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PDB: 78 results

219D
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BU of 219d by Molmil
DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, James, T.L.
Deposit date:1995-07-25
Release date:1995-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints.
Biochemistry, 34, 1995
1E68
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BU of 1e68 by Molmil
Solution structure of bacteriocin AS-48
Descriptor: AS-48 PROTEIN
Authors:Gonzalez, C, Langdon, G, Bruix, M, Galvez, A, Valdivia, E, Maqueda, M, Rico, M.
Deposit date:2000-08-09
Release date:2000-10-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Bacteriocin as-48, a Microbial Cyclic Polypeptide Structurally and Functionally Related to Mammalian Nk-Lysin
Proc.Natl.Acad.Sci.USA, 97, 2000
1H20
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BU of 1h20 by Molmil
Solution structure of the potato carboxypeptidase inhibitor
Descriptor: METALLOCARBOXYPEPTIDASE INHIBITOR
Authors:Gonzalez, C, Neira, J.L, Ventura, S, Bronsoms, S, Aviles, F.X, Rico, M.
Deposit date:2002-07-29
Release date:2003-05-09
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Structure and Dynamics of the Potato Carboxypeptidase Inhibitor by 1H and 15N NMR.
Proteins, 50, 2003
2KP3
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BU of 2kp3 by Molmil
Structure of ANA-RNA hybrid duplex
Descriptor: RNA (5'-R(*(GAO)P*(CAR)P*(UAR)P*(A5O)P*(UAR)P*(A5O)P*(A5O)P*(UAR)P*(GAO)P*(GAO))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, Martn-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G.
Deposit date:2009-10-06
Release date:2010-02-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.
Nucleic Acids Res., 38, 2010
2KP4
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BU of 2kp4 by Molmil
Structure of 2'F-ANA/RNA hybrid duplex
Descriptor: DNA (5'-D(*(GFL)P*(CFL)P*(TAF)P*(A5L)P*(TAF)P*(A5L)P*(A5L)P*(TAF)P*(GFL)P*(GFL))-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, Martin-Pintado, N, Watts, J, Gomez-Pinto, I, Dhama, M, Orozco, M, Schwartzentruber, J, Portella, G.
Deposit date:2009-10-06
Release date:2010-02-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.
Nucleic Acids Res., 38, 2010
6FC9
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BU of 6fc9 by Molmil
The 1,8-bis(aminomethyl)anthracene and Quadruplex-duplex junction complex
Descriptor: DNA (27-MER), [8-(azaniumylmethyl)anthracen-1-yl]methylazanium
Authors:Santana, A, Serrano, I, Montalvillo-Jimenez, L, Corzana, F, Bastida, A, Jimenez-Barbero, J, Gonzalez, C, Asensio, J.L.
Deposit date:2017-12-20
Release date:2019-04-10
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:De Novo Design of Selective Quadruplex-Duplex Junction Ligands and Structural Characterisation of Their Binding Mode: Targeting the G4 Hot-Spot.
Chemistry, 2020
1PNB
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BU of 1pnb by Molmil
STRUCTURE OF NAPIN BNIB, NMR, 10 STRUCTURES
Descriptor: NAPIN BNIB
Authors:Rico, M, Bruix, M, Gonzalez, C, Monsalve, R, Rodriguez, R.
Deposit date:1996-09-17
Release date:1997-09-17
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:1H NMR assignment and global fold of napin BnIb, a representative 2S albumin seed protein.
Biochemistry, 35, 1996
2CMN
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BU of 2cmn by Molmil
A Proximal Arginine Residue in the Switching Mechanism of the FixL Oxygen Sensor
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL
Authors:Gilles-Gonzalez, M.-A, Caceres, A.I, Silva Sousa, E.H, Tomchick, D.R, Brautigam, C.A, Gonzalez, C, Machius, M.
Deposit date:2006-05-11
Release date:2007-05-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Proximal Arginine R206 Participates in Switching of the Bradyrhizobium Japonicum Fixl Oxygen Sensor
J.Mol.Biol., 360, 2006
1ZAE
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BU of 1zae by Molmil
Solution structure of the functional domain of phi29 replication organizer p16.7c
Descriptor: Early protein GP16.7
Authors:Asensio, J.L, Albert, A, Munoz-Espin, D, Gonzalez, C, Hermoso, J, Villar, L, Jimenez-Barbero, J, Salas, M, Meijer, W.J.J.
Deposit date:2005-04-06
Release date:2005-04-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the functional domain of phi29 replication organizer: insights into oligomerization and dna binding
J.Biol.Chem., 280, 2005
1ZUG
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BU of 1zug by Molmil
STRUCTURE OF PHAGE 434 CRO PROTEIN, NMR, 20 STRUCTURES
Descriptor: PHAGE 434 CRO PROTEIN
Authors:Padmanabhan, S, Jimenez, M.A, Gonzalez, C, Sanz, J.M, Gimenez-Gallego, G, Rico, M.
Deposit date:1997-03-14
Release date:1997-07-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure and stability of phage 434 Cro protein.
Biochemistry, 36, 1997
2KSS
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BU of 2kss by Molmil
NMR structure of Myxococcus xanthus antirepressor CarS1
Descriptor: Carotenogenesis protein carS
Authors:Jimenez, M, Gonzalez, C, Padmanabhan, S, Leon, E, Navarro-Aviles, G, Elias-Arnanz, M.
Deposit date:2010-01-13
Release date:2010-05-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A bacterial antirepressor with SH3 domain topology mimics operator DNA in sequestering the repressor DNA recognition helix.
Nucleic Acids Res., 38, 2010
2JO4
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BU of 2jo4 by Molmil
Tetrameric structure of KIA7 peptide
Descriptor: KIA7
Authors:Lopez de la Osa, J, Gonzalez, C, Laurents, D.V, Chakrabartty, A, Bateman, D.A.
Deposit date:2007-02-21
Release date:2007-09-18
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Getting specificity from simplicity in putative proteins from the prebiotic earth.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2K8Z
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BU of 2k8z by Molmil
Dimeric solution structure of the DNA loop d(TCGTTGCT)
Descriptor: 5'-D(*TP*CP*GP*TP*TP*GP*CP*T)-3'
Authors:Viladoms, J, Escaja, N, Frieden, M, Gomez-Pinto, I, Pedroso, E, Gonzalez, C.
Deposit date:2008-09-29
Release date:2009-04-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Self-association of short DNA loops through minor groove C:G:G:C tetrads.
Nucleic Acids Res., 37, 2009
2WAE
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BU of 2wae by Molmil
PENICILLIN-BINDING PROTEIN 2B (PBP-2B) FROM STREPTOCOCCUS PNEUMONIAE (STRAIN 5204)
Descriptor: PENICILLIN-BINDING PROTEIN 2B, ZINC ION
Authors:Contreras-Martel, C, Dahout-Gonzalez, C, Dos-Santos-Martins, A, Kotnik, M, Dessen, A.
Deposit date:2009-02-05
Release date:2009-02-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Pbp Active Site Flexibility as the Key Mechanism for Beta-Lactam Resistance in Pneumococci
J.Mol.Biol., 387, 2009
2WAF
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BU of 2waf by Molmil
PENICILLIN-BINDING PROTEIN 2B (PBP-2B) FROM STREPTOCOCCUS PNEUMONIAE (STRAIN R6)
Descriptor: CHLORIDE ION, PENICILLIN-BINDING PROTEIN 2B
Authors:Contreras-Martel, C, Dahout-Gonzalez, C, Dos-Santos-Martins, A, Kotnik, M, Dessen, A.
Deposit date:2009-02-05
Release date:2009-02-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Pbp Active Site Flexibility as the Key Mechanism for Beta-Lactam Resistance in Pneumococci
J.Mol.Biol., 387, 2009
8S4N
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BU of 8s4n by Molmil
An i-motif/B-DNA aptamer with high affinity for influenza A virus
Descriptor: DNA (43-MER)
Authors:Tsvetkov, V, Mir, B, Alieva, R, Arutyunyan, A, Oleynikov, I, Novikov, R, Boravleva, E, Kamzeeva, P, Zatsepin, T, Aralov, A, Gonzalez, C, Zavyalova, E.
Deposit date:2024-02-21
Release date:2024-12-18
Last modified:2025-01-22
Method:SOLUTION NMR
Cite:Unveiling the unusual i-motif-derived architecture of a DNA aptamer exhibiting high affinity for influenza A virus.
Nucleic Acids Res., 53, 2025
2WAD
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BU of 2wad by Molmil
PENICILLIN-BINDING PROTEIN 2B (PBP-2B) FROM STREPTOCOCCUS PNEUMONIAE (STRAIN 5204)
Descriptor: PENICILLIN-BINDING PROTEIN 2B, ZINC ION
Authors:Contreras-Martel, C, Dahout-Gonzalez, C, Dos-Santos-Martins, A, Kotnik, M, Dessen, A.
Deposit date:2009-02-05
Release date:2009-02-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Pbp Active Site Flexibility as the Key Mechanism for Beta-Lactam Resistance in Pneumococci
J.Mol.Biol., 387, 2009
1OKC
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BU of 1okc by Molmil
structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 3-LAURYLAMIDO-N,N'-DIMETHYLPROPYLAMINOXYDE, ADP, ...
Authors:Pebay-Peyroula, E, Dahout-Gonzalez, C, Kahn, R, Trezeguet, V, Lauquin, G.J.-M, Brandolin, G.
Deposit date:2003-07-21
Release date:2003-11-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Mitochondrial Adp/ATP Carrier in Complex with Carboxyatractyloside
Nature, 426, 2003
2AAS
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BU of 2aas by Molmil
HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF RIBONUCLEASE A IN SOLUTION BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Descriptor: RIBONUCLEASE A
Authors:Santoro, J, Gonzalez, C, Bruix, M, Neira, J.L, Nieto, J.L, Herranz, J, Rico, M.
Deposit date:1992-11-20
Release date:1994-01-31
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy.
J.Mol.Biol., 229, 1993
2K40
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BU of 2k40 by Molmil
NMR structure of HESX-1 homeodomain double mutant R31L/E42L
Descriptor: Homeobox expressed in ES cells 1
Authors:Asensio, J, Torrado, M, Gonzalez, C, Bastida, A.
Deposit date:2008-05-26
Release date:2009-05-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The role of conserved salt-bridges on homeodomain stability
To be Published
8PWR
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BU of 8pwr by Molmil
TINA-conjugated antiparallel DNA triplex
Descriptor: DNA (5'-D(*AP*GP*GP*AP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*TP*CP*CP*T)-3'), DNA (5'-D(*TP*GP*GP*TP*GP*(J32)P*GP*T)-3')
Authors:Garavis, M, Edwards, P.J.B, Serrano-Chacon, I, Doluca, O, Filichev, V.V, Gonzalez, C.
Deposit date:2023-07-21
Release date:2024-01-17
Last modified:2024-03-27
Method:SOLUTION NMR
Cite:Understanding intercalative modulation of G-rich sequence folding: solution structure of a TINA-conjugated antiparallel DNA triplex.
Nucleic Acids Res., 52, 2024
7O5E
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BU of 7o5e by Molmil
The structure of an i-motif/duplex junction at neutral pH
Descriptor: I-motif/duplex junction (IDJ)
Authors:Serrano-Chacon, I, Mir, B, Escaja, N, Gonzalez, C.
Deposit date:2021-04-08
Release date:2021-09-01
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure of i-Motif/Duplex Junctions at Neutral pH.
J.Am.Chem.Soc., 143, 2021
7ZYX
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BU of 7zyx by Molmil
Dimeric i-motif from 2'Farabinocytidine-modified TC5
Descriptor: DNA (5'-D(*TP*(CFL)P*(CFL)P*(CFL)P*(CFL)P*(CFL))-3')
Authors:Garavis, M, El Khoury, R, Damha, M.J, Gonzalez, C.
Deposit date:2022-05-25
Release date:2023-03-01
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:i-Motif folding intermediates with zero-nucleotide loops are trapped by 2'-fluoroarabinocytidine via F···H and O···H hydrogen bonds.
Commun Chem, 6, 2023
8QE4
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BU of 8qe4 by Molmil
Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions
Descriptor: DNA (5'-D(*CP*(FRG)P*CP*(FRG)P*CP*(FRG))-3')
Authors:El-Khoury, R, Cabrero, C, Movilla, S, Friedland, D, Thorpe, J.D, Roman, M, Orozco, M, Gonzalez, C, Damha, M.
Deposit date:2023-08-30
Release date:2024-06-26
Last modified:2024-07-31
Method:SOLUTION NMR
Cite:Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions.
Nucleic Acids Res., 52, 2024
8QDU
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Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions
Descriptor: DNA (5'-D(*(FC)P*GP*(FC)P*GP*(FC)P*G)-3')
Authors:El-Khoury, R, Cabrero, C, Movilla, S, Thorpe, J.D, Roman, M, Orozco, M, Gonzalez, C, Damha, M.J.
Deposit date:2023-08-30
Release date:2024-06-26
Last modified:2024-07-31
Method:SOLUTION NMR
Cite:Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions.
Nucleic Acids Res., 52, 2024

 

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