5KMS

The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 2.5 angstrom resolution.

Summary for 5KMS

Related5KMQ 5KMP 5KMR
DescriptorFAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... (4 entities in total)
Functional Keywordsrossmann fold, nadh dehydrogenase, oxidoreductase
Biological sourceCaldalkalibacillus thermarum TA2.A1
Total number of polymer chains4
Total molecular weight182093.58
Authors
Cook, G.M.,Aragao, D.,Nakatani, Y. (deposition date: 2016-06-27, release date: 2017-02-01)
Primary citation
Blaza, J.N.,Bridges, H.R.,Aragao, D.,Dunn, E.A.,Heikal, A.,Cook, G.M.,Nakatani, Y.,Hirst, J.
The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7:40165-40165, 2017
PubMed: 28067272 (PDB entries with the same primary citation)
DOI: 10.1038/srep40165
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.5 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.24520.3%2.1%3.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5kms
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Molmil generated image of 5kms
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Molmil generated image of 5kms
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More Biological unit images

Molmil generated image of 5kms
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Molmil generated image of 5kms
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Molmil generated image of 5kms
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5kms.pdb2.gz [123.47 KB])
Coordinate files for Biological unit (5kms.pdb1.gz [126.94 KB])