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PDB: 35 results

4URT
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BU of 4urt by Molmil
The crystal structure of a fragment of netrin-1 in complex with FN5- FN6 of DCC
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Finci, L.I, Krueger, N, Sun, X, Zhang, J, Chegkazi, M, Wu, Y, Schenk, G, Mertens, H.D.T, Svergun, D.I, Zhang, Y, Wang, J.-h, Meijers, R.
Deposit date:2014-07-02
Release date:2014-09-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Crystal Structure of Netrin-1 in Complex with Dcc Reveals the Bi-Functionality of Netrin-1 as a Guidance Cue
Neuron, 83, 2014
1QWA
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BU of 1qwa by Molmil
NMR structure of 5'-r(GGAUGCCUCCCGAGUGCAUCC): an RNA hairpin derived from the mouse 5'ETS that binds nucleolin RBD12.
Descriptor: 18S ribosomal RNA, 5'ETS
Authors:Finger, L.D, Trantirek, L, Johansson, C, Feigon, J.
Deposit date:2003-09-01
Release date:2003-11-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Strucutres of Stem-loop RNAs that Bind to the Two N-terminal RNA Binding Domains of Nucleolin
Nucleic Acids Res., 31, 2003
1QWB
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BU of 1qwb by Molmil
NMR structure of 5'-r(GGACACGAAAUCCCGAAGUAGUGUCC)-3' : an RNA hairpin containing the in vitro selected consensus sequence for nucleolin RBD12
Descriptor: sNRE26
Authors:Finger, L.D, Trantirek, L, Johansson, C, Feigon, J.
Deposit date:2003-09-01
Release date:2003-11-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structures of Stem-loop RNAs that Bind the Two N-terminal RNA-binding Domains of Nucleolin
Nucleic Acids Res., 31, 2003
8U1M
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BU of 8u1m by Molmil
Cryo-EM structure of the HSP90 dimer (NTD-MD) in the semi-open state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 83, MAGNESIUM ION
Authors:Finci, L.I, Simanshu, D.K.
Deposit date:2023-09-01
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural dynamics of RAF1-HSP90-CDC37 and HSP90 complexes reveal asymmetric client interactions and key structural elements.
Commun Biol, 7, 2024
8U1N
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BU of 8u1n by Molmil
Cryo-EM structure of the cross-linked HSP90 dimer (NTD-MD) in the semi-open state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 83, MAGNESIUM ION
Authors:Finci, L.I, Simanshu, D.K.
Deposit date:2023-09-01
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural dynamics of RAF1-HSP90-CDC37 and HSP90 complexes reveal asymmetric client interactions and key structural elements.
Commun Biol, 7, 2024
5WH9
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BU of 5wh9 by Molmil
Structure of BH1999 gentisyl-coenzyme A thioesterase
Descriptor: 4-hydroxybenzoyl-CoA thioesterase
Authors:Finci, L.I, Allen, K.N.
Deposit date:2017-07-16
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of BH1999 gentisyl-coenzyme A thioesterase
To Be Published
8U1L
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BU of 8u1l by Molmil
Cryo-EM structure of the RAF1-HSP90-CDC37 complex in the closed state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 83, Hsp90 co-chaperone Cdc37, ...
Authors:Finci, L.I, Simanshu, D.K.
Deposit date:2023-09-01
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural dynamics of RAF1-HSP90-CDC37 and HSP90 complexes reveal asymmetric client interactions and key structural elements.
Commun Biol, 7, 2024
5ZYA
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BU of 5zya by Molmil
SF3b spliceosomal complex bound to E7107
Descriptor: PHD finger-like domain-containing protein 5A, POTASSIUM ION, Splicing factor 3B subunit 1, ...
Authors:Finci, L.I, Larsen, N.A.
Deposit date:2018-05-23
Release date:2018-06-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.95 Å)
Cite:The cryo-EM structure of the SF3b spliceosome complex bound to a splicing modulator reveals a pre-mRNA substrate competitive mechanism of action
Genes Dev., 32, 2018
3FM9
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BU of 3fm9 by Molmil
Analysis of the Structural Determinants Underlying Discrimination between Substrate and Solvent in beta-Phosphoglucomutase Catalysis
Descriptor: Beta-phosphoglucomutase, MAGNESIUM ION
Authors:Finci, L, Lahiri, S, Peisach, E, Allen, K.N.
Deposit date:2008-12-19
Release date:2009-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Analysis of the structural determinants underlying discrimination between substrate and solvent in beta-phosphoglucomutase catalysis.
Biochemistry, 48, 2009
6STR
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BU of 6str by Molmil
Three dimensional structure of the giant reed (Arundodonax) lectin (ADL) complex with N,N'-Diacetylchitobiose; 60 seconds soaking
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Arundo donax Lectin (ADL), GLYCEROL
Authors:Perduca, M, Monaco, H.L, Bovi, M, Destefanis, L, Nadali, D, Fin, L, Carrizo, M.E.
Deposit date:2019-09-11
Release date:2021-07-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional structure and properties of the giant reed (Arundo donax) lectin (ADL).
Glycobiology, 2021
6STQ
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BU of 6stq by Molmil
Three dimensional structure of the giant reed (Arundodonax) lectin (ADL) complex with N,N'-Diacetylchitobiose; 30 seconds soaking
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Arundo donax Lectin (ADL), GLYCEROL
Authors:Perduca, M, Monaco, H.L, Bovi, M, Destefanis, L, Nadali, D, Fin, L, Carrizo, M.E.
Deposit date:2019-09-11
Release date:2021-07-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Three-dimensional structure and properties of the giant reed (Arundo donax) lectin (ADL).
Glycobiology, 2021
6STN
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BU of 6stn by Molmil
Three dimensional structure of the giant reed (Arundodonax) lectin (ADL) complex with N-Acetyl glucosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Arundo donax Lectin (ADL), GLYCEROL
Authors:Perduca, M, Monaco, H.L, Bovi, M, Destefanis, L, Nadali, D, Fin, L, Carrizo, M.E.
Deposit date:2019-09-11
Release date:2021-07-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Three-dimensional structure and properties of the giant reed (Arundo donax) lectin (ADL).
Glycobiology, 2021
6STM
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BU of 6stm by Molmil
Three dimensional structure of the giant reed (Arundodonax) lectin (ADL)
Descriptor: Arundo donax Lectin (ADL), GLYCEROL
Authors:Perduca, M, Monaco, H.L, Bovi, M, Destefanis, L, Nadali, D, Fin, L, Carrizo, M.E.
Deposit date:2019-09-11
Release date:2021-07-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Three-dimensional structure and properties of the giant reed (Arundo donax) lectin (ADL).
Glycobiology, 2021
6STP
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BU of 6stp by Molmil
Three dimensional structure of the giant reed (Arundodonax) lectin (ADL) complex with sialic acid
Descriptor: Arundo donax Lectin (ADL), GLYCEROL, N-acetyl-alpha-neuraminic acid
Authors:Perduca, M, Monaco, H.L, Bovi, M, Destefanis, L, Nadali, D, Fin, L, Carrizo, M.E.
Deposit date:2019-09-11
Release date:2021-07-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Three-dimensional structure and properties of the giant reed (Arundo donax) lectin (ADL).
Glycobiology, 2021
6STO
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BU of 6sto by Molmil
Three dimensional structure of the giant reed (Arundodonax) lectin (ADL) complex with N-Acetyl lactosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Arundo donax Lectin (ADL), GLYCEROL, ...
Authors:Perduca, M, Monaco, H.L, Bovi, M, Destefanis, L, Nadali, D, Fin, L, Carrizo, M.E.
Deposit date:2019-09-11
Release date:2021-07-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Three-dimensional structure and properties of the giant reed (Arundo donax) lectin (ADL).
Glycobiology, 2021
6WXY
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BU of 6wxy by Molmil
crystal structure of cA6-bound Card1
Descriptor: Card1, cA6
Authors:Rostol, J, Xie, W, Patel, D.J, Marraffini, L.
Deposit date:2020-05-12
Release date:2020-12-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Card1 nuclease provides defence during type III CRISPR immunity.
Nature, 590, 2021
6WXW
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BU of 6wxw by Molmil
crystal structure of apo Card1
Descriptor: Card1
Authors:Rostol, J, Xie, W, Patel, D.J, Marraffini, L.
Deposit date:2020-05-12
Release date:2020-12-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:The Card1 nuclease provides defence during type III CRISPR immunity.
Nature, 590, 2021
6WXX
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BU of 6wxx by Molmil
crystal structure of cA4-activated Card1
Descriptor: Card1, MANGANESE (II) ION, cA4
Authors:Rostol, J, Xie, W, Patel, D.J, Marraffini, L.
Deposit date:2020-05-12
Release date:2020-12-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Card1 nuclease provides defence during type III CRISPR immunity.
Nature, 590, 2021
6XL1
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BU of 6xl1 by Molmil
crystal structure of cA4-activated Card1(D294N)
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Card1, MANGANESE (II) ION, ...
Authors:Rostol, J, Xie, W, Patel, D.J, Marraffini, L.
Deposit date:2020-06-27
Release date:2020-12-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Card1 nuclease provides defence during type III CRISPR immunity.
Nature, 590, 2021
1IE2
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BU of 1ie2 by Molmil
Solution Structure of an In Vitro Selected RNA which is Sequence Specifically Recognized by RBD12 of Hamster Nucleolin.sNRE (anti)
Descriptor: 5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*UP*CP*CP*CP*GP*AP*AP*GP*UP*AP*GP*GP*CP*C)-3'
Authors:Bouvet, P, Allain, F.H.-T, Finger, L.D, Dieckmann, T, Feigon, J.
Deposit date:2001-04-05
Release date:2001-06-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Recognition of pre-formed and flexible elements of an RNA stem-loop by nucleolin.
J.Mol.Biol., 309, 2001
1IE1
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BU of 1ie1 by Molmil
NMR Solution Structure of an In Vitro Selected RNA which is Sequence Specifically Recognized by Hamster Nucleolin RBD12.
Descriptor: 5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*UP*CP*CP*CP*GP*AP*AP*GP*UP*AP*GP*GP*CP*C)-3'
Authors:Bouvet, P, Allain, F.H.-T, Finger, L.D, Dieckmann, T, Feigon, J.
Deposit date:2001-04-05
Release date:2001-06-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Recognition of pre-formed and flexible elements of an RNA stem-loop by nucleolin.
J.Mol.Biol., 309, 2001
1IX2
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BU of 1ix2 by Molmil
Crystal Structure of Selenomethionine PcoC, a Copper Resistance Protein from Escherichia coli
Descriptor: PcoC copper resistance protein
Authors:Wernimont, A.K, Huffman, D.L, Finney, L.A, Demeler, B, O'Halloran, T.V, Rosenzweig, A.C.
Deposit date:2002-06-10
Release date:2002-11-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure and dimerization equilibria of PcoC, a methionine-rich copper resistance protein from Escherichia coli
J.BIOL.INORG.CHEM., 8, 2003
1NA2
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BU of 1na2 by Molmil
Solution structure of the p2b hairpin from human telomerase RNA
Descriptor: telomerase RNA p2b hairpin
Authors:Theimer, C.A, Finger, L.D, Trantirek, L, Feigon, J.
Deposit date:2002-11-26
Release date:2003-01-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Mutations linked to dyskeratosis congenita cause changes in the structural equilibrium in telomerase RNA
Proc.Natl.Acad.Sci.USA, 100, 2003
6VRB
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BU of 6vrb by Molmil
Cryo-EM structure of AcrVIA1-Cas13(crRNA) complex
Descriptor: AcrVIA1, CRISPR-associated endoribonuclease Cas13a, RNA (52-MER)
Authors:Jia, N, Meeske, A.J, Marraffini, L.A, Patel, D.J.
Deposit date:2020-02-07
Release date:2020-06-10
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A phage-encoded anti-CRISPR enables complete evasion of type VI-A CRISPR-Cas immunity.
Science, 369, 2020
6VRC
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BU of 6vrc by Molmil
Cryo-EM structure of Cas13(crRNA)
Descriptor: CRISPR-associated endoribonuclease Cas13a, RNA (51-MER)
Authors:Jia, N, Meeske, A.J, Marraffini, L.A, Patel, D.J.
Deposit date:2020-02-07
Release date:2020-06-10
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A phage-encoded anti-CRISPR enables complete evasion of type VI-A CRISPR-Cas immunity.
Science, 369, 2020

 

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