The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 3.0 angstrom resolution.

Summary for 5KMR

Related5KMQ 5KMP 5KMS
DescriptorFAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... (4 entities in total)
Functional Keywordsrossmann fold, nadh dehydrogenase, oxidoreductase
Biological sourceCaldalkalibacillus thermarum TA2.A1
Total number of polymer chains4
Total molecular weight183420.43
Cook, G.M.,Aragao, D.,Nakatani, Y. (deposition date: 2016-06-27, release date: 2017-01-25)
Primary citation
Blaza, J.N.,Bridges, H.R.,Aragao, D.,Dunn, E.A.,Heikal, A.,Cook, G.M.,Nakatani, Y.,Hirst, J.
The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7:40165-40165, 2017
PubMed: 28067272 (PDB entries with the same primary citation)
DOI: 10.1038/srep40165
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.25250.8%1.8%0.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution