Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 40926 results

3IAR
DownloadVisualize
BU of 3iar by Molmil
The crystal structure of human adenosine deaminase
Descriptor: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, Adenosine deaminase, GLYCEROL, ...
Authors:Ugochukwu, E, Zhang, Y, Hapka, E, Yue, W.W, Bray, J.E, Muniz, J, Burgess-Brown, N, Chaikuad, A, von Delft, F, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A, Kavanagh, K.L, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2009-07-14
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:The crystal structure of human adenosine deaminase
To be Published
8G1B
DownloadVisualize
BU of 8g1b by Molmil
Crystal structure of polyreactive 2G02 human Fab
Descriptor: The heavy chain of human 2G02 Fab fragment, The light chain of human 2G02 Fab fragment
Authors:Borowska, M.T, Adams, E.J.
Deposit date:2023-02-01
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Biochemical and biophysical characterization of natural polyreactivity in antibodies.
Cell Rep, 42, 2023
5FZN
DownloadVisualize
BU of 5fzn by Molmil
Structure of the Keap1 Kelch domain in complex with a small molecule inhibitor.
Descriptor: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1, SULFATE ION, benzenesulfonamide
Authors:Davies, T.G, Wixted, W.E, Coyle, J.E, Griffiths-Jones, C, Hearn, K, McMenamin, R, Norton, D, Rich, S.J, Richardson, C, Saxty, G, Willems, H.M.G, Woolford, A.J, Cottom, J.E, Kou, J, Yonchuk, J.G, Feldser, H.G, Sanchez, Y, Foley, J.P, Bolognese, B.J, Logan, G, Podolin, P.L, Yan, H, Callahan, J.F, Heightman, T.D, Kerns, J.K.
Deposit date:2016-03-15
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Mono-Acidic Inhibitors of the Kelch-Like Ech-Associated Protein 1 : Nuclear Factor Erythroid 2-Related Factor 2 (Keap1:Nrf2) Protein-Protein Interaction with High Cell Potency Identified by Fragment-Based Discovery.
J.Med.Chem., 59, 2016
6VAV
DownloadVisualize
BU of 6vav by Molmil
Peanut lectin complexed with divalent N-beta-D-galactopyranosyl-L-succinamoyl derivative (diNGS)
Descriptor: CALCIUM ION, Galactose-binding lectin, MANGANESE (II) ION, ...
Authors:Otero, L.H, Primo, E.D, Cagnoni, A.J, Klinke, S, Goldbaum, F.A, Uhrig, M.L.
Deposit date:2019-12-18
Release date:2020-10-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of peanut lectin in the presence of synthetic beta-N- and beta-S-galactosides disclose evidence for the recognition of different glycomimetic ligands.
Acta Crystallogr D Struct Biol, 76, 2020
7BH2
DownloadVisualize
BU of 7bh2 by Molmil
Cryo-EM Structure of KdpFABC in E2Pi state with BeF3 and K+
Descriptor: (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Sweet, M.E, Larsen, C, Pedersen, B.P, Stokes, D.L.
Deposit date:2021-01-09
Release date:2021-01-27
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for potassium transport in prokaryotes by KdpFABC.
Proc.Natl.Acad.Sci.USA, 118, 2021
8FWF
DownloadVisualize
BU of 8fwf by Molmil
Crystal structure of Apo form Fab235
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Tan, K, Kim, M, Reinherz, E.L.
Deposit date:2023-01-21
Release date:2023-10-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Inadequate structural constraint on Fab approach rather than paratope elicitation limits HIV-1 MPER vaccine utility.
Nat Commun, 14, 2023
2INS
DownloadVisualize
BU of 2ins by Molmil
THE STRUCTURE OF DES-PHE B1 BOVINE INSULIN
Descriptor: DES-PHE B1 INSULIN (CHAIN A), DES-PHE B1 INSULIN (CHAIN B), ZINC ION
Authors:Smith, G.D, Duax, W.L, Dodson, E.J, Dodson, G.G, Degraaf, R.A.G, Reynolds, C.D.
Deposit date:1982-05-10
Release date:1982-08-05
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Structure of Des-Phe B1 Bovine Insulin
Acta Crystallogr.,Sect.B, 38, 1982
8FXJ
DownloadVisualize
BU of 8fxj by Molmil
Crystal structure of Fab460
Descriptor: ACETATE ION, CHLORIDE ION, Fab460, ...
Authors:Tan, K, Kim, M, Reinherz, E.L.
Deposit date:2023-01-24
Release date:2023-10-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inadequate structural constraint on Fab approach rather than paratope elicitation limits HIV-1 MPER vaccine utility.
Nat Commun, 14, 2023
7ZKI
DownloadVisualize
BU of 7zki by Molmil
Cryo-EM structure of aIF1A:aIF5B:Met-tRNAiMet complex from a Pyrococcus abyssi 30S initiation complex
Descriptor: MAGNESIUM ION, METHIONINE, Met-tRNAiMet, ...
Authors:Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R.
Deposit date:2022-04-13
Release date:2022-07-20
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Role of aIF5B in archaeal translation initiation.
Nucleic Acids Res., 50, 2022
8F9E
DownloadVisualize
BU of 8f9e by Molmil
Crystal structure of Ky15.2 Fab in complex with circumsporozoite protein KQPA peptide
Descriptor: Circumsporozoite protein KQPA peptide, Ky15.2 Antibody, heavy chain, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2022-11-23
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
4ZZY
DownloadVisualize
BU of 4zzy by Molmil
Structure of human PARP2 catalytic domain bound to an isoindolinone inhibitor
Descriptor: 2-[1-(4,4-Difluorocyclohexyl)-piperidin-4-yl]-6-fluoro-3-oxo-2,3-dihydro-1H-isoindole-4-carboxamide, POLY [ADP-RIBOSE] POLYMERASE 2
Authors:Casale, E, Fasolini, M, Papeo, G, Posteri, H, Borghi, D, Busel, A.A, Caprera, F, Ciomei, M, Cirla, A, Corti, E, DAnello, M, Fasolini, M, Felder, E.R, Forte, B, Galvani, A, Isacchi, A, Khvat, A, Krasavin, M.Y, Lupi, R, Orsini, P, Perego, R, Pesenti, E, Pezzetta, D, Rainoldi, S, RiccardiSirtori, F, Scolaro, A, Sola, F, Zuccotto, F, Donati, D, Montagnoli, A.
Deposit date:2015-04-15
Release date:2015-08-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of 2-[1-(4,4-Difluorocyclohexyl)Piperidin-4-Yl]-6-Fluoro-3-Oxo-2,3-Dihydro-1H-Isoindole-4-Carboxamide (Nms-P118): A Potent, Orally Available and Highly Selective Parp- 1 Inhibitor for Cancer Therapy.
J.Med.Chem., 58, 2015
8F9S
DownloadVisualize
BU of 8f9s by Molmil
Crystal structure of Ky15.2 Fab in complex with circumsporozoite protein NDN peptide
Descriptor: 1,2-ETHANEDIOL, Circumsporozoite protein NDN peptide, Ky15.2 Antibody, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2022-11-24
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
8FA7
DownloadVisualize
BU of 8fa7 by Molmil
Crystal structure of Ky15.11 Fab in complex with circumsporozoite protein KQPA peptide
Descriptor: Circumsporozoite protein KQPA peptide, GLYCEROL, Ky15.11 Antibody, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2022-11-25
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
8A3J
DownloadVisualize
BU of 8a3j by Molmil
X-ray crystal structure of a de novo designed antiparallel coiled-coil heterotetramer with 3 heptad repeats, apCC-Tet*3-A2B2
Descriptor: apCC-Tet*3-A, apCC-Tet*3-B
Authors:Naudin, E.A, Mylemans, B, Albanese, K.I, Woolfson, D.N.
Deposit date:2022-06-08
Release date:2022-10-05
Last modified:2022-11-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:From peptides to proteins: coiled-coil tetramers to single-chain 4-helix bundles.
Chem Sci, 13, 2022
8FB7
DownloadVisualize
BU of 8fb7 by Molmil
Crystal structure of Ky15.10 Fab in complex with circumsporozoite protein NPDP peptide
Descriptor: 1,2-ETHANEDIOL, Circumsporozoite protein NPDP peptide, Ky15.10 Antibody, ...
Authors:Prieto, K, Thai, E, Julien, J.P.
Deposit date:2022-11-29
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
6VH6
DownloadVisualize
BU of 6vh6 by Molmil
Crystal structure of Epstein-Barr Virus Nuclear Antigen-1, EBNA1, bound to fragment
Descriptor: 4-hydroxy-6-methyl-2H-1-benzopyran-2-one, Epstein-Barr nuclear antigen 1
Authors:Messick, T.E, Lieberman, P.M.
Deposit date:2020-01-09
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Biophysical Screens Identify Fragments That Bind to the Viral DNA-Binding Proteins EBNA1 and LANA.
Molecules, 25, 2020
8F95
DownloadVisualize
BU of 8f95 by Molmil
Crystal structure of Ky15.2 Fab in complex with circumsporozoite protein DND peptide
Descriptor: 1,2-ETHANEDIOL, Circumsporozoite protein DND peptide, Ky15.2 Antibody, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2022-11-23
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
8F9T
DownloadVisualize
BU of 8f9t by Molmil
Crystal structure of Ky15.2 Fab in complex with circumsporozoite protein NPDP peptide
Descriptor: 1,2-ETHANEDIOL, Circumsporozoite protein NPDP peptide, Ky15.2 Antibody, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2022-11-24
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
7TB9
DownloadVisualize
BU of 7tb9 by Molmil
Structural characterization of the biological synthetic peptide pCEMP1
Descriptor: CEMP1-p1
Authors:Lopez Giraldo, A, del Rio Portilla, F, Nidome Campos, M, Romo Arevalo, E, Arzate, H.
Deposit date:2021-12-21
Release date:2023-01-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of cementum protein 1 derived peptide (CEMP1-p1) and its role in the mineralization process.
J.Pept.Sci., 29, 2023
8F9F
DownloadVisualize
BU of 8f9f by Molmil
Crystal structure of Ky15.2 Fab in complex with circumsporozoite protein NANP3 peptide
Descriptor: 1,2-ETHANEDIOL, Circumsporozoite protein NANP peptide, Ky15.2 Antibody, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2022-11-23
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
8FA6
DownloadVisualize
BU of 8fa6 by Molmil
Crystal structure of Ky15.10 Fab in complex with circumsporozoite protein DND peptide
Descriptor: 1,2-ETHANEDIOL, Circumsporozoite protein DND peptide, Ky15.10 Antibody, ...
Authors:Thai, E, Prieto, K, Julien, J.P.
Deposit date:2022-11-25
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
5FNU
DownloadVisualize
BU of 5fnu by Molmil
Structure of the Keap1 Kelch domain in complex with a small molecule inhibitor.
Descriptor: (3S)-3-(7-methoxy-1-methyl-1H-benzo[d][1,2,3]triazol-5-yl)-3-(4-methyl-3-(((R)-4-methyl-1,1-dioxido-3,4-dihydro-2H-benzo[b][1,4,5]oxathiazepin-2-yl)methyl)phenyl)propanoic acid, CHLORIDE ION, KELCH-LIKE ECH-ASSOCIATED PROTEIN 1
Authors:Davies, T.G, Wixted, W.E, Coyle, J.E, Griffiths-Jones, C, Hearn, K, McMenamin, R, Norton, D, Rich, S.J, Richardson, C, Saxty, G, Willems, H.M.G, Woolford, A.J, Cottom, J.E, Kou, J, Yonchuk, J.G, Feldser, H.G, Sanchez, Y, Foley, J.P, Bolognese, B.J, Logan, G, Podolin, P.L, Yan, H, Callahan, J.F, Heightman, T.D, Kerns, J.K.
Deposit date:2015-11-16
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Mono-Acidic Inhibitors of the Kelch-Like Ech-Associated Protein 1 : Nuclear Factor Erythroid 2-Related Factor 2 (Keap1:Nrf2) Protein-Protein Interaction with High Cell Potency Identified by Fragment-Based Discovery.
J.Med.Chem., 59, 2016
5MSF
DownloadVisualize
BU of 5msf by Molmil
MS2 PROTEIN CAPSID/RNA COMPLEX
Descriptor: 5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*GP*G)-3', MS2 PROTEIN CAPSID
Authors:Rowsell, S, Stonehouse, N.J, Convery, M.A, Adams, C.J, Ellington, A.D, Hirao, I, Peabody, D.S, Stockley, P.G, Phillips, S.E.V.
Deposit date:1998-05-15
Release date:1998-11-11
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of a series of RNA aptamers complexed to the same protein target.
Nat.Struct.Biol., 5, 1998
8FA9
DownloadVisualize
BU of 8fa9 by Molmil
Crystal structure of Ky15.5 Fab in complex with circumsporozoite protein NPDP peptide
Descriptor: Circumsporozoite protein NPDP peptide, Ky15.5 Antibody, heavy chain, ...
Authors:Thai, E, Prieto, K, Julien, J.P.
Deposit date:2022-11-25
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023
8FB8
DownloadVisualize
BU of 8fb8 by Molmil
Crystal structure of Ky15.10-Y100EK Fab in complex with circumsporozoite protein KQPA peptide
Descriptor: Circumsporozoite protein KQPA peptide, GLYCEROL, Ky15.10-YK Antibody, ...
Authors:Kang, R.W, Thai, E, Julien, J.P.
Deposit date:2022-11-29
Release date:2023-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Molecular determinants of cross-reactivity and potency by VH3-33 antibodies against the Plasmodium falciparum circumsporozoite protein.
Cell Rep, 42, 2023

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon