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PDB: 1718 results

3V3V
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BU of 3v3v by Molmil
Structural and functional analysis of quercetagetin, a natural JNK1 inhibitor
Descriptor: 3,5,6,7-TETRAHYDROXY-2-(3,4-DIHYDROXYPHENYL)-4H-CHROMEN-4-ONE, C-Jun-amino-terminal kinase-interacting protein 1, CHLORIDE ION, ...
Authors:Baek, S, Kang, N.J, Popowicz, G.M, Arciniega, M, Jung, S.K, Byun, S, Song, N.R, Heo, Y.S, Kim, B.Y, Lee, H.J, Holak, T.A, Augustin, M, Bode, A.M, Huber, R, Dong, Z, Lee, K.W.
Deposit date:2011-12-14
Release date:2012-12-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Functional Analysis of the Natural JNK1 Inhibitor Quercetagetin.
J.Mol.Biol., 425, 2013
4A69
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BU of 4a69 by Molmil
Structure of HDAC3 bound to corepressor and inositol tetraphosphate
Descriptor: ACETATE ION, D-MYO INOSITOL 1,4,5,6 TETRAKISPHOSPHATE, GLYCEROL, ...
Authors:Watson, P.J, Fairall, L, Santos, G.M, Schwabe, J.W.R.
Deposit date:2011-11-01
Release date:2012-01-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure of Hdac3 Bound to Co-Repressor and Inositol Tetraphosphate.
Nature, 481, 2012
7YLT
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BU of 7ylt by Molmil
Structure of a bacteria protein
Descriptor: Putative ABC transporter, substrate-binding protein
Authors:Zhang, H, Ma, Y.J, Yu, G.M, Li, X.Z.
Deposit date:2022-07-26
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a bacteria protein
To Be Published
7YLS
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BU of 7yls by Molmil
Structure of a bacteria protein complex
Descriptor: ACETATE ION, Aromatic-ring-hydroxylating dioxygenase beta subunit, FE (III) ION, ...
Authors:Zhang, H, Ma, Y.J, Yu, G.M, Li, X.Z.
Deposit date:2022-07-26
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a bacteria protein complex
To Be Published
7YLR
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BU of 7ylr by Molmil
Structure of a bacteria protein
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, Ferredoxin
Authors:Zhang, H, Ma, Y.J, Yu, G.M, Li, X.Z.
Deposit date:2022-07-26
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structure of a bacteria protein
To Be Published
7YK1
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BU of 7yk1 by Molmil
Structural basis of human PRPS2 filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Lu, G.M, Hu, H.H, Liu, J.L.
Deposit date:2022-07-21
Release date:2023-08-02
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural basis of human PRPS2 filaments.
Cell Biosci, 13, 2023
4WWQ
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BU of 4wwq by Molmil
Apo structure of the Grb7 SH2 domain
Descriptor: Growth factor receptor-bound protein 7, MALONIC ACID
Authors:Watson, G.M, Ambaye, N.D, Wilce, M.C, Wilce, J.A.
Deposit date:2014-11-12
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Cyclic Peptides Incorporating Phosphotyrosine Mimetics as Potent and Specific Inhibitors of the Grb7 Breast Cancer Target.
J.Med.Chem., 58, 2015
4X6S
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BU of 4x6s by Molmil
Grb7 SH2 domain with phosphotyrosine mimetic inhibitor peptide
Descriptor: Growth factor receptor-bound protein 7, Phosphotyrosine mimetic inhibitor peptide G7-TEM1
Authors:Watson, G.M, Panjikar, S, Wilce, M.C, Wilce, J.A.
Deposit date:2014-12-09
Release date:2015-09-23
Last modified:2015-10-28
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Cyclic Peptides Incorporating Phosphotyrosine Mimetics as Potent and Specific Inhibitors of the Grb7 Breast Cancer Target.
J.Med.Chem., 58, 2015
4WSN
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BU of 4wsn by Molmil
Crystal structure of the COP9 signalosome, a P1 crystal form
Descriptor: COP9 signalosome complex subunit 1, COP9 signalosome complex subunit 2, COP9 signalosome complex subunit 3, ...
Authors:Bunker, R.D, Lingaraju, G.M, Thoma, N.H.
Deposit date:2014-10-28
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Cullin-RING ubiquitin E3 ligase regulation by the COP9 signalosome.
Nature, 531, 2016
8FG2
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BU of 8fg2 by Molmil
SARS-CoV-2 Nucleocapsid dimer structure determined from COVID-19 patients
Descriptor: Nucleoprotein
Authors:Casasanta, M, Jonaid, G.M, Kaylor, L, Luqiu, W, DiCecco, L, Solares, M, Berry, S, Kelly, D.F.
Deposit date:2022-12-12
Release date:2023-01-11
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Structural Insights of the SARS-CoV-2 Nucleocapsid Protein: Implications for the Inner-workings of Rapid Antigen Tests.
Microsc Microanal, 29, 2023
3ITI
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BU of 3iti by Molmil
Structure of bovine trypsin with the MAD triangle B3C
Descriptor: 5-amino-2,4,6-tribromobenzene-1,3-dicarboxylic acid, BENZAMIDINE, CALCIUM ION, ...
Authors:Beck, T, da Cunha, C.E, Sheldrick, G.M.
Deposit date:2009-08-28
Release date:2009-10-27
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:How to get the magic triangle and the MAD triangle into your protein crystal.
Acta Crystallogr.,Sect.F, 65, 2009
8FB3
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BU of 8fb3 by Molmil
PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform
Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, MAGNESIUM ION, RNA (34-MER) Riboswitch
Authors:Wedekind, J.E, Schroeder, G.M, Jenkins, J.L.
Deposit date:2022-11-29
Release date:2023-02-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:A riboswitch separated from its ribosome-binding site still regulates translation.
Nucleic Acids Res., 51, 2023
7XRV
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BU of 7xrv by Molmil
Bacteroides thetaiotaomicron ferulic acid esterase - S150A (BT_4077-S150A) complex with trans-methylferulate
Descriptor: CALCIUM ION, Ferulic acid esterase, Trans-methylferulate
Authors:Du, G.M, Wang, Y.L, Xin, F.J.
Deposit date:2022-05-11
Release date:2023-11-22
Method:X-RAY DIFFRACTION (2.713 Å)
Cite:Insights into the regulatory mechanism of BtFae activity by oligomerization and a distinct substrate binding pocket adjacent to the active site
To Be Published
7XRT
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BU of 7xrt by Molmil
Bacteroides thetaiotaomicron ferulic acid esterase (BT_4077)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Ferulic acid esterase
Authors:Du, G.M, Wang, Y.L, Xin, F.J.
Deposit date:2022-05-11
Release date:2023-11-22
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Insights into the regulatory mechanism of BtFae activity by oligomerization and a distinct substrate binding pocket adjacent to the active site
To Be Published
4YLM
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BU of 4ylm by Molmil
Structure of PvcB, an Fe, alpha-ketoglutarate dependent oxygenase from an isonitrile synthetic pathway
Descriptor: GLYCEROL, Pyoverdine biosynthesis protein PvcB
Authors:Zhu, J, Lippa, G.M, Gulick, A.M, Tipton, P.A.
Deposit date:2015-03-05
Release date:2015-04-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Examining Reaction Specificity in PvcB, a Source of Diversity in Isonitrile-Containing Natural Products.
Biochemistry, 54, 2015
3GB1
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BU of 3gb1 by Molmil
STRUCTURES OF B1 DOMAIN OF STREPTOCOCCAL PROTEIN G
Descriptor: PROTEIN (B1 DOMAIN OF STREPTOCOCCAL PROTEIN G)
Authors:Clore, G.M.
Deposit date:1999-05-02
Release date:1999-06-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Improving the Packing and Accuracy of NMR Structures with a Pseudopotential for the Radius of Gyration
J.Am.Chem.Soc., 121, 1999
1MH5
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BU of 1mh5 by Molmil
The Structure Of The Complex Of The Fab Fragment Of The Esterolytic Antibody MS6-164 and A Transition-State Analog
Descriptor: IMMUNOGLOBULIN MS6-164, N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE, SULFATE ION
Authors:Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W.
Deposit date:2002-08-19
Release date:2003-09-23
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity
J.Mol.Biol., 332, 2003
1MJ8
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BU of 1mj8 by Molmil
High Resolution Crystal Structure Of The Fab Fragment of The Esterolytic Antibody MS6-126
Descriptor: GLYCEROL, IMMUNOGLOBULIN MS6-126, PHOSPHATE ION
Authors:Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W.
Deposit date:2002-08-27
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity
J.Mol.Biol., 332, 2003
1LZT
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BU of 1lzt by Molmil
REFINEMENT OF TRICLINIC LYSOZYME
Descriptor: HEN EGG WHITE LYSOZYME
Authors:Hodsdon, J.M, Brown, G.M, Sieker, L.C, Jensen, L.H.
Deposit date:1985-04-01
Release date:1985-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Refinement of triclinic lysozyme: I. Fourier and least-squares methods.
Acta Crystallogr.,Sect.B, 46, 1990
5KMP
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BU of 5kmp by Molmil
The structure of G164E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Cook, G.M, Aragao, D, Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5KMR
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BU of 5kmr by Molmil
The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 3.0 angstrom resolution.
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Cook, G.M, Aragao, D, Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
1MJU
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BU of 1mju by Molmil
1.22 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12
Descriptor: GLYCEROL, IMMUNOGLOBULIN MS6-12
Authors:Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W.
Deposit date:2002-08-28
Release date:2003-09-23
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity
J.Mol.Biol., 332, 2003
5L87
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BU of 5l87 by Molmil
Targeting the PEX14-PEX5 interaction by small molecules provides novel therapeutic routes to treat trypanosomiases.
Descriptor: 1,2-ETHANEDIOL, 5-(1~{H}-indol-3-ylmethyl)-1-methyl-~{N}-(naphthalen-1-ylmethyl)-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridine-3-carboxamide, Peroxin 14
Authors:Dawidowski, M, Emmanouilidis, L, Sattler, M, Popowicz, G.M.
Deposit date:2016-06-07
Release date:2017-03-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:Inhibitors of PEX14 disrupt protein import into glycosomes and kill Trypanosoma parasites.
Science, 355, 2017
1MJ7
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BU of 1mj7 by Molmil
Crystal Structure Of The Complex Of The Fab fragment of Esterolytic Antibody MS5-393 and A Transition-State Analog
Descriptor: IMMUNOGLOBULIN MS5-393, N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE
Authors:Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W.
Deposit date:2002-08-27
Release date:2003-09-23
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity
J.Mol.Biol., 332, 2003
5KMS
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BU of 5kms by Molmil
The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 2.5 angstrom resolution.
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Cook, G.M, Aragao, D, Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017

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