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PDB: 446 results

1F4K
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CRYSTAL STRUCTURE OF THE REPLICATION TERMINATOR PROTEIN/B-SITE DNA COMPLEX
Descriptor: 5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*AP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*TP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3', REPLICATION TERMINATION PROTEIN
Authors:Wilce, J.A, Vivian, J.P, Hastings, A.F, Otting, G, Folmer, R.H.A, Duggin, I.G, Wake, R.G, Wilce, M.C.J.
Deposit date:2000-06-08
Release date:2001-06-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the RTP-DNA complex and the mechanism of polar replication fork arrest
Nat.Struct.Biol., 8, 2001
1F5O
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2.9 ANGSTROM CRYSTAL STRUCTURE OF DEOXYGENATED LAMPREY HEMOGLOBIN V IN THE SPACE GROUP P2(1)2(1)2(1)
Descriptor: HEMOGLOBIN V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Heaslet, H.A, Royer Jr, W.E.
Deposit date:2000-06-15
Release date:2000-08-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystalline ligand transitions in lamprey hemoglobin. Structural evidence for the regulation of oxygen affinity.
J.Biol.Chem., 276, 2001
2PZE
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Minimal human CFTR first nucleotide binding domain as a head-to-tail dimer
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cystic fibrosis transmembrane conductance regulator, MAGNESIUM ION
Authors:Atwell, S, Conners, K, Emtage, S, Gheyi, T, Glenn, N.R, Hendle, J, Lewis, H.A, Lu, F, Rodgers, L.A, Romero, R, Sauder, J.M, Smith, D, Tien, H, Wasserman, S.R, Zhao, X.
Deposit date:2007-05-17
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of a minimal human CFTR first nucleotide-binding domain as a monomer, head-to-tail homodimer, and pathogenic mutant.
Protein Eng.Des.Sel., 23, 2010
1F5P
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2.9 ANGSTROM CRYSTAL STRUCTURE OF LAMPREY HEMOGLOBIN THAT HAS BEEN EXPOSED TO CARBON MONOXIDE.
Descriptor: CARBON MONOXIDE, HEMOGLOBIN V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Heaslet, H.A, Royer Jr, W.E.
Deposit date:2000-06-15
Release date:2000-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystalline ligand transitions in lamprey hemoglobin. Structural evidence for the regulation of oxygen affinity.
J.Biol.Chem., 276, 2001
2PZF
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Minimal human CFTR first nucleotide binding domain as a head-to-tail dimer with delta F508
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cystic fibrosis transmembrane conductance regulator, MAGNESIUM ION
Authors:Atwell, S, Conners, K, Emtage, S, Gheyi, T, Glenn, N.R, Hendle, J, Lewis, H.A, Lu, F, Rodgers, L.A, Romero, R, Sauder, J.M, Smith, D, Tien, H, Wasserman, S.R, Zhao, X.
Deposit date:2007-05-18
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of a minimal human CFTR first nucleotide-binding domain as a monomer, head-to-tail homodimer, and pathogenic mutant.
Protein Eng.Des.Sel., 23, 2010
2N4U
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NMR structure of Fbp28 WW domain E454Y mutant
Descriptor: Transcription elongation regulator 1
Authors:Medina, J, Macias, M, Martin-Malpartida, P, Scheraga, H.A.
Deposit date:2015-07-01
Release date:2015-10-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Preventing fibril formation of a protein by selective mutation.
Proc.Natl.Acad.Sci.USA, 112, 2015
2N4R
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NMR structure of Fbp28 WW domain L453D mutant
Descriptor: Transcription elongation regulator 1
Authors:Medina, J, Macias, M, Martin-Malpartida, P, Scheraga, H.A.
Deposit date:2015-07-01
Release date:2015-10-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Preventing fibril formation of a protein by selective mutation.
Proc.Natl.Acad.Sci.USA, 112, 2015
2PNJ
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Crystal structure of human ferrochelatase mutant with Phe 337 replaced by Ala
Descriptor: CHOLIC ACID, FE2/S2 (INORGANIC) CLUSTER, Ferrochelatase, ...
Authors:Dailey, H.A, Wu, C.-K, Horanyi, P, Medlock, A.E, Najahi-Missaoui, W, Burden, A.E, Dailey, T.A, Rose, J.P.
Deposit date:2007-04-24
Release date:2007-10-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Altered orientation of active site residues in variants of human ferrochelatase. Evidence for a hydrogen bond network involved in catalysis
Biochemistry, 46, 2007
2QD3
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Wild type human ferrochelatase crystallized with ammonium sulfate
Descriptor: CHOLIC ACID, FE2/S2 (INORGANIC) CLUSTER, Ferrochelatase, ...
Authors:Medlock, A.E, Dailey, T.A, Ross, T.A, Dailey, H.A, Lanzilotta, W.N.
Deposit date:2007-06-20
Release date:2007-10-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A pi-Helix Switch Selective for Porphyrin Deprotonation and Product Release in Human Ferrochelatase.
J.Mol.Biol., 373, 2007
8QOD
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CRYSTAL STRUCTURE OF FVIIA IN COMPLEX WITH A BENZAMIDINE-BASED INHIBITOR
Descriptor: 3-[2-bromanyl-4-[(1~{S})-1-[[3-[(4-carbamimidoylphenyl)amino]-3-oxidanylidene-propanoyl]amino]ethyl]phenoxy]benzoic acid, CALCIUM ION, CHLORIDE ION, ...
Authors:Schreuder, H.A, Liesum, A.
Deposit date:2023-09-28
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.573 Å)
Cite:Crystallography and molecular simulations capture S1 pocket collapse in allosteric regulation of factor VIIa and other serine proteases.
To be published
1I4W
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THE CRYSTAL STRUCTURE OF THE TRANSCRIPTION FACTOR SC-MTTFB OFFERS INTRIGUING INSIGHTS INTO MITOCHONDRIAL TRANSCRIPTION
Descriptor: MITOCHONDRIAL REPLICATION PROTEIN MTF1, XENON
Authors:Schubot, F.D, Chen, C.-J, Rose, J.P, Dailey, T.A, Dailey, H.A, Wang, B.-C.
Deposit date:2001-02-23
Release date:2001-10-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription.
Protein Sci., 10, 2001
2HRC
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BU of 2hrc by Molmil
1.7 angstrom structure of human ferrochelatase variant R115L
Descriptor: CHLORIDE ION, CHOLIC ACID, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Medlock, A, Swartz, L, Dailey, T.A, Dailey, H.A, Lanzilotta, W.N.
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Substrate interactions with human ferrochelatase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2R69
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Crystal structure of Fab 1A1D-2 complexed with E-DIII of Dengue virus at 3.8 angstrom resolution
Descriptor: Heavy chain of 1A1D-2, Light chain of 1A1D-2, Major envelope protein E
Authors:Lok, S.M, Kostyuchenko, V.K, Nybakken, G.E, Holdaway, H.A, Battisti, A.J, Sukupolvi-petty, S, Sedlak, D, Fremont, D.H, Chipman, P.R, Roehrig, J.T, Diamond, M.S, Kuhn, R.J, Rossmann, M.G.
Deposit date:2007-09-05
Release date:2007-12-25
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins.
Nat.Struct.Mol.Biol., 15, 2008
2HRE
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Structure of human ferrochelatase variant E343K with protoporphyrin IX bound
Descriptor: CHOLIC ACID, FE2/S2 (INORGANIC) CLUSTER, Ferrochelatase, ...
Authors:Medlock, A, Swartz, L, Dailey, T.A, Dailey, H.A, Lanzilotta, W.N.
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate interactions with human ferrochelatase
Proc.Natl.Acad.Sci.Usa, 104, 2007
1A5Q
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BU of 1a5q by Molmil
P93A VARIANT OF BOVINE PANCREATIC RIBONUCLEASE A
Descriptor: RIBONUCLEASE A, SULFATE ION
Authors:Pearson, M.A, Karplus, P.A, Dodge, R.W, Laity, J.H, Scheraga, H.A.
Deposit date:1998-02-17
Release date:1998-05-27
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of two mutants that have implications for the folding of bovine pancreatic ribonuclease A.
Protein Sci., 7, 1998
1A60
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NMR STRUCTURE OF A CLASSICAL PSEUDOKNOT: INTERPLAY OF SINGLE-AND DOUBLE-STRANDED RNA, 24 STRUCTURES
Descriptor: TYMV PSEUDOKNOT
Authors:Kolk, M.H, Van Der Graaf, M, Wijmenga, S.S, Pleij, C.W.A, Heus, H.A, Hilbers, C.W.
Deposit date:1998-03-04
Release date:1998-05-27
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA.
Science, 280, 1998
2R6P
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Fit of E protein and Fab 1A1D-2 into 24 angstrom resolution cryoEM map of Fab complexed with dengue 2 virus.
Descriptor: Heavy chain of 1A1D-2, Light chain of 1A1D-2, Major envelope protein E
Authors:Lok, S.M, Kostyuchenko, V.K, Holdaway, H.A, Chipman, P.R, Kuhn, R.J, Rossmann, M.G.
Deposit date:2007-09-06
Release date:2007-12-25
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (24 Å)
Cite:Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins.
Nat.Struct.Mol.Biol., 15, 2008
2IL6
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HUMAN INTERLEUKIN-6, NMR, 32 STRUCTURES
Descriptor: INTERLEUKIN-6
Authors:Xu, G.Y, Yu, H.A, Hong, J, Stahl, M, Mcdonagh, T, Kay, L.E, Cumming, D.A.
Deposit date:1997-01-31
Release date:1998-02-04
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of recombinant human interleukin-6.
J.Mol.Biol., 268, 1997
2J4I
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CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
Descriptor: 1-PYRROLIDINEACETAMIDE, 3-[[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]AMINO]-ALPHA-METHYL-N-(1-METHYLETHYL)-N-[2-[(METHYLSULFONYL)AMINO]ETHYL]-2-OXO-, (ALPHAS,3S)-, ...
Authors:Young, R.J, Campbell, M, Borthwick, A.D, Brown, D, Chan, C, Convery, M.A, Crowe, M.C, Dayal, S, Diallo, H, Kelly, H.A, Paul King, N, Kleanthous, S, Kurtis, C.L, Mason, A.M, Mordaunt, J.E, Patel, C, Pateman, A.J, Senger, S, Shah, G.P, Smith, P.W, Watson, N.S, Weston, H.E, Zhou, P.
Deposit date:2006-08-31
Release date:2006-09-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure- and Property-Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Acyclic Alanyl Amides as P4 Motifs.
Bioorg.Med.Chem.Lett., 16, 2006
1IHF
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INTEGRATION HOST FACTOR/DNA COMPLEX
Descriptor: CADMIUM ION, DNA (35-MER), DNA (5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*C P*AP*CP*C)-3'), ...
Authors:Rice, P.A, Yang, S.-W, Mizuuchi, K, Nash, H.A.
Deposit date:1996-08-21
Release date:1997-02-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn.
Cell(Cambridge,Mass.), 87, 1996
1B0E
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CRYSTAL STRUCTURE OF PORCINE PANCREATIC ELASTASE WITH MDL 101,146
Descriptor: 1-{3-METHYL-2-[4-(MORPHOLINE-4-CARBONYL)-BENZOYLAMINO]-BUTYRYL}-PYRROLIDINE-2-CARBOXYLIC ACID (3,3,4,4,4-PENTAFLUORO-1-ISOPROPYL-2-OXO-BUTYL)-AMIDE, CALCIUM ION, PROTEIN (ELASTASE)
Authors:Schreuder, H.A, Metz, W.A, Peet, N.P, Pelton, J.T, Tardif, C.
Deposit date:1998-11-09
Release date:1998-11-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inhibition of human neutrophil elastase. 4. Design, synthesis, X-ray crystallographic analysis, and structure-activity relationships for a series of P2-modified, orally active peptidyl pentafluoroethyl ketones.
J.Med.Chem., 41, 1998
1ATO
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BU of 1ato by Molmil
THE STRUCTURE OF THE ISOLATED, CENTRAL HAIRPIN OF THE HDV ANTIGENOMIC RIBOZYME, NMR, 10 STRUCTURES
Descriptor: RNA (5'-R(*GP*GP*CP*AP*CP*CP*UP*CP*CP*UP*CP*GP*CP*GP*GP*UP*GP*CP*C)-3')
Authors:Kolk, M.H, Heus, H.A, Hilbers, C.W.
Deposit date:1997-08-14
Release date:1997-11-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The structure of the isolated, central hairpin of the HDV antigenomic ribozyme: novel structural features and similarity of the loop in the ribozyme and free in solution.
EMBO J., 16, 1997
1J6X
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CRYSTAL STRUCTURE OF HELICOBACTER PYLORI LUXS
Descriptor: AUTOINDUCER-2 PRODUCTION PROTEIN LUXS, METHIONINE, ZINC ION
Authors:Lewis, H.A, Furlong, E.B, Bergseid, M.G, Sanderson, W.E, Buchanan, S.G.
Deposit date:2001-05-14
Release date:2001-06-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs.
Structure, 9, 2001
2J94
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CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
Descriptor: 5-(5-CHLORO-2-THIENYL)-N-{(3S)-1-[(1S)-1-METHYL-2-MORPHOLIN-4-YL-2-OXOETHYL]-2-OXOPYRROLIDIN-3-YL}-1H-1,2,4-TRIAZOLE-3-SULFONAMIDE, CALCIUM ION, COAGULATION FACTOR X
Authors:Chan, C, Borthwick, A.D, Brown, D, Campbell, M, Chaudry, L, Chung, C.W, Convery, M.A, Hamblin, J.N, Johnstone, L, Kelly, H.A, Kleanthous, S, Burns-Kurtis, C.L, Patikis, A, Patel, C, Pateman, A.J, Senger, S, Shah, G.P, Toomey, J.R, Watson, N.S, Weston, H.E, Whitworth, C, Young, R.J, Zhou, P.
Deposit date:2006-11-02
Release date:2007-03-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Factor Xa Inhibitors: S1 Binding Interactions of a Series of N-{(3S)-1-[(1S)-1-Methyl-2-Morpholin-4-Yl-2-Oxoethyl]-2-Oxopyrrolidin-3-Yl}Sulfonamides.
J.Med.Chem., 50, 2007
1IRA
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COMPLEX OF THE INTERLEUKIN-1 RECEPTOR WITH THE INTERLEUKIN-1 RECEPTOR ANTAGONIST (IL1RA)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, INTERLEUKIN-1 RECEPTOR, INTERLEUKIN-1 RECEPTOR ANTAGONIST
Authors:Schreuder, H.A, Tardif, C, Tramp-Kalmeyer, S, Soffientini, A, Sarubbi, E, Akeson, A, Bowlin, T, Yanofsky, S, Barrett, R.W.
Deposit date:1998-04-09
Release date:1998-06-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A new cytokine-receptor binding mode revealed by the crystal structure of the IL-1 receptor with an antagonist.
Nature, 386, 1997

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