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PDB: 808 results

7MJK
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Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (class 2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab ab1 Heavy Chain, ...
Authors:Zhu, X, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Saville, J.W, Leopold, K, Li, W, Dimitrov, D.S, Tuttle, K.S, Zhou, S, Chittori, S, Subramaniam, S.
Deposit date:2021-04-20
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies.
Plos Biol., 19, 2021
7MJG
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Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhu, X, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Saville, J.W, Leopold, K, Li, W, Dimitrov, D.S, Tuttle, K.S, Zhou, S, Chittori, S, Subramaniam, S.
Deposit date:2021-04-20
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies.
Plos Biol., 19, 2021
7MJM
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Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Saville, J.W, Leopold, K, Li, W, Dimitrov, D.S, Tuttle, K.S, Zhou, S, Chittori, S, Subramaniam, S.
Deposit date:2021-04-20
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies.
Plos Biol., 19, 2021
4UQK
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Electron density map of GluA2em in complex with quisqualate and LY451646
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, GLUTAMATE RECEPTOR 2
Authors:Meyerson, J.R, Kumar, J, Chittori, S, Rao, P, Pierson, J, Bartesaghi, A, Mayer, M.L, Subramaniam, S.
Deposit date:2014-06-24
Release date:2014-08-13
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (16.4 Å)
Cite:Structural Mechanism of Glutamate Receptor Activation and Desensitization
Nature, 514, 2014
1A0F
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CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID
Descriptor: GLUTATHIONE S-TRANSFERASE, GLUTATHIONE SULFONIC ACID
Authors:Nishida, M, Harada, S, Noguchi, S, Inoue, H, Takahashi, K, Satow, Y.
Deposit date:1997-11-29
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Three-dimensional structure of Escherichia coli glutathione S-transferase complexed with glutathione sulfonate: catalytic roles of Cys10 and His106.
J.Mol.Biol., 281, 1998
1B5P
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THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1
Descriptor: PHOSPHATE ION, PROTEIN (ASPARTATE AMINOTRANSFERASE), PYRIDOXAL-5'-PHOSPHATE
Authors:Ura, H, Nakai, T, Kawaguchi, S.I, Miyahara, I, Hirotsu, K, Kuramitsu, S.
Deposit date:1999-01-07
Release date:2003-09-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate recognition mechanism of thermophilic dual-substrate enzyme
J.BIOCHEM.(TOKYO), 130, 2001
7LZ3
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Computational design of constitutively active cGAS
Descriptor: Cyclic GMP-AMP synthase, GLYCEROL, ZINC ION
Authors:Dowling, Q, Volkman, H.E, Gray, E.E, Ovchinnikov, S, Cambier, S, Bera, A.K, Bick, M, Kang, A, Stetson, D.B, King, N.P.
Deposit date:2021-03-08
Release date:2022-03-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Computational design of constitutively active cGAS.
Nat.Struct.Mol.Biol., 30, 2023
4NZH
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A. fumigatus flavin-dependent ornithine monooxygenase R279A mutant
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, L-ornithine, ...
Authors:Robinson, R, Franceschini, S, Sobrado, P.
Deposit date:2013-12-12
Release date:2015-03-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:A. fumigatus flavin-dependent ornithine monooxygenase R279A mutant
To be Published
1AK6
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DESTRIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: DESTRIN
Authors:Hatanaka, H, Moriyama, K, Ogura, K, Ichikawa, S, Yahara, I, Inagaki, F.
Deposit date:1997-05-29
Release date:1997-11-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Tertiary structure of destrin and structural similarity between two actin-regulating protein families.
Cell(Cambridge,Mass.), 85, 1996
1AK7
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DESTRIN, NMR, 20 STRUCTURES
Descriptor: DESTRIN
Authors:Hatanaka, H, Moriyama, K, Ogura, K, Ichikawa, S, Yahara, I, Inagaki, F.
Deposit date:1997-05-29
Release date:1997-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Tertiary structure of destrin and structural similarity between two actin-regulating protein families.
Cell(Cambridge,Mass.), 85, 1996
6LEP
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BU of 6lep by Molmil
Crystal structure of thiosulfate transporter YeeE inactive mutant - C91A
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
Authors:Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Sugano, Y, Takeuchi, A, Uchino, S.
Deposit date:2019-11-26
Release date:2020-09-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
6LEO
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Crystal structure of thiosulfate transporter YeeE from Spirochaeta thermophila
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
Authors:Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Takeuchi, A, Uchino, S, Sugano, Y.
Deposit date:2019-11-26
Release date:2020-09-02
Last modified:2020-09-30
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
4UFQ
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Structure of a novel Hyaluronidase (Hyal_Sk) from Streptomyces koganeiensis.
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Gavira, J.A, Messina, L, Pernagallo, S, Unciti-Broceta, J.D, Conejero-Muriel, M, Diaz-Mochon, J.J, Vaccaro, S, Caruso, S, Musumeci, L, Bisicchia, S, Di Pasquale, R.
Deposit date:2015-03-18
Release date:2016-04-13
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Identification and Characterization of a Bacterial Hyaluronidase and its Production in Recombinant Form.
FEBS Lett., 590, 2016
4UQ6
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Electron density map of GluA2em in complex with LY451646 and glutamate
Descriptor: GLUTAMATE RECEPTOR 2, GLUTAMIC ACID
Authors:Meyerson, J.R, Kumar, J, Chittori, S, Rao, P, Pierson, J, Bartesaghi, A, Mayer, M.L, Subramaniam, S.
Deposit date:2014-06-20
Release date:2014-08-13
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (12.8 Å)
Cite:Structural Mechanism of Glutamate Receptor Activation and Desensitization
Nature, 514, 2014
4UQJ
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Cryo-EM density map of GluA2em in complex with ZK200775
Descriptor: GLUTAMATE RECEPTOR 2, {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid
Authors:Meyerson, J.R, Kumar, J, Chittori, S, Rao, P, Pierson, J, Bartesaghi, A, Mayer, M.L, Subramaniam, S.
Deposit date:2014-06-24
Release date:2014-08-13
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (10.4 Å)
Cite:Structural Mechanism of Glutamate Receptor Activation and Desensitization
Nature, 514, 2014
8UQT
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Crystal structure of the Tree Shrew p53 tetramerization domain
Descriptor: Cellular tumor antigen p53, SULFATE ION
Authors:Wahba, H.M, Sakaguchi, S, Nakagawa, N, Wada, J, Kamada, R, Sakaguchi, K, Omichinski, J.G.
Deposit date:2023-10-24
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties.
Int J Mol Sci, 24, 2023
3O12
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BU of 3o12 by Molmil
The crystal structure of a functionally unknown protein from Saccharomyces cerevisiae.
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Uncharacterized protein YJL217W
Authors:Zhang, R, Tan, K, Xu, X, Cui, H, Chin, S, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-07-20
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of a functionally unknown protein from Saccharomyces cerevisiae.
TO BE PUBLISHED
4RM4
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The crystal structure of the versatile cytochrome P450 enzyme CYP109B1 from Bacillus subtilis
Descriptor: Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Zhouw, W.H, Zhang, A.L, Zhang, T, Hall, E.A, Hutchinson, S, Cryle, M.J, Wong, L.-L, Bell, S.G.
Deposit date:2014-10-18
Release date:2015-02-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.771 Å)
Cite:The crystal structure of the versatile cytochrome P450 enzyme CYP109B1 from Bacillus subtilis.
Mol Biosyst, 11, 2015
7SDZ
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[iU:Hg2+:S] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*(5IU)P*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*(IMC)P*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
Authors:Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
Deposit date:2021-09-29
Release date:2022-10-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (4.51 Å)
Cite:Metal-Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction.
Adv Mater, 2023
7SDL
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[S:Ag+:T] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*(IMC)P*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
Authors:Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
Deposit date:2021-09-29
Release date:2022-10-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (4.37 Å)
Cite:Metal-Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction.
Adv Mater, 2023
7SDK
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[mC:Ag+:S] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*(5CM)P*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*(IMC)P*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
Authors:Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
Deposit date:2021-09-29
Release date:2022-10-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.86 Å)
Cite:Metal-Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction.
Adv Mater, 2023
7SDH
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[S:Ag+:S] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*(IMC)P*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*(IMC)P*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
Authors:Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
Deposit date:2021-09-29
Release date:2022-10-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (4.05 Å)
Cite:Metal-Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction.
Adv Mater, 2023
3LVY
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BU of 3lvy by Molmil
Crystal Structure of Carboxymuconolactone Decarboxylase Family Protein SMU.961 from Streptococcus mutans
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, Carboxymuconolactone decarboxylase family, ...
Authors:Kim, Y, Xu, X, Cui, H, Chin, S, Edwards, A, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-02-22
Release date:2010-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Carboxymuconolactone Decarboxylase Family Protein SMU.961 from Streptococcus mutans
To be Published
4UG0
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STRUCTURE OF THE HUMAN 80S RIBOSOME
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S RIBOSOMAL PROTEIN, ...
Authors:Khatter, H, Myasnikov, A.G, Natchiar, S.K, Klaholz, B.P.
Deposit date:2015-03-20
Release date:2015-06-10
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of the human 80S ribosome
NATURE, 520, 2015
4UQQ
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Electron density map of GluK2 desensitized state in complex with 2S,4R-4-methylglutamate
Descriptor: GLUTAMATE RECEPTOR IONOTROPIC, KAINATE 2, GLUTAMIC ACID
Authors:Meyerson, J.R, Kumar, J, Chittori, S, Rao, P, Pierson, J, Bartesaghi, A, Mayer, M.L, Subramaniam, S.
Deposit date:2014-06-24
Release date:2014-08-13
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Structural Mechanism of Glutamate Receptor Activation and Desensitization
Nature, 514, 2014

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