Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1718 results

4ONF
DownloadVisualize
BU of 4onf by Molmil
Fab fragment of 3D6 in complex with amyloid beta 1-7
Descriptor: 3D6 FAB ANTIBODY HEAVY CHAIN, 3D6 FAB ANTIBODY LIGHT CHAIN, Amyloid beta A4 protein
Authors:Feinberg, H, Saldanha, J.W, Diep, L, Goel, A, Widom, A, Veldman, G.M, Weis, W.I, Schenk, D, Basi, G.S.
Deposit date:2014-01-28
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure reveals conservation of amyloid-beta conformation recognized by 3D6 following humanization to bapineuzumab.
Alzheimers Res Ther, 6, 2014
6U3R
DownloadVisualize
BU of 6u3r by Molmil
Solution NMR structure of the DNAJB6b deltaST variant (Aligned on the J domain)
Descriptor: DnaJ homolog subfamily B member 6,DnaJ homolog subfamily B member 6
Authors:Karamanos, T.K, Clore, G.M.
Deposit date:2019-08-22
Release date:2019-10-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unraveling the structure and dynamics of the human DNAJB6b chaperone by NMR reveals insights into Hsp40-mediated proteostasis.
Proc.Natl.Acad.Sci.USA, 116, 2019
6U3S
DownloadVisualize
BU of 6u3s by Molmil
Solution NMR structure of the DNAJB6b deltaST variant (Aligned on the CTD domain)
Descriptor: DnaJ homolog subfamily B member 6
Authors:Karamanos, T.K, Clore, G.M.
Deposit date:2019-08-22
Release date:2019-10-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unraveling the structure and dynamics of the human DNAJB6b chaperone by NMR reveals insights into Hsp40-mediated proteostasis.
Proc.Natl.Acad.Sci.USA, 116, 2019
6UPV
DownloadVisualize
BU of 6upv by Molmil
Alpha-E-catenin ABD-F-actin complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Mei, L, Alushin, G.M.
Deposit date:2019-10-18
Release date:2020-09-30
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Molecular mechanism for direct actin force-sensing by alpha-catenin.
Elife, 9, 2020
6UPW
DownloadVisualize
BU of 6upw by Molmil
Metavinculin ABD-F-actin complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Mei, L, Alushin, G.M.
Deposit date:2019-10-18
Release date:2020-09-30
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular mechanism for direct actin force-sensing by alpha-catenin.
Elife, 9, 2020
6WAR
DownloadVisualize
BU of 6war by Molmil
Crystal structure of the MERS-CoV RBD bound by the neutralizing single-domain antibody MERS VHH-55
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein, nanobody MERS VHH-55
Authors:Wrapp, D, Torres, G.M, McLellan, J.S.
Deposit date:2020-03-25
Release date:2020-04-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural Basis for Potent Neutralization of Betacoronaviruses by Single-Domain Camelid Antibodies.
Cell, 181, 2020
6TA7
DownloadVisualize
BU of 6ta7 by Molmil
CRYSTAL STRUCTURE OF HUMAN G3BP1-NTF2 IN COMPLEX WITH HUMAN CAPRIN1-DERIVED SOLOMON MOTIF
Descriptor: CHLORIDE ION, Caprin-1, Ras GTPase-activating protein-binding protein 1, ...
Authors:Schulte, T, Achour, A, Panas, M.D, McInerney, G.M.
Deposit date:2019-10-29
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Caprin-1 binding to the critical stress granule protein G3BP1 is regulated by pH
Biorxiv, 2021
6TNA
DownloadVisualize
BU of 6tna by Molmil
CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT
Descriptor: MAGNESIUM ION, TRNAPHE
Authors:Sussman, J.L, Holbrook, S.R, Warrant, R.W, Church, G.M, Kim, S.-H.
Deposit date:1978-11-16
Release date:1979-01-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement.
J.Mol.Biol., 123, 1978
1GB1
DownloadVisualize
BU of 1gb1 by Molmil
A NOVEL, HIGHLY STABLE FOLD OF THE IMMUNOGLOBULIN BINDING DOMAIN OF STREPTOCOCCAL PROTEIN G
Descriptor: PROTEIN G
Authors:Gronenborn, A.M, Clore, G.M.
Deposit date:1991-05-15
Release date:1993-04-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G.
Science, 253, 1991
8IN8
DownloadVisualize
BU of 8in8 by Molmil
Cryo-EM structure of the target ssDNA-bound SIR2-APAZ/Ago-gRNA quaternary complex
Descriptor: DNA (5'-D(P*AP*AP*CP*GP*AP*CP*GP*TP*CP*TP*AP*AP*GP*AP*AP*AP*CP*CP*AP*TP*TP*AP*A)-3'), MAGNESIUM ION, Piwi domain protein, ...
Authors:Zhang, H, Li, Z, Yu, G.M, Li, X.Z, Wang, X.S.
Deposit date:2023-03-08
Release date:2023-07-05
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into mechanisms of Argonaute protein-associated NADase activation in bacterial immunity.
Cell Res., 33, 2023
8I88
DownloadVisualize
BU of 8i88 by Molmil
Cryo-EM structure of TIR-APAZ/Ago-gRNA complex
Descriptor: Piwi domain-containing protein, RNA (5'-R(P*GP*A)-3'), TIR domain-containing protein
Authors:Zhang, H, Li, Z, Yu, G.M, Li, X.Z, Wang, X.S.
Deposit date:2023-02-03
Release date:2023-07-05
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural insights into mechanisms of Argonaute protein-associated NADase activation in bacterial immunity.
Cell Res., 33, 2023
8I87
DownloadVisualize
BU of 8i87 by Molmil
Cryo-EM structure of TIR-APAZ/Ago-gRNA-DNA complex
Descriptor: DNA (5'-D(P*TP*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*A)-3'), MAGNESIUM ION, Piwi domain-containing protein, ...
Authors:Zhang, H, Deng, Z.Q, Yu, G.M, Li, X.Z, Wang, X.S.
Deposit date:2023-02-03
Release date:2023-07-19
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insights into mechanisms of Argonaute protein-associated NADase activation in bacterial immunity.
Cell Res., 33, 2023
3DAC
DownloadVisualize
BU of 3dac by Molmil
Structure of the human Mdmx protein bound to the p53 tumor suppressor transactivation domain
Descriptor: Cellular tumor antigen p53, Mdm4 protein
Authors:Popowicz, G.M, Czarna, A, Holak, T.A.
Deposit date:2008-05-29
Release date:2008-09-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the human Mdmx protein bound to the p53 tumor suppressor transactivation domain.
Cell Cycle, 7, 2008
3F8L
DownloadVisualize
BU of 3f8l by Molmil
Crystal Structure of the Effector Domain of PhnF from Mycobacterium smegmatis
Descriptor: GLYCEROL, HTH-type transcriptional repressor phnF, SULFATE ION
Authors:Busby, J.N, Gebhard, S, Cook, G.M, Baker, E.N, Lott, S.J, Money, V.A.
Deposit date:2008-11-12
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of PhnF, a GntR-family transcription regulator in Mycobacterium smegmatis
To be Published
3FDO
DownloadVisualize
BU of 3fdo by Molmil
Structure of human MDMX in complex with high affinity peptide
Descriptor: MAGNESIUM ION, Protein Mdm4, Synthetic high affinity peptide
Authors:Czarna, A.L, Popowicz, G.M, Holak, T.A.
Deposit date:2008-11-26
Release date:2008-12-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High affinity interaction of the p53 peptide-analogue with human Mdm2 and Mdmx.
Cell Cycle, 8, 2009
3FXV
DownloadVisualize
BU of 3fxv by Molmil
Identification of an N-oxide pyridine GW4064 analogue as a potent FXR agonist
Descriptor: 12-meric peptide from Nuclear receptor coactivator 1, 6-(4-{[3-(3,5-dichloropyridin-4-yl)-5-(1-methylethyl)isoxazol-4-yl]methoxy}-2-methylphenyl)-1-methyl-1H-indole-3-carbox ylic acid, NR1H4 protein
Authors:Feng, S, Yang, M, He, Y, Chen, L, Zhang, Z, Wang, Z, Hong, D, Richter, H, Benson, G.M, Bleicher, K, Grether, U, Martin, R, Plancher, J.-M, Kuhn, B, Rudolph, M.G.
Deposit date:2009-01-21
Release date:2009-04-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Identification of an N-oxide pyridine GW4064 analog as a potent FXR agonist
Bioorg.Med.Chem.Lett., 19, 2009
3G03
DownloadVisualize
BU of 3g03 by Molmil
Structure of human MDM2 in complex with high affinity peptide
Descriptor: E3 ubiquitin-protein ligase Mdm2, High affinity synthetic peptide
Authors:Czarna, A.L, Popowicz, G.M, Holak, T.A.
Deposit date:2009-01-27
Release date:2009-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High affinity interaction of the p53 peptide-analogue with human Mdm2 and Mdmx.
Cell Cycle, 8, 2009
3CL1
DownloadVisualize
BU of 3cl1 by Molmil
M. loti cyclic-nucleotide binding domain, cyclic-GMP bound
Descriptor: CHLORIDE ION, CYCLIC GUANOSINE MONOPHOSPHATE, Mll3241 protein, ...
Authors:Clayton, G.M, Alteiri, S.L, Thomas, L.R, Morais-Cabral, J.H.
Deposit date:2008-03-18
Release date:2008-08-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Energetic Analysis of Activation by a Cyclic Nucleotide Binding Domain.
J.Mol.Biol., 381, 2008
3DU1
DownloadVisualize
BU of 3du1 by Molmil
The 2.0 Angstrom Resolution Crystal Structure of HetL, a Pentapeptide Repeat Protein involved in Heterocyst Differentiation Regulation from the Cyanobacterium Nostoc sp. Strain PCC 7120
Descriptor: All3740 protein
Authors:Kennedy, M.A, Ni, S, Sheldrick, G.M.
Deposit date:2008-07-16
Release date:2008-11-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2A resolution crystal structure of HetL, a pentapeptide repeat protein involved in regulation of heterocyst differentiation in the cyanobacterium Nostoc sp. strain PCC 7120
J.Struct.Biol., 165, 2008
3DAB
DownloadVisualize
BU of 3dab by Molmil
Structure of the human Mdmx protein bound to the p53 tumor suppressor transactivation domain
Descriptor: Cellular tumor antigen p53, Mdm4 protein
Authors:Popowicz, G.M, Czarna, A, Holak, T.A.
Deposit date:2008-05-29
Release date:2008-09-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the human Mdmx protein bound to the p53 tumor suppressor transactivation domain.
Cell Cycle, 7, 2008
3F8M
DownloadVisualize
BU of 3f8m by Molmil
Crystal Structure of PhnF from Mycobacterium smegmatis
Descriptor: GLYCEROL, GntR-family protein transcriptional regulator
Authors:Busby, J.N, Gebhard, S, Cook, G.M, Lott, S.J, Baker, E.N, Money, V.A.
Deposit date:2008-11-12
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of PhnF, a GntR-family transcription regulator in Mycobacterium smegmatis
To be Published
3GO3
DownloadVisualize
BU of 3go3 by Molmil
Interactions of an echinomycin-DNA complex with manganese(II) ions
Descriptor: 2-CARBOXYQUINOXALINE, 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3', DI(HYDROXYETHYL)ETHER, ...
Authors:Pfoh, R, Cuesta-Seijo, J.A, Sheldrick, G.M.
Deposit date:2009-03-18
Release date:2009-03-31
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Interaction of an Echinomycin-DNA Complex with Manganese Ion
Acta Crystallogr.,Sect.F, 65, 2009
3HBR
DownloadVisualize
BU of 3hbr by Molmil
Crystal structure of OXA-48 beta-lactamase
Descriptor: 1,2-ETHANEDIOL, OXA-48
Authors:Calderone, V, Mangani, S, Benvenuti, M, Rossolini, G.M, Docquier, J.D.
Deposit date:2009-05-05
Release date:2009-06-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the OXA-48 beta-lactamase reveals mechanistic diversity among class D carbapenemases.
Chem.Biol., 16, 2009
3GWH
DownloadVisualize
BU of 3gwh by Molmil
Crystallographic Ab Initio protein solution far below atomic resolution
Descriptor: PHOSPHATE ION, Transcriptional antiterminator (BglG family)
Authors:Rodriguez, D.D, Grosse, C, Himmel, S, Gonzalez, C, Becker, S, Sheldrick, G.M, Uson, I.
Deposit date:2009-04-01
Release date:2010-04-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystallographic ab initio protein structure solution below atomic resolution
Nat.Methods, 6, 2009
3EE6
DownloadVisualize
BU of 3ee6 by Molmil
Crystal Structure Analysis of Tripeptidyl peptidase -I
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Pal, A, Kraetzner, R, Grapp, M, Gruene, T, Schreiber, K, Granborg, M, Urlaub, H, Asif, A.R, Becker, S, Gartner, J, Sheldrick, G.M, Steinfeld, R.
Deposit date:2008-09-04
Release date:2008-11-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of tripeptidyl-peptidase I provides insight into the molecular basis of late infantile neuronal ceroid lipofuscinosis
J.Biol.Chem., 284, 2009

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon