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PDB: 53012 results

8PJE
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BU of 8pje by Molmil
Human Leukocyte Antigen class II allotype DR1 presenting influenza A virus haemagglutinin (HA)306-318 PKYVKQNTLKLAT
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
Authors:MacLachlan, B.J, Wall, A, Greenshields-Watson, A.L, Hesketh, S.J, Cole, D.K, Rizkallah, P.J, Godkin, A.J.
Deposit date:2023-06-23
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A targeted single mutation in influenza A virus universal epitope transforms immunogenicity and protective immunity via CD4 + T cell activation.
Cell Rep, 43, 2024
4YJJ
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BU of 4yjj by Molmil
Crystal structure of Phycocyanin from marine cyanobacterium Phormidium rubidum sp. A09DM
Descriptor: Alpha Subunit of Cyanobacterial Phycocyanine protein, Beta Subunit of Cyanobacterial Phycocyanine protein, PHYCOCYANOBILIN
Authors:Gupta, G.D, Kumar, V, Sonani, R.R, Madamwar, D.
Deposit date:2015-03-03
Release date:2016-03-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Phycocyanin from marine cyanobacterium Phormidium rubidum sp. A09DM
To Be Published
7TGN
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BU of 7tgn by Molmil
Crystal structure of DesD, the desferrioxamine synthetase from the Streptomyces violaceus salmycin biosynthetic pathway
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, Desferrioxamine synthetase DesD, ...
Authors:Patel, K.D, Gulick, A.M.
Deposit date:2022-01-07
Release date:2022-07-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:An acyl-adenylate mimic reveals the structural basis for substrate recognition by the iterative siderophore synthetase DesD.
J.Biol.Chem., 298, 2022
5J1L
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BU of 5j1l by Molmil
Crystal structure of Csd1-Csd2 dimer I
Descriptor: ToxR-activated gene (TagE), ZINC ION
Authors:An, D.R, Suh, S.W.
Deposit date:2016-03-29
Release date:2016-10-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural Basis of the Heterodimer Formation between Cell Shape-Determining Proteins Csd1 and Csd2 from Helicobacter pylori
Plos One, 11, 2016
7JW0
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BU of 7jw0 by Molmil
SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S304 Fab heavy chain, ...
Authors:Walls, A.C, Park, Y.J, Tortorici, M.A, Czudnochowski, N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G, Veesler, D.
Deposit date:2020-08-24
Release date:2020-10-14
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell, 183, 2020
6PGV
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BU of 6pgv by Molmil
Human Josephin-2 in complex with ubiquitin
Descriptor: ETHANAMINE, Josephin-2, Polyubiquitin-B
Authors:Grasty, K.C, Weeks, S.D, Loll, P.J.
Deposit date:2019-06-24
Release date:2019-10-23
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the activity and regulation of human Josephin-2
J.Struct.Biol., 3, 2019
6PHS
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BU of 6phs by Molmil
Protein Tyrosine Phosphatase 1B (1-301), P185A mutant, vanadate bound state
Descriptor: GLYCEROL, Tyrosine-protein phosphatase non-receptor type 1, VANADATE ION
Authors:Cui, D.S, Lipchock, J.M, Loria, J.P.
Deposit date:2019-06-25
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.129 Å)
Cite:Uncovering the Molecular Interactions in the Catalytic Loop That Modulate the Conformational Dynamics in Protein Tyrosine Phosphatase 1B.
J.Am.Chem.Soc., 141, 2019
6SXB
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BU of 6sxb by Molmil
XPF-ERCC1 Cryo-EM Structure, DNA-Bound form
Descriptor: DNA (5'-D(*TP*CP*AP*GP*CP*AP*TP*CP*TP*G)-3'), DNA (5'-D(P*CP*AP*GP*AP*TP*GP*CP*TP*GP*A)-3'), DNA excision repair protein ERCC-1, ...
Authors:Jones, M.L, Briggs, D.C, McDonald, N.Q.
Deposit date:2019-09-25
Release date:2020-03-11
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Cryo-EM structures of the XPF-ERCC1 endonuclease reveal how DNA-junction engagement disrupts an auto-inhibited conformation.
Nat Commun, 11, 2020
6N79
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BU of 6n79 by Molmil
Structure of the human JAK1 kinase domain with compound 20
Descriptor: GLYCEROL, N-{5-[5-chloro-2-(difluoromethoxy)phenyl]-1H-pyrazol-4-yl}pyrazolo[1,5-a]pyrimidine-3-carboxamide, Tyrosine-protein kinase JAK1
Authors:Lupardus, P.J, Brown, D.
Deposit date:2018-11-27
Release date:2019-04-24
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Discovery of a class of highly potent Janus Kinase 1/2 (JAK1/2) inhibitors demonstrating effective cell-based blockade of IL-13 signaling.
Bioorg.Med.Chem.Lett., 29, 2019
5MQX
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BU of 5mqx by Molmil
NMR solution structure of macro domain from Venezuelan equine encephalitis virus(VEEV) in complex with ADP-ribose
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Non-structural protein3
Authors:Makrynitsa, G.I, Ntonti, D, Marousis, K.D, Matsoukas, M.T, Papageorgiou, N, Coutard, B, Bentrop, D, Spyroulias, G.A.
Deposit date:2016-12-21
Release date:2018-07-04
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Conformational plasticity of the VEEV macro domain is important for binding of ADP-ribose.
J.Struct.Biol., 206, 2019
7T1C
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BU of 7t1c by Molmil
Crystal structure of RUBISCO from Sulfurivirga caldicuralii
Descriptor: Ribulose-bisphosphate carboxylase
Authors:Pereira, J.H, Liu, A.K, Shih, P.M, Adams, P.D.
Deposit date:2021-12-01
Release date:2022-09-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural plasticity enables evolution and innovation of RuBisCO assemblies.
Sci Adv, 8, 2022
6VHL
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BU of 6vhl by Molmil
Paired Helical Filament from Alzheimer's Disease Human Brain Tissue
Descriptor: GLYCINE, Microtubule-associated protein tau
Authors:Arakhamia, T, Lee, C.E, Carlomagno, Y, Duong, D.M, Kundinger, S.R, Wang, K, Williams, D, DeTure, M, Dickson, D.W, Cook, C.N, Seyfried, N.T, Petrucelli, L, Fitzpatrick, A.W.P.
Deposit date:2020-01-10
Release date:2020-03-04
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Posttranslational Modifications Mediate the Structural Diversity of Tauopathy Strains.
Cell, 180, 2020
6PFW
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BU of 6pfw by Molmil
Protein Tyrosine Phosphatase 1B (1-301), T177A mutant, apo state
Descriptor: ACETATE ION, GLYCEROL, Tyrosine-protein phosphatase non-receptor type 1
Authors:Cui, D.S, Lipchock, J.M, Loria, J.P.
Deposit date:2019-06-22
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Uncovering the Molecular Interactions in the Catalytic Loop That Modulate the Conformational Dynamics in Protein Tyrosine Phosphatase 1B.
J.Am.Chem.Soc., 141, 2019
6MX9
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BU of 6mx9 by Molmil
Lysozyme bound to 3-Aminophenol
Descriptor: 1,2-ETHANEDIOL, 3-aminophenol, BENZAMIDINE, ...
Authors:Blackburn, A, Partowmah, S.H, Brennan, H.M, Mestizo, K.E, Stivala, C.D, Petreczky, J, Perez, A, Horn, A, McSweeney, S.
Deposit date:2018-10-30
Release date:2018-12-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A simple technique to improve microcrystals using gel exclusion of nucleation inducing elements
To Be Published
6FIT
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BU of 6fit by Molmil
FHIT-TRANSITION STATE ANALOG
Descriptor: ADENOSINE MONOTUNGSTATE, FRAGILE HISTIDINE TRIAD PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
5N49
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BU of 5n49 by Molmil
BRPF2 in complex with Compound 7
Descriptor: 2-(1,3,6-trimethyl-2-oxidanylidene-benzimidazol-5-yl)benzo[de]isoquinoline-1,3-dione, Bromodomain-containing protein 1
Authors:Bouche, L, Christ, C.D, Siegel, S, Fernandez-Montalvan, A.E, Holton, S.J, Fedorov, O, ter Laak, A, Sugawara, T, Stoeckigt, D, Tallant, C, Bennett, J, Monteiro, O, Saez, L.D, Siejka, P, Meier, J, Puetter, V, Weiske, J, Mueller, S, Huber, K.V.M, Hartung, I.V, Haendler, B.
Deposit date:2017-02-10
Release date:2017-05-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Benzoisoquinolinediones as Potent and Selective Inhibitors of BRPF2 and TAF1/TAF1L Bromodomains.
J. Med. Chem., 60, 2017
7TGM
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BU of 7tgm by Molmil
Crystal structure of HSC-AMS bound DesD, the desferrioxamine synthetase from the Streptomyces griseoflavus ferrimycin biosynthetic pathway
Descriptor: 4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanoic acid, Desferrioxamine synthetase DesD, GLYCEROL, ...
Authors:Patel, K.D, Gulick, A.M.
Deposit date:2022-01-07
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An acyl-adenylate mimic reveals the structural basis for substrate recognition by the iterative siderophore synthetase DesD.
J.Biol.Chem., 298, 2022
8ENX
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BU of 8enx by Molmil
Crystal structure of beta'-COPI-WD40 domain Y33A mutant in complex with SARS-CoV-2 clientized spike tail heptapeptide.
Descriptor: Clientized spike tail heptapeptide, Coatomer subunit beta'
Authors:Dey, D, Hasan, S.S.
Deposit date:2022-09-30
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs.
Nat Commun, 14, 2023
8ENZ
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BU of 8enz by Molmil
Crystal structure of alpha-COPI-WD40 domain K15A mutant.
Descriptor: ACETYL GROUP, Putative coatomer subunit alpha
Authors:Dey, D, Hasan, S.S.
Deposit date:2022-09-30
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs.
Nat Commun, 14, 2023
8ENY
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BU of 8eny by Molmil
Crystal structure of alpha-COPI-WD40 domain R13A mutant.
Descriptor: ACETYL GROUP, Putative coatomer subunit alpha
Authors:Dey, D, Hasan, S.S.
Deposit date:2022-09-30
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs.
Nat Commun, 14, 2023
8ENS
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BU of 8ens by Molmil
Crystal structure of beta'-COPI-WD40 domain in complex with SARS-CoV-2 spike tail hepta-peptide
Descriptor: Coatomer subunit beta', spike tail hepta-peptide
Authors:Dey, D, Hasan, S.S.
Deposit date:2022-09-30
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs.
Nat Commun, 14, 2023
8EO0
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BU of 8eo0 by Molmil
Crystal structure of alpha-COPI WD40 domain R300A mutant.
Descriptor: ACETYL GROUP, Putative coatomer subunit alpha
Authors:Dey, D, Hasan, S.S.
Deposit date:2022-10-01
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs.
Nat Commun, 14, 2023
7NY1
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BU of 7ny1 by Molmil
Structure of the fungal plasma membrane proton pump Pma1 in its auto-inhibited state - hexameric assembly
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Heit, S, Geurts, M.M.G, Murphy, B.J, Corey, R, Mills, D.J, Kuehlbrandt, W, Bublitz, M.
Deposit date:2021-03-19
Release date:2021-11-17
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structure of the hexameric fungal plasma membrane proton pump in its autoinhibited state.
Sci Adv, 7, 2021
7TGJ
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BU of 7tgj by Molmil
Crystal structure of DesD, the desferrioxamine synthetase from the Streptomyces griseoflavus ferrimycin biosynthetic pathway
Descriptor: Desferrioxamine synthetase DesD, GLYCEROL, SULFATE ION
Authors:Patel, K.D, Gulick, A.M.
Deposit date:2022-01-07
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:An acyl-adenylate mimic reveals the structural basis for substrate recognition by the iterative siderophore synthetase DesD.
J.Biol.Chem., 298, 2022
5MZ5
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BU of 5mz5 by Molmil
Crystal structure of aldehyde dehydrogenase 21 (ALDH21) from Physcomitrella patens in its apoform
Descriptor: 1,2-ETHANEDIOL, ALDH21), DI(HYDROXYETHYL)ETHER, ...
Authors:Kopecny, D, Koncitikova, R, Briozzo, P, Morera, S.
Deposit date:2017-01-30
Release date:2017-08-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The ALDH21 gene found in lower plants and some vascular plants codes for a NADP(+) -dependent succinic semialdehyde dehydrogenase.
Plant J., 92, 2017

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PDB entries from 2024-07-31

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