者Vithani, N, Prakash, B.
登録日2013-04-16
公開日2014-04-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献GlmU (N-acetylglucosamine-1-phosphate uridyltransferase) bound to three magnesium ions and ATP at the active site.
Acta Crystallogr.,Sect.F, 70, 2014
7WGI
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BU of 7wgi by Molmil
Crystal structure of AflSQS from Aspergillus flavus
分子名称: INDOLE, PHOSPHATE ION, Squalene synthase
著者Shang, N, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2021-12-28
公開日2022-11-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Structural and Bioinformatics Investigation of a Fungal Squalene Synthase and Comparisons with Other Membrane Proteins.
Acs Omega, 7, 2022
7WGH
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Crystal structure of AflSQS from Aspergillus flavus in complex with FSPP
分子名称: PHOSPHATE ION, PYROPHOSPHATE 2-, S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE, ...
著者Shang, N, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2021-12-28
公開日2022-11-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献A Structural and Bioinformatics Investigation of a Fungal Squalene Synthase and Comparisons with Other Membrane Proteins.
Acs Omega, 7, 2022
2JSE
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BU of 2jse by Molmil
NMR reveals absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA.
分子名称: RNA (5'-R(*GP*GP*AP*GP*UP*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*AP*UP*CP*UP*CP*C)-3')
著者Shankar, N.
登録日2007-07-03
公開日2007-11-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR Reveals the Absence of Hydrogen Bonding in Adjacent UU and AG Mismatches in an Isolated Internal Loop from Ribosomal RNA
Biochemistry, 46, 2007

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