Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 3048 results

4EB1
DownloadVisualize
BU of 4eb1 by Molmil
Hyperstable in-frame insertion variant of antithrombin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antithrombin-III
Authors:Martinez-Martinez, I, Johnson, D.J.D, Yamasaki, M, Corral, J, Huntington, J.A.
Deposit date:2012-03-23
Release date:2012-07-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Type II antithrombin deficiency caused by a large in-frame insertion: structural, functional and pathological relevance.
J.Thromb.Haemost., 10, 2012
1NYG
DownloadVisualize
BU of 1nyg by Molmil
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE, FAMILY OF 20 STRUCTURES
Descriptor: FYN
Authors:Morton, C.J, Pugh, D.J.R, Campbell, I.D.
Deposit date:1996-04-22
Release date:1996-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and peptide binding of the SH3 domain from human Fyn.
Structure, 4, 1996
5TA8
DownloadVisualize
BU of 5ta8 by Molmil
Crystal structure of PLK1 in complex with a novel 5,6-dihydroimidazolo[1,5-f]pteridine inhibitor
Descriptor: 4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide, Serine/threonine-protein kinase PLK1, ZINC ION
Authors:Skene, R.J, Hosfield, D.J.
Deposit date:2016-09-09
Release date:2017-02-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based design and SAR development of 5,6-dihydroimidazolo[1,5-f]pteridine derivatives as novel Polo-like kinase-1 inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
5TA6
DownloadVisualize
BU of 5ta6 by Molmil
Crystal structure of PLK1 in complex with a novel 5,6-dihydroimidazolo[1,5-f]pteridine inhibitor.
Descriptor: 4-{[(6R)-7-cyano-5-cyclopentyl-6-ethyl-5,6-dihydroimidazo[1,5-f]pteridin-3-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide, Serine/threonine-protein kinase PLK1, ZINC ION
Authors:Skene, R.J, Hosfield, D.J.
Deposit date:2016-09-09
Release date:2017-02-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based design and SAR development of 5,6-dihydroimidazolo[1,5-f]pteridine derivatives as novel Polo-like kinase-1 inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
9D3G
DownloadVisualize
BU of 9d3g by Molmil
Cryo-EM structure of CCR6 bound by SQA1 and OXM1
Descriptor: 1-(4-chlorophenyl)-N-{[(2R)-4-(2,3-dihydro-1H-inden-2-yl)-5-oxomorpholin-2-yl]methyl}cyclopropane-1-carboxamide, 4-[[3,4-bis(oxidanylidene)-2-[[(1~{R})-1-(4-propan-2-ylfuran-2-yl)propyl]amino]cyclobuten-1-yl]amino]-~{N},~{N}-dimethyl-3-oxidanyl-pyridine-2-carboxamide, CCR6, ...
Authors:Wasilko, D.J, Wu, H.
Deposit date:2024-08-10
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural basis for CCR6 modulation by allosteric antagonists.
Nat Commun, 15, 2024
8ZFO
DownloadVisualize
BU of 8zfo by Molmil
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and nTZDpa
Descriptor: 2-chloro-5-nitro-N-phenylbenzamide, 5-CHLORO-1-(4-CHLOROBENZYL)-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2024-05-08
Release date:2024-08-07
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma.
Elife, 2024
9G9Q
DownloadVisualize
BU of 9g9q by Molmil
Crystal structure of PbdA bound to p-methoxybenzoate.
Descriptor: 4-METHOXYBENZOIC ACID, Cytochrome P450 CYP199, GLYCEROL, ...
Authors:Hinchen, D.J, Wolf, M.E, Eltis, L.D, McGeehan, J.E.
Deposit date:2024-07-25
Release date:2024-10-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Characterization of a cytochrome P450 that catalyzes the O-demethylation of lignin-derived benzoates.
J.Biol.Chem., 300, 2024
9DTT
DownloadVisualize
BU of 9dtt by Molmil
Cryo-EM structure of DENV2 NS5 in complex with Stem Loop A (SLA)
Descriptor: RNA-directed RNA polymerase NS5, ZINC ION, stem loop A
Authors:Obi, J.O, Fields, J.K, Snyder, A.G, Deredge, D.J.
Deposit date:2024-10-01
Release date:2024-10-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Dynamics of the Dengue Virus Non-structural 5 (NS5) Interactions with Viral Synthesis Promoter Stem Loop A (SLA)
To Be Published
8ZFR
DownloadVisualize
BU of 8zfr by Molmil
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and nTZDpa
Descriptor: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, 5-CHLORO-1-(4-CHLOROBENZYL)-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2024-05-08
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma.
Elife, 2024
9C67
DownloadVisualize
BU of 9c67 by Molmil
cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in apo form
Descriptor: Adenosine deaminase domain-containing protein, MAGNESIUM ION
Authors:Majumder, P, Patel, D.J.
Deposit date:2024-06-07
Release date:2024-10-30
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The CRISPR-associated adenosine deaminase Cad1 converts ATP to ITP to provide antiviral immunity.
Cell, 2024
9CSI
DownloadVisualize
BU of 9csi by Molmil
A. baumannii MsbA Bound to Cerastecin Compound 5
Descriptor: 3,3'-[(1,4-dioxobutane-1,4-diyl)bis(azanediyl)]bis[(4-butylbenzene-1-sulfonamido)benzoic acid], Lipid A export ATP-binding/permease protein MsbA, MAGNESIUM ION, ...
Authors:Klein, D.J, Ishchenko, A, Soisson, S, Cheng, R, Hennig, M.
Deposit date:2024-07-23
Release date:2024-09-04
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Cerastecin Inhibition of the Lipooligosaccharide Transporter MsbA to Combat Acinetobacter baumannii : From Screening Impurity to In Vivo Efficacy.
J.Med.Chem., 67, 2024
8ZFP
DownloadVisualize
BU of 8zfp by Molmil
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and MRL24
Descriptor: (2S)-2-(3-{[1-(4-METHOXYBENZOYL)-2-METHYL-5-(TRIFLUOROMETHOXY)-1H-INDOL-3-YL]METHYL}PHENOXY)PROPANOIC ACID, 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2024-05-08
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma.
Elife, 2024
9AU7
DownloadVisualize
BU of 9au7 by Molmil
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Composite Map)
Descriptor: Sorting nexin-17, VPS35 endosomal protein-sorting factor-like, Vacuolar protein sorting-associated protein 26C, ...
Authors:Chen, B, Chen, Z, Han, Y, Boesch, D.J, Juneja, P, Burstein, E, Fung, H.Y.J.
Deposit date:2024-02-28
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for Retriever-SNX17 assembly and endosomal sorting
To be published
9BEQ
DownloadVisualize
BU of 9beq by Molmil
Crystal structure of pregnane X receptor ligand binding domain complexed with AP1867
Descriptor: Nuclear receptor subfamily 1 group I member 2, {3-[3-(3,4-DIMETHOXY-PHENYL)-1-(1-{1-[2-(3,4,5-TRIMETHOXY-PHENYL)-BUTYRYL]-PIPERIDIN-2YL}-VINYLOXY)-PROPYL]-PHENOXY}-ACETIC ACID
Authors:Huber, A.D, Poudel, S, Miller, D.J, Chen, T.
Deposit date:2024-04-16
Release date:2024-10-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:PROTAC-mediated activation, rather than degradation, of a nuclear receptor reveals complex ligand-receptor interaction network.
Structure, 2024
9CSG
DownloadVisualize
BU of 9csg by Molmil
Human Serum Albumin Bound to Cerastecin Compound 5e
Descriptor: 2-(4-butylbenzene-1-sulfonamido)-5-(4-{3-carboxy-4-[4-(2-methoxyethyl)benzene-1-sulfonamido]anilino}-4-oxobutanamido)benzoic acid, Albumin, MYRISTIC ACID
Authors:Hruza, A, Klein, D.J, Ishchenko, A.
Deposit date:2024-07-23
Release date:2024-09-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.914 Å)
Cite:Cerastecin Inhibition of the Lipooligosaccharide Transporter MsbA to Combat Acinetobacter baumannii : From Screening Impurity to In Vivo Efficacy.
J.Med.Chem., 67, 2024
9GS9
DownloadVisualize
BU of 9gs9 by Molmil
Tn7016 PseCAST QCascade
Descriptor: Cas6, Cas7.1, Cas8, ...
Authors:Lampe, G.D, Liang, A.R, Zhang, D.J, Fernandez, I.S, Sternberg, S.H.
Deposit date:2024-09-13
Release date:2024-10-16
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structure-guided engineering of type I-F CASTs for targeted gene insertion in human cells.
Biorxiv, 2024
8ZFT
DownloadVisualize
BU of 8zft by Molmil
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and SR1664
Descriptor: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, 4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2024-05-08
Release date:2024-08-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma.
Elife, 2024
9HVP
DownloadVisualize
BU of 9hvp by Molmil
Design, activity and 2.8 Angstroms crystal structure of a C2 symmetric inhibitor complexed to HIV-1 protease
Descriptor: HIV-1 Protease, benzyl [(1R,4S,6S,9R)-4,6-dibenzyl-5-hydroxy-1,9-bis(1-methylethyl)-2,8,11-trioxo-13-phenyl-12-oxa-3,7,10-triazatridec-1-yl]carbamate
Authors:Neidhart, D.J, Erickson, J.
Deposit date:1990-11-06
Release date:1992-04-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Design, activity, and 2.8 A crystal structure of a C2 symmetric inhibitor complexed to HIV-1 protease.
Science, 249, 1990
8ZFN
DownloadVisualize
BU of 8zfn by Molmil
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and BVT.13
Descriptor: 2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID, 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2024-05-08
Release date:2024-08-07
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma.
Elife, 2024
9C77
DownloadVisualize
BU of 9c77 by Molmil
cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in cA4 bound form with ATP.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Adenosine deaminase domain-containing protein, MAGNESIUM ION, ...
Authors:Majumder, P, Patel, D.J.
Deposit date:2024-06-10
Release date:2024-10-30
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The CRISPR-associated adenosine deaminase Cad1 converts ATP to ITP to provide antiviral immunity.
Cell, 2024
8ZFQ
DownloadVisualize
BU of 8zfq by Molmil
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and BVT.13
Descriptor: 2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID, 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2024-05-08
Release date:2024-08-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma.
Elife, 2024
9CKJ
DownloadVisualize
BU of 9ckj by Molmil
Co-crystal structure of 53BP1 tandem Tudor domains in complex with UNC9512
Descriptor: (3S)-1-[4-(4-methylpiperazin-1-yl)pyridine-2-carbonyl]-N-[(3M)-3-(3-oxo-2,3-dihydro-1H-isoindol-5-yl)phenyl]piperidine-3-carboxamide, TP53-binding protein 1, UNKNOWN ATOM OR ION
Authors:Zeng, H, Dong, A, Shell, D.J, Foley, C, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-07-09
Release date:2024-10-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Co-crystal structure of 53BP1 tandem Tudor domains in complex with UNC9512
To be published
8ZFS
DownloadVisualize
BU of 8zfs by Molmil
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and MRL24
Descriptor: (2S)-2-(3-{[1-(4-METHOXYBENZOYL)-2-METHYL-5-(TRIFLUOROMETHOXY)-1H-INDOL-3-YL]METHYL}PHENOXY)PROPANOIC ACID, 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, Peroxisome proliferator-activated receptor gamma
Authors:Shang, J, Kojetin, D.J.
Deposit date:2024-05-08
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma.
Elife, 2024
9C8S
DownloadVisualize
BU of 9c8s by Molmil
CryoEM structure of Cryptococcus neoformans H99 Acetyl-CoA Synthetase in complex with adenosine-5'-ethylphosphate
Descriptor: 5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine, Acetyl-coenzyme A synthetase
Authors:Xu, Z, Schnicker, N.J, Jezeski, A.J, Krysan, D.J.
Deposit date:2024-06-12
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (2.37 Å)
Cite:CryoEM structure of Cryptococcus neoformans H99 Acetyl-CoA Synthetase in complex with adenosine-5'-ethylphosphate
To Be Published
9G9S
DownloadVisualize
BU of 9g9s by Molmil
Crystal structure of PbdA bound to veratrate
Descriptor: 3,4-dimethoxybenzoic acid, Cytochrome P450 CYP199, GLYCEROL, ...
Authors:Hinchen, D.J, Wolf, M.E, Eltis, L.D, McGeehan, J.E.
Deposit date:2024-07-25
Release date:2024-10-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Characterization of a cytochrome P450 that catalyzes the O-demethylation of lignin-derived benzoates.
J.Biol.Chem., 300, 2024

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon