Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 40736 件

5GRT
DownloadVisualize
BU of 5grt by Molmil
HUMAN GLUTATHIONE REDUCTASE A34E, R37W MUTANT, GLUTATHIONYLSPERMIDINE COMPLEX
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE REDUCTASE, GLUTATHIONYLSPERMIDINE DISULFIDE
著者Stoll, V.S, Simpson, S.J, Krauth-Siegel, R.L, Walsh, C.T, Pai, E.F.
登録日1997-02-12
公開日1997-08-12
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Glutathione reductase turned into trypanothione reductase: structural analysis of an engineered change in substrate specificity.
Biochemistry, 36, 1997
4YMD
DownloadVisualize
BU of 4ymd by Molmil
CL-K1 trimer bound to man(alpha1-2)man
分子名称: CALCIUM ION, Collectin-11, GLYCEROL, ...
著者Wallis, R, Venkatraman Girija, U, Gingras, A.R, Moody, P.C.E, Marshall, J.E.
登録日2015-03-06
公開日2015-04-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome.
Bmc Biol., 13, 2015
8E1G
DownloadVisualize
BU of 8e1g by Molmil
SARS-CoV-2 RBD in complex with Omicron-neutralizing antibody 2A10
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2A10 Fab, heavy chain, ...
著者Wasserman, H, Hastie, K.M, Buck, T.K, Saphire, E.O.
登録日2022-08-10
公開日2023-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Potent Omicron-neutralizing antibodies isolated from a patient vaccinated 6 months before Omicron emergence.
Cell Rep, 42, 2023
8EF7
DownloadVisualize
BU of 8ef7 by Molmil
CryoEM of the soluble OPA1 dimer from the apo helical assembly on a lipid membrane
分子名称: Dynamin-like 120 kDa protein, form S1
著者Nyenhuis, S.B, Wu, X, Stanton, A.E, Strub, M.P, Yim, Y.I, Canagarajah, B, Hinshaw, J.E.
登録日2022-09-08
公開日2023-06-28
最終更新日2023-09-13
実験手法ELECTRON MICROSCOPY (9.68 Å)
主引用文献OPA1 helical structures give perspective to mitochondrial dysfunction.
Nature, 620, 2023
7RYE
DownloadVisualize
BU of 7rye by Molmil
Cryo-EM structure of the needle filament-tip complex of the Salmonella type III secretion injectisome
分子名称: Cell invasion protein SipD, Protein PrgI
著者Guo, E.Z, Galan, J.E.
登録日2021-08-25
公開日2021-11-10
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Cryo-EM structure of the needle filament tip complex of the Salmonella type III secretion injectisome.
Proc.Natl.Acad.Sci.USA, 118, 2021
1Y34
DownloadVisualize
BU of 1y34 by Molmil
Crystal structure of the complex of subtilisin BPN' with chymotrypsin inhibitor 2 E60A mutant
分子名称: CALCIUM ION, CITRIC ACID, POLYETHYLENE GLYCOL (N=34), ...
著者Radisky, E.S, Lu, C.J, Kwan, G, Koshland Jr, D.E.
登録日2004-11-23
公開日2005-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Role of the intramolecular hydrogen bond network in the inhibitory power of chymotrypsin inhibitor 2
Biochemistry, 44, 2005
6Q7I
DownloadVisualize
BU of 6q7i by Molmil
GH3 exo-beta-xylosidase (XlnD)
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Davies, G.J, Rowland, R.J, Wu, L, Moroz, O, Blagova, E.
登録日2018-12-13
公開日2019-06-05
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Dynamic and Functional Profiling of Xylan-Degrading Enzymes inAspergillusSecretomes Using Activity-Based Probes.
Acs Cent.Sci., 5, 2019
5JNC
DownloadVisualize
BU of 5jnc by Molmil
Crystal structure for the complex of human carbonic anhydrase IV and 4-aminomethylbenzene sulfonamide
分子名称: 4-(aminomethyl)benzene-1-sulfonamide, ACETATE ION, Carbonic anhydrase 4, ...
著者Chen, Z, Waheed, A, Di Cera, E, Sly, W.S.
登録日2016-04-29
公開日2017-05-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Intrinsic thermodynamics of high affinity inhibitor binding to recombinant human carbonic anhydrase IV.
Eur. Biophys. J., 47, 2018
6BAO
DownloadVisualize
BU of 6bao by Molmil
Stigmatella aurantiaca phytochrome photosensory core module, wild type
分子名称: 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Photoreceptor-histidine kinase BphP
著者Schmidt, M, Stojkovic, E.
登録日2017-10-14
公開日2018-09-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome.
IUCrJ, 5, 2018
8AYX
DownloadVisualize
BU of 8ayx by Molmil
Poliovirus type 3 (strain Saukett) stabilised virus-like particle (PV3 SC8) in complex with GSH and GPP3
分子名称: 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE, Capsid protein, VP0, ...
著者Bahar, M.W, Fry, E.E, Stuart, D.I.
登録日2022-09-04
公開日2022-12-07
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献A conserved glutathione binding site in poliovirus is a target for antivirals and vaccine stabilisation.
Commun Biol, 5, 2022
8DV1
DownloadVisualize
BU of 8dv1 by Molmil
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Immunoglobulin gamma-1 heavy chain fusion,Immunoglobulin gamma-1 heavy chain, Spike glycoprotein
著者QCRG Structural Biology Consortium, Remesh, S.G, Merz, G.E, Brilot, A.F, Chio, U, Verba, K.A.
登録日2022-07-27
公開日2022-08-31
最終更新日2023-03-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps.
Structure, 31, 2023
8DV2
DownloadVisualize
BU of 8dv2 by Molmil
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Immunoglobulin gamma-1 heavy chain fusion, Spike glycoprotein
著者QCRG Structural Biology Consortium, Remesh, S.G, Merz, G.E, Brilot, A.F, Chio, U, Verba, K.A.
登録日2022-07-27
公開日2022-08-31
最終更新日2023-03-15
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps.
Structure, 31, 2023
8VB1
DownloadVisualize
BU of 8vb1 by Molmil
Crystal structure of HIV-1 protease with GS-9770
分子名称: (2S)-2-{(3M)-4-chloro-3-[1-(difluoromethyl)-1H-1,2,4-triazol-5-yl]phenyl}-2-[(2E,4R)-4-[4-(2-cyclopropyl-2H-1,2,3-triazol-4-yl)phenyl]-2-imino-5-oxo-4-(3,3,3-trifluoro-2,2-dimethylpropyl)imidazolidin-1-yl]ethyl [1-(difluoromethyl)cyclopropyl]carbamate, HIV-1 protease
著者Lansdon, E.B.
登録日2023-12-11
公開日2024-03-06
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Preclinical characterization of a non-peptidomimetic HIV protease inhibitor with improved metabolic stability.
Antimicrob.Agents Chemother., 68, 2024
5JNA
DownloadVisualize
BU of 5jna by Molmil
Crystal structure for the complex of human carbonic anhydrase IV and topiramate
分子名称: ACETATE ION, Carbonic anhydrase 4, GLYCEROL, ...
著者Chen, Z, Waheed, A, Di Cera, E, Sly, W.S.
登録日2016-04-29
公開日2017-05-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Intrinsic thermodynamics of high affinity inhibitor binding to recombinant human carbonic anhydrase IV.
Eur. Biophys. J., 47, 2018
4YBI
DownloadVisualize
BU of 4ybi by Molmil
Crystal structure of BACE with amino thiazine inhibitor LY2811376
分子名称: (4S)-4-[2,4-difluoro-5-(pyrimidin-5-yl)phenyl]-4-methyl-5,6-dihydro-4H-1,3-thiazin-2-amine, Beta-secretase 1, GLYCEROL
著者Timm, D.E.
登録日2015-02-18
公開日2015-04-01
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Robust central reduction of amyloid-beta in humans with an orally available, non-peptidic beta-secretase inhibitor.
J.Neurosci., 31, 2011
1URA
DownloadVisualize
BU of 1ura by Molmil
ALKALINE PHOSPHATASE (D51ZN)
分子名称: ALKALINE PHOSPHATASE, PHOSPHATE ION, ZINC ION
著者Tibbitts, T.T, Murphy, J.E, Kantrowitz, E.R.
登録日1996-02-03
公開日1996-07-11
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
J.Mol.Biol., 257, 1996
5LWQ
DownloadVisualize
BU of 5lwq by Molmil
CeuE (H227L variant) a periplasmic protein from Campylobacter jejuni
分子名称: BROMIDE ION, Enterochelin uptake periplasmic binding protein, SODIUM ION
著者Wilde, E.J, Blagova, E, Hughes, A, Raines, D.J, Moroz, O.V, Turkenburg, J.P, Duhme-Klair, A.-K, Wilson, K.S.
登録日2016-09-19
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Interactions of the periplasmic binding protein CeuE with Fe(III) n-LICAM(4-) siderophore analogues of varied linker length.
Sci Rep, 7, 2017
6CWT
DownloadVisualize
BU of 6cwt by Molmil
Hepatitis B core-antigen in complex with Fab e21
分子名称: Capsid protein, Fab e21 heavy chain, Fab e21 light chain
著者Eren, E, Steven, A.C, Wingfield, P.T.
登録日2018-03-30
公開日2018-08-29
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.151 Å)
主引用文献Structures of Hepatitis B Virus Core- and e-Antigen Immune Complexes Suggest Multi-point Inhibition.
Structure, 26, 2018
8QTD
DownloadVisualize
BU of 8qtd by Molmil
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
分子名称: Spike glycoprotein,Fibritin, XBB-7 fab heavy chain, XBB-7 fab light chain
著者Ren, J, Duyvesteyn, H.M.E, Stuart, D.I.
登録日2023-10-12
公開日2024-05-08
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 5, 2024
7TTJ
DownloadVisualize
BU of 7ttj by Molmil
Stable-5-LOX elongated Ha2
分子名称: Arachidonate 5-lipoxygenase, FE (II) ION
著者Gilbert, N.C, Newcomer, M.E.
登録日2022-02-01
公開日2022-08-31
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Helical remodeling augments 5-lipoxygenase activity in the synthesis of proinflammatory mediators.
J.Biol.Chem., 298, 2022
6QK4
DownloadVisualize
BU of 6qk4 by Molmil
Lytic transglycosylase, LtgG, of Burkholderia pseudomallei.
分子名称: Membrane-bound lytic murein transglycosylase A
著者Jenkins, C.H, Wallis, R, Allcock, N, Barnes, K.B, Richards, M.I, Auty, J.M, Galyov, E.E, Harding, S.V, Mukamolova, G.V.
登録日2019-01-28
公開日2019-08-14
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献The lytic transglycosylase, LtgG, controls cell morphology and virulence in Burkholderia pseudomallei.
Sci Rep, 9, 2019
1URB
DownloadVisualize
BU of 1urb by Molmil
ALKALINE PHOSPHATASE (N51MG)
分子名称: ALKALINE PHOSPHATASE, MAGNESIUM ION, PHOSPHATE ION, ...
著者Tibbitts, T.T, Murphy, J.E, Kantrowitz, E.R.
登録日1996-02-03
公開日1996-07-11
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
J.Mol.Biol., 257, 1996
8R8K
DownloadVisualize
BU of 8r8k by Molmil
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
分子名称: Spike glycoprotein, XBB-4 Fab Heavy chain, XBB-4 Fab Light chain
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
登録日2023-11-29
公開日2024-05-08
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.41 Å)
主引用文献A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity.
Cell Rep Med, 5, 2024
8V4U
DownloadVisualize
BU of 8v4u by Molmil
Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor
分子名称: 3C-like proteinase nsp5, N-(methoxycarbonyl)-3-methyl-L-valyl-(4R)-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-(trifluoromethyl)-L-prolinamide
著者Greasley, S.E, Ferre, R.A, Liu, W.
登録日2023-11-29
公開日2024-05-15
実験手法X-RAY DIFFRACTION (1.819 Å)
主引用文献A Second-Generation Oral SARS-CoV-2 Main Protease Inhibitor Clinical Candidate for the Treatment of COVID-19.
J.Med.Chem., 2024
5KJ0
DownloadVisualize
BU of 5kj0 by Molmil
CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH DB-1-264-2
分子名称: 1,2-ETHANEDIOL, 4-[[(7~{R})-8-cyclopentyl-7-ethyl-5-methyl-6-oxidanylidene-7~{H}-pteridin-2-yl]-methyl-amino]-3-methoxy-~{N}-(1-methylpiperidin-4-yl)benzamide, Bromodomain-containing protein 4
著者Zhu, J.-Y, Ember, S.W, Schonbrunn, E.
登録日2016-06-17
公開日2017-08-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Assessment of Bromodomain Target Engagement by a Series of BI2536 Analogues with Miniaturized BET-BRET.
ChemMedChem, 11, 2016

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon