Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 22322 results

4IM2
DownloadVisualize
BU of 4im2 by Molmil
Structure of Tank-Binding Kinase 1
Descriptor: CHLORIDE ION, N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide, Serine/threonine-protein kinase TBK1
Authors:Tu, D, Eck, M.J.
Deposit date:2013-01-01
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5001 Å)
Cite:Structure and ubiquitination-dependent activation of TANK-binding kinase 1.
Cell Rep, 3, 2013
4IM0
DownloadVisualize
BU of 4im0 by Molmil
Structure of Tank-Binding Kinase 1
Descriptor: N-{3-[(5-cyclopropyl-2-{[3-(morpholin-4-ylmethyl)phenyl]amino}pyrimidin-4-yl)amino]propyl}cyclobutanecarboxamide, Serine/threonine-protein kinase TBK1
Authors:Tu, D, Eck, M.J.
Deposit date:2013-01-01
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4001 Å)
Cite:Structure and ubiquitination-dependent activation of TANK-binding kinase 1.
Cell Rep, 3, 2013
4EAK
DownloadVisualize
BU of 4eak by Molmil
Co-crystal structure of an AMPK core with ATP
Descriptor: 5'-AMP-activated protein kinase catalytic subunit alpha-1, 5'-AMP-activated protein kinase subunit beta-1, 5'-AMP-activated protein kinase subunit gamma-1, ...
Authors:Chen, L, Wang, J, Zhang, Y.-Y, Yan, S.F, Neumann, D, Schlattner, U, Wang, Z.-X, Wu, J.-W.
Deposit date:2012-03-22
Release date:2012-06-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:AMP-activated protein kinase undergoes nucleotide-dependent conformational changes
Nat.Struct.Mol.Biol., 19, 2012
4H4Q
DownloadVisualize
BU of 4h4q by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175Q/Q177K (reduced form)
Descriptor: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID
Authors:Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4HED
DownloadVisualize
BU of 4hed by Molmil
Zebrafish chemokine CXL1
Descriptor: Uncharacterized protein
Authors:Rajasekaran, D, Fan, C, Meng, W, Pflugrath, J.W, Lolis, E.J.
Deposit date:2012-10-03
Release date:2013-08-21
Last modified:2014-04-23
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Structural insight into the evolution of a new chemokine family from zebrafish.
Proteins, 82, 2014
4GO4
DownloadVisualize
BU of 4go4 by Molmil
Crystal structure of PnpE in complex with Nicotinamide adenine dinucleotide
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Putative gamma-hydroxymuconic semialdehyde dehydrogenase
Authors:Su, J, Zhang, C, Liu, S, Zhu, D, Gu, L.
Deposit date:2012-08-18
Release date:2013-09-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.099 Å)
Cite:Crystal structure of PnpE in complex with Nicotinamide adenine dinucleotide
To be Published
4EAW
DownloadVisualize
BU of 4eaw by Molmil
HCV NS5B in complex with IDX375
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-{(1S)-3-[(5S)-5-tert-butyl-1-(3,3-dimethylbutyl)-4-hydroxy-2-oxo-2,5-dihydro-1H-pyrrol-3-yl]-1-ethoxy-1-oxido-1,4-dihydro-2,4,1-benzodiazaphosphinin-7-yl}methanesulfonamide, ...
Authors:Dousson, C.B, Paparin, J.-L, Surleraux, D, Augustin, M, Blaesse, M, Hoeppner, S, Krapp, S, Wenzkowski, C.
Deposit date:2012-03-22
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:HCV NS5B in complex with IDX375
To be Published
4GU9
DownloadVisualize
BU of 4gu9 by Molmil
Focal adhesion kinase catalytic domain in complex with (2-Fluoro-phenyl)-(1H-pyrazolo[3,4-d]pyrimidin-4-yl)-amine
Descriptor: Focal adhesion kinase 1, N-(2-fluorophenyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine
Authors:Musil, D.
Deposit date:2012-08-29
Release date:2013-09-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Fragment-based discovery of new highly substituted 1H-pyrrolo[2,3-b]- and 3H-imidazolo[4,5-b]-pyridines as focal adhesion kinase inhibitors.
J.Med.Chem., 56, 2013
4GUE
DownloadVisualize
BU of 4gue by Molmil
Structure of N-terminal kinase domain of RSK2 with flavonoid glycoside quercitrin
Descriptor: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside, MAGNESIUM ION, Ribosomal protein S6 kinase alpha-3, ...
Authors:Derewenda, U, Utepbergenov, D, Szukalska, G, Derewenda, Z.S.
Deposit date:2012-08-29
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification of quercitrin as an inhibitor of the p90 S6 ribosomal kinase (RSK): structure of its complex with the N-terminal domain of RSK2 at 1.8 A resolution.
Acta Crystallogr.,Sect.D, 69, 2013
4EIG
DownloadVisualize
BU of 4eig by Molmil
CA1698 camel antibody fragment in complex with DHFR
Descriptor: CA1698 camel antibody fragment, Dihydrofolate reductase
Authors:Oyen, D, Srinivasan, V.
Deposit date:2012-04-05
Release date:2013-04-24
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanistic analysis of allosteric and non-allosteric effects arising from nanobody binding to two epitopes of the dihyrofolate reductase of Escherichia coli.
Biochim.Biophys.Acta, 1834, 2013
4B5F
DownloadVisualize
BU of 4b5f by Molmil
Substrate bound Neisseria AP endonuclease in absence of metal ions (crystal form 1)
Descriptor: 5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*3DRP*GP*AP*TP*CP*GP)-3', PUTATIVE EXODEOXYRIBONUCLEASE
Authors:Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S.
Deposit date:2012-08-03
Release date:2012-10-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis.
Proc. Natl. Acad. Sci. U.S.A., 109, 2012
1PGV
DownloadVisualize
BU of 1pgv by Molmil
Structural Genomics of Caenorhabditis elegans: tropomodulin C-terminal domain
Descriptor: tropomodulin TMD-1
Authors:Symersky, J, Lu, S, Li, S, Chen, L, Meehan, E, Luo, M, Qiu, S, Bunzel, R.J, Luo, D, Arabashi, A, Nagy, L.A, Lin, G, Luan, W.C.-H, Carson, M, Gray, R, Huang, W, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2003-05-28
Release date:2003-06-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain
Proteins, 56, 2004
4BMB
DownloadVisualize
BU of 4bmb by Molmil
Crystal structure of the N terminal domain of human Galectin 8
Descriptor: GALECTIN-8, GLYCEROL, SODIUM ION, ...
Authors:Buzamet, E, Ruiz, F.M, Menendez, M, Romero, A, Gabius, H.J, Solis, D.
Deposit date:2013-05-07
Release date:2014-03-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.351 Å)
Cite:Natural Single Amino Acid Polymorphism (F19Y) in Human Galectin-8: Detection of Structural Alterations and Increased Growth-Regulatory Activity on Tumor Cells.
FEBS J., 281, 2014
4H4Z
DownloadVisualize
BU of 4h4z by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175Q/T176R/Q177G mutant (oxidized form)
Descriptor: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
Authors:Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4BXC
DownloadVisualize
BU of 4bxc by Molmil
Resolving the activation site of positive regulators in plant phosphoenolpyruvate carboxylase
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-O-phosphono-alpha-D-glucopyranose, ...
Authors:Schlieper, D, Foerster, K, Paulus, J.K, Groth, G.
Deposit date:2013-07-10
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Resolving the Activation Site of Positive Regulators in Plant Phosphoenolpyruvate Carboxylase.
Mol.Plant, 7, 2014
4CFR
DownloadVisualize
BU of 4cfr by Molmil
Ca-bound S100A4 C3S, C81S, C86S and F45W mutant complexed with non- muscle myosin IIA
Descriptor: CALCIUM ION, MYOSIN-9, PROTEIN S100-A4
Authors:Duelli, A, Kiss, B, Lundholm, I, Bodor, A, Radnai, L, Petoukhov, M, Svergun, D, Nyitray, L, Katona, G.
Deposit date:2013-11-19
Release date:2014-05-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The C-Terminal Random Coil Region Tunes the Ca2+-Binding Affinity of S100A4 Through Conformational Activation.
Plos One, 9, 2014
4CAD
DownloadVisualize
BU of 4cad by Molmil
Mechanism of farnesylated CAAX protein processing by the integral membrane protease Rce1
Descriptor: ANTIBODY FAB FRAGMENT HEAVY CHAIN, ANTIBODY FAB FRAGMENT LIGHT CHAIN, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Kulkarni, K, Manolaridis, I, Dodd, R.B, Cronin, N, Ogasawara, S, Iwata, S, Barford, D.
Deposit date:2013-10-08
Release date:2013-11-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of Farnesylated Caax Protein Processing by the Intramembrane Protease Rce1
Nature, 504, 2013
4GRN
DownloadVisualize
BU of 4grn by Molmil
crystal structure of PAAM mutant of human MIF
Descriptor: CHLORIDE ION, Macrophage migration inhibitory factor, SODIUM ION, ...
Authors:Fan, C, Lolis, E, Rajesekaran, D.
Deposit date:2012-08-26
Release date:2013-09-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:crystallographic and biological chacerterization of N- and C-terminus of MIF
To be Published
4GS7
DownloadVisualize
BU of 4gs7 by Molmil
Structure of the Interleukin-15 quaternary complex
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ring, A.M, Ozkan, E, Feng, D, Garcia, K.C.
Deposit date:2012-08-27
Release date:2012-11-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.
Nat.Immunol., 13, 2012
4BW4
DownloadVisualize
BU of 4bw4 by Molmil
The first bromodomain of human BRD4 in complex with 3,5 dimethylisoxaxole ligand
Descriptor: 7-(3,5-dimethylisoxazol-4-yl)-8-methoxy-1-(2-(trifluoromethoxy)phenyl)-1h-imidazo[4,5-c][1,5]naphthyridin-2(3h)-one, BROMODOMAIN-CONTAINING PROTEIN 4
Authors:Chung, C, Mirguet, O, Lamotte, Y, Bamborough, P, Delannee, D, Bouillot, A, Gellibert, F, Krysa, G, Lewis, A, Witherington, J, Huet, P, Dudit, Y, Trottet, L, Nicodeme, E.
Deposit date:2013-06-29
Release date:2013-09-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Naphthyridines as Novel Bet Family Bromodomain Inhibitors.
Chemmedchem, 9, 2014
4GYD
DownloadVisualize
BU of 4gyd by Molmil
Nostoc sp Cytochrome c6
Descriptor: Cytochrome c6, HEME C
Authors:Skubak, P, Ubbink, M, Cavazzini, D, Rossi, G.L, Pannu, N.S.
Deposit date:2012-09-05
Release date:2013-09-11
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The dynamic complex of cytochrome c6 and cytochrome f studied with paramagnetic NMR spectroscopy
Biochim.Biophys.Acta, 1837, 2014
4BZ3
DownloadVisualize
BU of 4bz3 by Molmil
Crystal structure of the metallo-beta-lactamase VIM-2
Descriptor: BETA-LACTAMASE VIM-2, FORMIC ACID, SODIUM ION, ...
Authors:Zollman, D, Brem, J, McDonough, M.A, van Berkel, S.S, Schofield, C.J.
Deposit date:2013-07-23
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.294 Å)
Cite:Structural Basis of Metallo-beta-Lactamase Inhibition by Captopril Stereoisomers.
Antimicrob. Agents Chemother., 60, 2015
4C27
DownloadVisualize
BU of 4c27 by Molmil
Crystal structure of Trypanosoma cruzi CYP51 bound to the inhibitor (R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-2-fluoro-4-(4-(4-(trifluoromethyl)phenyl)piperazin-1-yl)benzamide
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Nalpha-(2-fluoro-4-{4-[4-(trifluoromethyl)phenyl]piperazin-1-yl}benzoyl)-N-pyridin-4-yl-D-tryptophanamide, ...
Authors:Vieira, D.F, Calvet, C.M, Choi, J.Y, Cameron, M.D, Gut, J, Kellar, D, Siqueira-Neto, J.L, McKerrow, J.H, Roush, W.R, Podust, L.M.
Deposit date:2013-08-16
Release date:2014-09-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Binding Mode and Potency of N-Indolyl-Oxopyridinyl-4-Amino-Propanyl-Based Inhibitors Targeting Trypanosoma Cruzi Cyp51
J.Med.Chem., 57, 2014
4BWI
DownloadVisualize
BU of 4bwi by Molmil
Structure of the phytochrome Cph2 from Synechocystis sp. PCC6803
Descriptor: FORMIC ACID, GLUTAMIC ACID, GLYCEROL, ...
Authors:Anders, K, Angerer, V, Widany, G.D, Mroginski, M.A, von Stetten, D, Essen, L.-O.
Deposit date:2013-07-03
Release date:2013-10-30
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the Cyanobacterial Phytochrome 2 Photosensor Implies a Tryptophan Switch for Phytochrome Signaling.
J.Biol.Chem., 288, 2013
4H44
DownloadVisualize
BU of 4h44 by Molmil
2.70 A Cytochrome b6f Complex Structure From Nostoc PCC 7120
Descriptor: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
Authors:Hasan, S.S, Yamashita, E, Baniulis, D, Cramer, W.A.
Deposit date:2012-09-16
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Quinone-dependent proton transfer pathways in the photosynthetic cytochrome b6f complex
Proc.Natl.Acad.Sci.USA, 110, 2013

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon