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PDB: 52974 results

5DCL
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BU of 5dcl by Molmil
Structure of a lantibiotic response regulator: N terminal domain of the nisin resistance regulator NsrR
Descriptor: 1,2-ETHANEDIOL, PhoB family transcriptional regulator
Authors:Khosa, S, Kleinschrodt, D, Hoeppner, A, Smits, S.H.
Deposit date:2015-08-24
Release date:2016-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structure of the Response Regulator NsrR from Streptococcus agalactiae, Which Is Involved in Lantibiotic Resistance.
Plos One, 11, 2016
3EF6
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BU of 3ef6 by Molmil
Crystal structure of Toluene 2,3-Dioxygenase Reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, SULFATE ION, ...
Authors:Friemann, R, Lee, K, Brown, E.N, Gibson, D.T, Eklund, H, Ramaswamy, S.
Deposit date:2008-09-08
Release date:2009-03-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system
Acta Crystallogr.,Sect.D, 65, 2009
6PM8
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BU of 6pm8 by Molmil
Protein Tyrosine Phosphatase 1B (1-301), P180A mutant, vanadate bound state
Descriptor: GLYCEROL, Tyrosine-protein phosphatase non-receptor type 1, VANADATE ION
Authors:Cui, D.S, Lipchock, J.M, Loria, J.P.
Deposit date:2019-07-01
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Uncovering the Molecular Interactions in the Catalytic Loop That Modulate the Conformational Dynamics in Protein Tyrosine Phosphatase 1B.
J.Am.Chem.Soc., 141, 2019
4V6U
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BU of 4v6u by Molmil
Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10P, ...
Authors:Armache, J.-P, Anger, A.M, Marquez, V, Frankenberg, S, Froehlich, T, Villa, E, Berninghausen, O, Thomm, M, Arnold, G.J, Beckmann, R, Wilson, D.N.
Deposit date:2012-08-09
Release date:2014-07-09
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Promiscuous behaviour of archaeal ribosomal proteins: Implications for eukaryotic ribosome evolution.
Nucleic Acids Res., 41, 2013
8IBQ
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BU of 8ibq by Molmil
Bromodomain and Extra-terminal Domain (BET) BRD4
Descriptor: 7-[2-fluoranyl-3-(1,3,5-trimethylpyrazol-4-yl)phenyl]-1~{H}-imidazo[4,5-b]pyridine, Bromodomain-containing protein 4
Authors:Cao, D, Zhiyan, D, Xiong, B.
Deposit date:2023-02-10
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Discovery of 1 H -Imidazo[4,5- b ]pyridine Derivatives as Potent and Selective BET Inhibitors for the Management of Neuropathic Pain.
J.Med.Chem., 66, 2023
4R1D
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BU of 4r1d by Molmil
The crystal structure of Tle4-Tli4 complex
Descriptor: CALCIUM ION, Uncharacterized protein
Authors:Lu, D.
Deposit date:2014-08-05
Release date:2014-12-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.749 Å)
Cite:The structural basis of the Tle4-Tli4 complex reveals the self-protection mechanism of H2-T6SS in Pseudomonas aeruginosa.
Acta Crystallogr.,Sect.D, 70, 2014
2W9R
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BU of 2w9r by Molmil
Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS
Descriptor: ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS, DNA PROTECTION DURING STARVATION PROTEIN
Authors:Schuenemann, V, Kralik, S.M, Albrecht, R, Spall, S.K, Truscott, K.N, Dougan, D.A, Zeth, K.
Deposit date:2009-01-28
Release date:2009-04-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of N-End Rule Substrate Recognition in Escherichia Coli by the Clpap Adaptor Protein Clps.
Embo Rep., 10, 2009
2VRD
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BU of 2vrd by Molmil
THE STRUCTURE OF THE ZINC FINGER FROM THE HUMAN SPLICEOSOMAL PROTEIN U1C
Descriptor: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C, ZINC ION
Authors:Muto, Y, Pomeranz-Krummel, D, Oubridge, C, Hernandez, H, Robinson, C, Neuhaus, D, Nagai, K.
Deposit date:2008-03-31
Release date:2008-04-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Structure and Biochemical Properties of the Human Spliceosomal Protein U1C
J.Mol.Biol., 341, 2004
4R32
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BU of 4r32 by Molmil
Crystal Structure Analysis of Pyk2 and Paxillin LD motifs
Descriptor: Paxillin, Protein-tyrosine kinase 2-beta
Authors:Vanarotti, M, Miller, D.J, Guibao, C.D, Nourse, A, Zheng, J.J.
Deposit date:2014-08-13
Release date:2014-09-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.505 Å)
Cite:Structural and Mechanistic Insights into the Interaction between Pyk2 and Paxillin LD Motifs.
J.Mol.Biol., 426, 2014
8IDH
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BU of 8idh by Molmil
Bromodomain and Extra-terminal Domain (BET) BRD4
Descriptor: 7-[2-fluoranyl-3-(1,3,5-trimethylpyrazol-4-yl)phenyl]-1~{H}-imidazo[4,5-b]pyridine, Bromodomain-containing protein 4
Authors:Cao, D, Zhiyan, D, Xiong, B.
Deposit date:2023-02-13
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Discovery of 1 H -Imidazo[4,5- b ]pyridine Derivatives as Potent and Selective BET Inhibitors for the Management of Neuropathic Pain.
J.Med.Chem., 66, 2023
4R36
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BU of 4r36 by Molmil
Crystal structure analysis of LpxA, a UDP-N-acetylglucosamine acyltransferase from Bacteroides fragilis 9343
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ACETATE ION, ...
Authors:Ngo, A, Fong, K, Cox, D, Fisher, A, Chen, X.
Deposit date:2014-08-14
Release date:2015-05-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of Bacteroides fragilis uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) acyltransferase (BfLpxA).
Acta Crystallogr.,Sect.D, 71, 2015
8I23
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BU of 8i23 by Molmil
Clostridium thermocellum RNA polymerase transcription open complex with SigI1 and its promoter
Descriptor: DNA (80-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Li, J, Zhang, H, Li, D, Feng, Y, Zhu, P.
Deposit date:2023-01-13
Release date:2023-10-11
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structure of the transcription open complex of distinct sigma I factors.
Nat Commun, 14, 2023
8I24
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BU of 8i24 by Molmil
Clostridium thermocellum RNA polymerase transcription open complex with SigI6 and its promoter
Descriptor: DNA (80-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Li, J, Zhang, H, Li, D, Feng, Y, Zhu, P.
Deposit date:2023-01-13
Release date:2023-10-11
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structure of the transcription open complex of distinct sigma I factors.
Nat Commun, 14, 2023
3E27
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BU of 3e27 by Molmil
Nicotinic acid mononucleotide (NaMN) adenylyltransferase from Bacillus anthracis: product complex
Descriptor: MAGNESIUM ION, NICOTINIC ACID ADENINE DINUCLEOTIDE, Nicotinate (Nicotinamide) nucleotide adenylyltransferase
Authors:Martynowski, D, Eyobo, Y, Zhang, H.
Deposit date:2008-08-05
Release date:2008-09-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Targeting NAD biosynthesis in bacterial pathogens: Structure-based development of inhibitors of nicotinate mononucleotide adenylyltransferase NadD.
Chem.Biol., 16, 2009
7T4M
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BU of 7t4m by Molmil
Structure of dodecameric unphosphorylated Pediculus humanus (Ph) PINK1 D357A mutant
Descriptor: Serine/threonine-protein kinase PINK1, putative
Authors:Gan, Z.Y, Leis, A, Dewson, G, Glukhova, A, Komander, D.
Deposit date:2021-12-10
Release date:2022-01-12
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Activation mechanism of PINK1.
Nature, 602, 2022
6PDI
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BU of 6pdi by Molmil
Human PIM1 bound to benzothiophene inhibitor 224
Descriptor: 1,2-ETHANEDIOL, 4-(5-{[(3-aminophenyl)methyl]carbamoyl}thiophen-2-yl)-1-benzothiophene-2-carboxamide, GLYCEROL, ...
Authors:Godoi, P.H.C, Fala, A.M, Santiago, A.S, Ramos, P.Z, Sriranganadane, D, Mascarello, A, Segretti, N, Azevedo, H, Guimaraes, C.R.W, Arruda, P, Elkins, J.M, Counago, R.M, Structural Genomics Consortium (SGC)
Deposit date:2019-06-19
Release date:2019-07-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Human PIM1
To Be Published
2HZ4
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BU of 2hz4 by Molmil
Abl kinase domain unligated and in complex with tetrahydrostaurosporine
Descriptor: 1,2,3,4-TETRAHYDROGEN-STAUROSPORINE, Proto-oncogene tyrosine-protein kinase ABL1
Authors:Cowan-Jacob, S.W, Fendrich, G, Liebetanz, J, Fabbro, D, Manley, P.
Deposit date:2006-08-08
Release date:2007-01-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural biology contributions to the discovery of drugs to treat chronic myelogenous leukaemia.
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
6PDR
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BU of 6pdr by Molmil
Vaccine-elicited murine FP-targeting antibody vFP25.18 in complex with HIV fusion peptide (residue 512-519)
Descriptor: HIV fusion peptide residue 512-519, antibody vFP25.18 heavy chain, antibody vFP25.18 light chain
Authors:Xu, K, Liu, K, Wang, Y, Kwong, P.D.
Deposit date:2019-06-19
Release date:2020-06-24
Method:X-RAY DIFFRACTION (1.555 Å)
Cite:Modular recognition of antigens provides a mechanism that improves vaccine-elicited antibody-class frequencies
To Be Published
5DCM
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BU of 5dcm by Molmil
Structure of a lantibiotic response regulator: C-terminal domain of the nisin resistance regulator NsrR
Descriptor: PhoB family transcriptional regulator
Authors:Khosa, S, Kleinschrodt, D, Hoeppner, A, Smits, S.H.J.
Deposit date:2015-08-24
Release date:2016-07-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the Response Regulator NsrR from Streptococcus agalactiae, Which Is Involved in Lantibiotic Resistance.
Plos One, 11, 2016
4R5L
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BU of 4r5l by Molmil
Crystal structure of the DnaK C-terminus (Dnak-SBD-C)
Descriptor: CALCIUM ION, Chaperone protein DnaK, PHOSPHATE ION, ...
Authors:Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
Deposit date:2014-08-21
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9701 Å)
Cite:Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
3ECJ
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BU of 3ecj by Molmil
Structure of E323L mutant of Homoprotocatechuate 2,3-Dioxygenase from Brevibacterium fuscum at 1.65A resolution
Descriptor: CALCIUM ION, CHLORIDE ION, FE (II) ION, ...
Authors:Kovaleva, E.G, Lipscomb, J.D.
Deposit date:2008-08-31
Release date:2008-10-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Intermediate in the O-O Bond Cleavage Reaction of an Extradiol Dioxygenase.
Biochemistry, 47, 2008
8I3X
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BU of 8i3x by Molmil
Rice APIP6-RING homodimer
Descriptor: RING-type domain-containing protein, ZINC ION
Authors:Zheng, Y, Zhang, X, Liu, Y, Liu, J, Wang, D.
Deposit date:2023-01-18
Release date:2023-11-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of rice APIP6 reveals a new dimerization mode of RING-type E3 ligases that facilities the construction of its working model
Phytopathol Res, 5, 2023
2VYZ
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BU of 2vyz by Molmil
Mutant Ala55Phe of Cerebratulus lacteus mini-hemoglobin
Descriptor: ACETATE ION, GLYCEROL, NEURAL HEMOGLOBIN, ...
Authors:Salter, M.D, Nienhaus, K, Nienhaus, G.U, Dewilde, S, Moens, L, Pesce, A, Nardini, M, Bolognesi, M, Olson, J.S.
Deposit date:2008-07-29
Release date:2008-10-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Apolar Channel in Cerebratulus Lacteus Hemoglobin is the Route for O2 Entry and Exit.
J.Biol.Chem., 283, 2008
4RCW
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BU of 4rcw by Molmil
Crystal structure of human Slitrk1
Descriptor: SLIT and NTRK-like protein 1
Authors:Kim, H.M, Park, B.S, Kim, D, Lee, S.G.
Deposit date:2014-09-17
Release date:2014-11-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1925 Å)
Cite:Structural basis for LAR-RPTP/Slitrk complex-mediated synaptic adhesion.
Nat Commun, 5, 2014
6IDJ
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BU of 6idj by Molmil
Crystal structure of human DHODH in complex with ferulenol
Descriptor: 4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one, ACETATE ION, Dihydroorotate dehydrogenase (quinone), ...
Authors:Shiba, T, Inaoka, D.K, Sato, D, Hartuti, E.D, Amalia, E, Nagahama, M, Yoshioka, Y, Matsubayashi, M, Balogun, E.O, Tsuji, N, Kita, K, Harada, S.
Deposit date:2018-09-10
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Biochemical Features of Eimeria tenella Dihydroorotate Dehydrogenase, a Potential Drug Target.
Genes (Basel), 11, 2020

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