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5KMR

The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 3.0 angstrom resolution.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
A0016491molecular_functionoxidoreductase activity
A0019646biological_processaerobic electron transport chain
B0000166molecular_functionnucleotide binding
B0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
B0016491molecular_functionoxidoreductase activity
B0019646biological_processaerobic electron transport chain
C0000166molecular_functionnucleotide binding
C0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
C0016491molecular_functionoxidoreductase activity
C0019646biological_processaerobic electron transport chain
D0000166molecular_functionnucleotide binding
D0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
D0016491molecular_functionoxidoreductase activity
D0019646biological_processaerobic electron transport chain
Functional Information from PDB Data
site_idAC1
Number of Residues26
Detailsbinding site for residue FAD B 601
ChainResidue
BGLY10
BTHR46
BHIS49
BASP79
BVAL81
BLEU107
BGLY108
BILE126
BASN265
BILE267
BGLY298
BALA11
BASP299
BPRO314
BTHR315
BALA316
BGLN317
BALA319
BLYS376
BGLY12
BTYR13
BGLY14
BASN37
BLYS38
BTYR43
BTHR45

site_idAC2
Number of Residues28
Detailsbinding site for residue FAD A 601
ChainResidue
AGLY10
AGLY12
ATYR13
AGLY14
AASN37
ALYS38
ATYR43
ATHR45
ATHR46
AASP79
ATHR80
AVAL81
AGLY106
ALEU107
AGLY108
AILE126
AASN265
AILE267
AGLY298
AASP299
APRO314
ATHR315
AALA316
AGLN317
AALA319
ALYS376
ANAD602
AHOH705

site_idAC3
Number of Residues17
Detailsbinding site for residue NAD A 602
ChainResidue
AILE116
AGLY162
AGLY164
APHE165
ATHR166
AVAL197
AGLU198
AALA199
APRO205
AILE232
ATRP258
AGLY260
AGLY261
APRO313
APRO314
AVAL350
AFAD601

site_idAC4
Number of Residues22
Detailsbinding site for residue FAD C 601
ChainResidue
CGLY10
CGLY12
CTYR13
CGLY14
CASN37
CLYS38
CTYR43
CTHR45
CTHR46
CVAL81
CLEU107
CGLY108
CILE126
CILE267
CGLY298
CASP299
CPRO314
CTHR315
CALA316
CGLN317
CALA319
CNAD602

site_idAC5
Number of Residues17
Detailsbinding site for residue NAD C 602
ChainResidue
CALA199
CALA200
CPRO205
CILE232
CTHR259
CGLY260
CGLY261
CPRO313
CPRO314
CFAD601
CHOH701
CPHE114
CGLY162
CPHE165
CTHR166
CVAL197
CGLU198

site_idAC6
Number of Residues27
Detailsbinding site for residue FAD D 601
ChainResidue
DGLY10
DALA11
DGLY12
DTYR13
DGLY14
DASN37
DLYS38
DTYR43
DTHR45
DTHR46
DASP79
DVAL81
DGLY106
DLEU107
DGLY108
DILE126
DASN265
DILE267
DGLY298
DASP299
DPRO314
DTHR315
DALA316
DGLN317
DALA319
DLYS376
DNAD602

site_idAC7
Number of Residues20
Detailsbinding site for residue NAD D 602
ChainResidue
DPHE114
DILE116
DGLY162
DGLY164
DPHE165
DTHR166
DGLU169
DVAL197
DGLU198
DALA199
DPRO205
DPRO231
DILE232
DGLY260
DGLY261
DVAL262
DPRO313
DPRO314
DVAL350
DFAD601

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PDB entries from 2024-03-27

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