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PDB: 22271 results

4DDW
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Thermotoga maritima reverse gyrase, c-centered orthorhombic form
Descriptor: MAGNESIUM ION, PYROPHOSPHATE 2-, Reverse gyrase, ...
Authors:Rudolph, M.G, Klostermeier, D.
Deposit date:2012-01-19
Release date:2012-12-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling.
Nucleic Acids Res., 41, 2013
4DJZ
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BU of 4djz by Molmil
Catalytic fragment of masp-1 in complex with its specific inhibitor developed by directed evolution on sgci scaffold
Descriptor: Mannan-binding lectin serine protease 1 heavy chain, Mannan-binding lectin serine protease 1 light chain, Protease inhibitor SGPI-2
Authors:Heja, D, Harmat, V, Fodor, K, Wilmanns, M, Dobo, J, Kekesi, K.A, Zavodszky, P, Gal, P, Pal, G.
Deposit date:2012-02-03
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Monospecific Inhibitors Show That Both Mannan-binding Lectin-associated Serine Protease-1 (MASP-1) and -2 Are Essential for Lectin Pathway Activation and Reveal Structural Plasticity of MASP-2.
J.Biol.Chem., 287, 2012
4DLO
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BU of 4dlo by Molmil
Crystal structure of the GAIN and HormR domains of brain angiogenesis inhibitor 3 (BAI3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Brain-specific angiogenesis inhibitor 3, ...
Authors:Arac, D, Boucard, A.A, Bolliger, M.F, Nguyen, J, Soltis, M, Sudhof, T.C, Brunger, A.T.
Deposit date:2012-02-06
Release date:2012-02-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A novel evolutionarily conserved domain of cell-adhesion GPCRs mediates autoproteolysis.
Embo J., 31, 2012
4DNV
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BU of 4dnv by Molmil
Crystal structure of the W285F mutant of UVB-resistance protein UVR8
Descriptor: AT5g63860/MGI19_6
Authors:Wu, D, Hu, Q, Yan, Z, Chen, W, Yan, C, Zhang, J, Wang, J, Shi, Y.
Deposit date:2012-02-09
Release date:2012-03-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Structural basis of ultraviolet-B perception by UVR8.
Nature, 484, 2012
4DTH
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BU of 4dth by Molmil
Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ATP and Mg++
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Durand, E, Audoly, G, Derrez, E, Spinelli, S, Ortiz-Lombardia, M, Cascales, E, Raoult, D, Cambillau, C.
Deposit date:2012-02-21
Release date:2012-08-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ATP and Mg++
J.Biol.Chem., 2012
4DP3
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Quadruple mutant (N51I+C59R+S108N+I164L) plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with P218 and NADPH
Descriptor: 3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid, Bifunctional dihydrofolate reductase-thymidylate synthase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Yuthavong, Y, Vilaivan, T, Kamchonwongpaisan, S, Charman, S.A, McLennan, D.N, White, K.L, Vivas, L, Bongard, E, Chitnumsub, P, Tarnchompoo, B, Thongphanchang, C, Taweechai, S, Vanichtanakul, J, Arwon, U, Fantauzzi, P, Yuvaniyama, J, Charman, W.N, Matthews, D.
Deposit date:2012-02-13
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Malarial dihydrofolate reductase as a paradigm for drug development against a resistance-compromised target
Proc.Natl.Acad.Sci.USA, 109, 2012
4DSY
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BU of 4dsy by Molmil
Crystal structure of red kidney bean purple acid phosphatase in complex with Maybridge fragment CC24201
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-phenylpyridine-3-carboxylic acid, ...
Authors:Feder, D, Hussein, W.M, Clayton, D.J, Kan, M, Schenk, G, McGeary, R.P, Guddat, L.W.
Deposit date:2012-02-20
Release date:2012-09-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Identification of purple acid phosphatase inhibitors by fragment-based screening: promising new leads for osteoporosis therapeutics.
Chem.Biol.Drug Des., 80, 2012
4DCC
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BU of 4dcc by Molmil
Crystal structure of had family enzyme bt-2542 from bacteroides thetaiotaomicron (target efi-501088)
Descriptor: CHLORIDE ION, Putative haloacid dehalogenase-like hydrolase, SODIUM ION, ...
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Gerlt, J.A, Allen, K.N, Dunaway-Mariano, D, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-01-17
Release date:2012-02-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of protein Bt-2542 from Bacteroides Thetaiotaomicron (Target Efi-501088)
To be Published
4DCL
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BU of 4dcl by Molmil
Computationally Designed Self-assembling tetrahedron protein, T308, Crystallized in space group F23
Descriptor: Putative acetyltransferase SACOL2570
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-17
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
4DCU
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BU of 4dcu by Molmil
Crystal Structure of B. subtilis EngA in complex with GDP
Descriptor: GTP-BINDING PROTEIN ENGA, GUANOSINE-5'-DIPHOSPHATE
Authors:Reiser, J.-B, Housset, D, Foucher, A.-E, Jault, J.-M.
Deposit date:2012-01-18
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Potassium Acts as a GTPase-Activating Element on Each Nucleotide-Binding Domain of the Essential Bacillus subtilis EngA.
Plos One, 7, 2012
4DAM
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BU of 4dam by Molmil
Crystal structure of small single-stranded DNA-binding protein from Streptomyces coelicolor
Descriptor: Single-stranded DNA-binding protein 1
Authors:Filic, Z, Herron, P, Ivic, N, Luic, M, Manjasetty, B.A, Paradzik, T, Vujaklija, D.
Deposit date:2012-01-13
Release date:2013-01-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-function relationships of two paralogous single-stranded DNA-binding proteins from Streptomyces coelicolor: implication of SsbB in chromosome segregation during sporulation.
Nucleic Acids Res., 41, 2013
4DG5
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BU of 4dg5 by Molmil
Crystal structure of staphylococcal Phosphoglycerate kinase
Descriptor: Phosphoglycerate kinase
Authors:Roychowdhury, A, Mukherjee, S, Dutta, D, Das, A.K.
Deposit date:2012-01-25
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure based functional analysis of Staphylococcal Phosphoglycerate kinase
To be Published
4E1D
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BU of 4e1d by Molmil
Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ADP and Mn++
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
Authors:Durand, E, Audoly, G, Derrez, E, Spinelli, S, Ortiz-Lombardia, M, Cascales, E, Raoult, D, Cambillau, C.
Deposit date:2012-03-06
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure and functional characterization of the Vibrio cholerae toxin from the VgrG/MARTX family.
J.Biol.Chem., 2012
4DD0
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BU of 4dd0 by Molmil
EVAL processed HEWL, cisplatin aqueous glycerol
Descriptor: GLYCEROL, Lysozyme C
Authors:Tanley, S.W, Schreurs, A.M, Kroon-Batenburg, L.M, Meredith, J, Prendergast, R, Walsh, D, Bryant, P, Levy, C, Helliwell, J.R.
Deposit date:2012-01-18
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural studies of the effect that dimethyl sulfoxide (DMSO) has on cisplatin and carboplatin binding to histidine in a protein.
Acta Crystallogr.,Sect.D, 68, 2012
4DJI
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BU of 4dji by Molmil
Structure of glutamate-GABA antiporter GadC
Descriptor: Probable glutamate/gamma-aminobutyrate antiporter
Authors:Ma, D, Lu, P.L, Yan, C.Y, Fan, C, Yin, P, Wang, J.W, Shi, Y.G.
Deposit date:2012-02-02
Release date:2012-03-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.187 Å)
Cite:Structure and mechanism of a glutamate-GABA antiporter
Nature, 483, 2012
4DLQ
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BU of 4dlq by Molmil
Crystal structure of the GAIN and HormR domains of CIRL 1/Latrophilin 1 (CL1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Arac, D, Boucard, A.A, Bolliger, M.F, Nguyen, J, Soltis, M, Sudhof, T.C, Brunger, A.T.
Deposit date:2012-02-06
Release date:2012-02-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A novel evolutionarily conserved domain of cell-adhesion GPCRs mediates autoproteolysis.
Embo J., 31, 2012
4DLI
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BU of 4dli by Molmil
Human p38 MAP kinase in complex with RL87
Descriptor: Mitogen-activated protein kinase 14, N~4~-cyclopropyl-2-phenylquinazoline-4,7-diamine
Authors:Gruetter, C, Getlik, M, Simard, J.R, Rauh, D.
Deposit date:2012-02-06
Release date:2013-01-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Fluorophore labeled kinase detects ligands that bind within the MAPK insert of p38alpha kinase.
Plos One, 7, 2012
4DQ9
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BU of 4dq9 by Molmil
Crystal structure of the minor pseudopilin EPSH from the type II secretion system of Vibrio cholerae
Descriptor: CHLORIDE ION, General secretion pathway protein H, SODIUM ION
Authors:Raghunathan, K, Vago, F.S, Grindem, D, Ball, T, Wedemeyer, W.J, Arvidson, D.N.
Deposit date:2012-02-15
Release date:2013-03-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:The 1.59 angstrom resolution structure of the minor pseudopilin EpsH of Vibrio cholerae reveals a long flexible loop.
Biochim.Biophys.Acta, 1844, 2013
4DM9
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BU of 4dm9 by Molmil
The Crystal Structure of Ubiquitin Carboxy-terminal hydrolase L1 (UCHL1) bound to a tripeptide fluoromethyl ketone Z-VAE(OMe)-FMK
Descriptor: Tripeptide fluoromethyl ketone inhibitor Z-VAE(OMe)-FMK, Ubiquitin carboxyl-terminal hydrolase isozyme L1
Authors:Davies, C.W, Chaney, J, Korbel, G, Ringe, D, Petsko, G.A, Ploegh, H, Das, C.
Deposit date:2012-02-07
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The co-crystal structure of ubiquitin carboxy-terminal hydrolase L1 (UCHL1) with a tripeptide fluoromethyl ketone (Z-VAE(OMe)-FMK).
Bioorg.Med.Chem.Lett., 22, 2012
6Y1C
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BU of 6y1c by Molmil
X-ray structure of Lactobacillus brevis alcohol dehydrogenase mutant D54F
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Hermann, J, Bischoff, D, Janowski, R, Niessing, D, Grob, P, Hekmat, D, Weuster-Botz, D.
Deposit date:2020-02-11
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Controlling Protein Crystallization by Free Energy Guided Design of Interactions at Crystal Contacts
Crystals, 11, 2021
2JQW
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BU of 2jqw by Molmil
A novel lectin-like peptide from Odorrana grahami
Descriptor: lectin-like peptide
Authors:Li, J, Lin, D, Lai, R.
Deposit date:2007-06-13
Release date:2008-06-17
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:A novel lectin-like peptide from Odorrana grahami
To be Published
4M35
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BU of 4m35 by Molmil
Crystal structure of gated-pore mutant H126/141D of second DNA-Binding protein under starvation from Mycobacterium smegmatis
Descriptor: CHLORIDE ION, FE (II) ION, MAGNESIUM ION, ...
Authors:Williams, S.M, Chandran, A.V, Vijayabaskar, M.S, Roy, S, Balaram, H, Vishveshwara, S, Vijayan, M, Chatterji, D.
Deposit date:2013-08-06
Release date:2014-03-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A histidine aspartate ionic lock gates the iron passage in miniferritins from Mycobacterium smegmatis
J.Biol.Chem., 289, 2014
2JQ0
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BU of 2jq0 by Molmil
Phylloseptin-1
Descriptor: Phylloseptin-1
Authors:Resende, J.M, Mendonca Moraes, C, Almeida, F.C.L, Prates, M.V, Cesar, A, Valente, A, Bemquerer, M.P, Pilo-Veloso, D, Bechinger, B.
Deposit date:2007-05-25
Release date:2008-06-03
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Solution NMR structures of the antimicrobial peptides phylloseptin-1, -2, and -3 and biological activity: The role of charges and hydrogen bonding interactions in stabilizing helix conformations
Peptides, 29, 2008
2JQN
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BU of 2jqn by Molmil
Solution NMR structure of CC0527 from Caulobacter crescentus. Northeast Structural Genomics Target CCR55
Descriptor: Hypothetical protein
Authors:Aramini, J.M, Rossi, P, Moseley, H.N.B, Wang, D, Nwosu, C, Cunningham, K, Ma, L, Xiao, R, Liu, J, Baran, M.C, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-06-05
Release date:2007-07-03
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Solution NMR structure of CC0527 from Caulobacter crescentus
To be Published
2JOM
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BU of 2jom by Molmil
NMR structure of rabbit prion protein mutation I214V
Descriptor: Major prion protein
Authors:Li, J, Lin, D.
Deposit date:2007-03-14
Release date:2008-01-29
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Solution Structure and Dynamics of the I214V Mutant of the Rabbit Prion Protein.
Plos One, 5, 2010

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