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PDB: 133 results

1WJA
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SOLUTION STRUCTURE OF THE N-TERMINAL ZN BINDING DOMAIN OF HIV-1 INTEGRASE (D FORM), NMR, REGULARIZED MEAN STRUCTURE
Descriptor: HIV-1 INTEGRASE, ZINC ION
Authors:Clore, G.M, Cai, M, Caffrey, M, Gronenborn, A.M.
Deposit date:1997-05-13
Release date:1998-05-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal zinc binding domain of HIV-1 integrase.
Nat.Struct.Biol., 4, 1997
1WJD
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BU of 1wjd by Molmil
SOLUTION STRUCTURE OF THE N-TERMINAL ZN BINDING DOMAIN OF HIV-1 INTEGRASE (E FORM), NMR, 38 STRUCTURES
Descriptor: HIV-1 INTEGRASE, ZINC ION
Authors:Clore, G.M, Cai, M, Caffrey, M, Gronenborn, A.M.
Deposit date:1997-05-13
Release date:1998-05-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal zinc binding domain of HIV-1 integrase.
Nat.Struct.Biol., 4, 1997
1WJC
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BU of 1wjc by Molmil
SOLUTION STRUCTURE OF THE N-TERMINAL ZN BINDING DOMAIN OF HIV-1 INTEGRASE (E FORM), NMR, REGULARIZED MEAN STRUCTURE
Descriptor: HIV-1 INTEGRASE, ZINC ION
Authors:Clore, G.M, Cai, M, Caffrey, M, Gronenborn, A.M.
Deposit date:1997-05-13
Release date:1998-05-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal zinc binding domain of HIV-1 integrase.
Nat.Struct.Biol., 4, 1997
2Y5M
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BU of 2y5m by Molmil
STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A 7.7 MONOACYLGLYCEROL LIPID CUBIC PHASE.
Descriptor: POLYETHYLENE GLYCOL (N=34), VAL-GRAMICIDIN A
Authors:Hoefer, N, Aragao, D, Caffrey, M.
Deposit date:2011-01-14
Release date:2011-05-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Membrane Protein Crystallization in Lipidic Mesophases. Hosting Lipid Effects on the Crystallization and Structure of a Transmembrane Peptide
Cryst.Growth Des., 11, 2011
2XDC
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BU of 2xdc by Molmil
Structure of linear gramicidin D obtained using Type I crystals grown in a lipid cubic phase.
Descriptor: GRAMICIDIN A, POLYETHYLENE GLYCOL (N=34), SODIUM ION
Authors:Hoefer, N, Aragao, D, Caffrey, M.
Deposit date:2010-04-30
Release date:2010-08-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallizing Transmembrane Peptides in Lipidic Mesophases
Biophys.J., 99, 2010
4NC3
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Crystal structure of the 5-HT2B receptor solved using serial femtosecond crystallography in lipidic cubic phase.
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHOLESTEROL, ...
Authors:Liu, W, Wacker, D, Gati, C, Han, G.W, James, D, Wang, D, Nelson, G, Weierstall, U, Katritch, V, Barty, A, Zatsepin, N.A, Li, D, Messerschmidt, M, Boutet, S, Williams, G.J, Koglin, J.E, Seibert, M.M, Wang, C, Shah, S.T.A, Basu, S, Fromme, R, Kupitz, C, Rendek, K.N, Grotjohann, I, Fromme, P, Kirian, R.A, Beyerlein, K.R, White, T.A, Chapman, H.N, Caffrey, M, Spence, J.C.H, Stevens, R.C, Cherezov, V, GPCR Network (GPCR)
Deposit date:2013-10-23
Release date:2013-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Serial femtosecond crystallography of G protein-coupled receptors.
Science, 342, 2013
2Y6N
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STRUCTURE OF LINEAR GRAMICIDIN D OBTAINED USING TYPE I CRYSTALS GROWN IN A 8.8 MONOACYLGLYCEROL LIPID CUBIC PHASE.
Descriptor: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL, POLYETHYLENE GLYCOL (N=34), VAL-GRAMICIDIN A
Authors:Hoefer, N, Aragao, D, Caffrey, M.
Deposit date:2011-01-25
Release date:2011-05-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Membrane Protein Crystallization in Lipidic Mesophases. Hosting Lipid Effects on the Crystallization and Structure of a Transmembrane Peptide
Cryst.Growth Des., 11, 2011
2YEV
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Structure of caa3-type cytochrome oxidase
Descriptor: (1R,4S,6R)-6-({[2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL]OXY}METHYL)-4-HYDROXY-1-{[(15-METHYLHEXADECANOYL)OXY]METHYL}-4-OXIDO-7-OXO-3,5-DIOXA-8-AZA-4-PHOSPHAHEPTACOS-1-YL 15-METHYLHEXADECANOATE, (2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE, (2R)-3-HYDROXYPROPANE-1,2-DIYL DIHEXADECANOATE, ...
Authors:Lyons, J.A, Aragao, D, Soulimane, T, Caffrey, M.
Deposit date:2011-03-31
Release date:2012-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural Insights Into Electron Transfer in Caa3-Type Cytochrome Oxidases.
Nature, 487, 2012
1N7B
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BU of 1n7b by Molmil
RIP-Radiation-damage Induced Phasing
Descriptor: POTASSIUM ION, RNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3'), SPERMINE
Authors:Ravelli, R.B.G, Leiros, H.-K.S, Pan, B, Caffrey, M, McSweeney, S.
Deposit date:2002-11-13
Release date:2003-03-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Specific Radiation-Damage Can Be Used To Solve Macromolecular Crystal Structures
Structure, 11, 2003
1N6X
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BU of 1n6x by Molmil
RIP-phasing on Bovine Trypsin
Descriptor: BENZYLAMINE, CALCIUM ION, GLYCEROL, ...
Authors:Ravelli, R.B.G, Leiros, H.-K.S, Pan, B, Caffrey, M, McSweeney, S.
Deposit date:2002-11-12
Release date:2003-03-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Specific Radiation-Damage Can Be Used To Solve Macromolecular Crystal Structures
Structure, 11, 2003
1N6Y
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BU of 1n6y by Molmil
RIP-phasing on Bovine Trypsin
Descriptor: BENZYLAMINE, CALCIUM ION, GLYCEROL, ...
Authors:Ravelli, R.B.G, Leiros, H.-K.S, Pan, B, Caffrey, M, McSweeney, S.
Deposit date:2002-11-12
Release date:2003-03-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Specific Radiation-Damage Can Be Used To Solve Macromolecular Crystal Structures
Structure, 11, 2003
1N7A
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BU of 1n7a by Molmil
RIP-Radiation-damage Induced Phasing
Descriptor: POTASSIUM ION, RNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3'), SPERMINE
Authors:Ravelli, R.B.G, Leiros, H.-K.S, Pan, B, Caffrey, M, McSweeney, S.
Deposit date:2002-11-13
Release date:2003-03-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Specific Radiation-Damage Can Be Used To Solve Macromolecular Crystal Structures
Structure, 11, 2003
7ACG
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BU of 7acg by Molmil
In meso structure of the alginate exporter, AlgE, from Pseudomonas aeruginosa in 9.8 monoacylglycerol
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-(2-METHOXYETHOXY)ETHANOL, Alginate biosynthesis protein AlgE, ...
Authors:Smithers, L, van Dalsen, L, Boland, C, Caffrey, M.
Deposit date:2020-09-10
Release date:2020-12-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:9.8 MAG. A new host lipid for in meso (lipid cubic phase) crystallization of integral membrane proteins
Cryst.Growth Des., 2020
7ACI
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BU of 7aci by Molmil
In meso structure of apolipoprotein N-acyltransferase, Lnt, from Escherichia coli in 9.8 monoacylglycerol
Descriptor: Apolipoprotein N-acyltransferase, GLYCEROL, [(2~{S})-2,3-bis(oxidanyl)propyl] heptadec-9-enoate
Authors:Smithers, L, van Dalsen, L, Boland, C, Caffrey, M.
Deposit date:2020-09-10
Release date:2020-12-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:9.8 MAG. A new host lipid for in meso (lipid cubic phase) crystallization of integral membrane proteins
Cryst.Growth Des., 2020
7B0O
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BU of 7b0o by Molmil
In meso structure of the membrane integral lipoprotein intramolecular transacylase Lit from Bacillus cereus in space group P21
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ...
Authors:Huang, C.-Y, Olatunji, S, Olieric, V, Caffrey, M.
Deposit date:2020-11-20
Release date:2021-05-26
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structural basis of the membrane intramolecular transacylase reaction responsible for lyso-form lipoprotein synthesis.
Nat Commun, 12, 2021
7B0P
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BU of 7b0p by Molmil
In meso structure of the membrane integral lipoprotein intramolecular transacylase Lit from Bacillus cereus in space group P21212
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, GLYCEROL, ...
Authors:Huang, C.-Y, Olatunji, S, Olieric, V, Caffrey, M.
Deposit date:2020-11-20
Release date:2021-05-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.935 Å)
Cite:Structural basis of the membrane intramolecular transacylase reaction responsible for lyso-form lipoprotein synthesis.
Nat Commun, 12, 2021
7B0Q
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BU of 7b0q by Molmil
In meso structure of the membrane integral lipoprotein intramolecular transacylase Lit from Bacillus cereus with H85A mutation
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, CITRIC ACID, ...
Authors:Huang, C.-Y, Olatunji, S, Olieric, V, Caffrey, M.
Deposit date:2020-11-20
Release date:2021-05-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Structural basis of the membrane intramolecular transacylase reaction responsible for lyso-form lipoprotein synthesis.
Nat Commun, 12, 2021
7B0R
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BU of 7b0r by Molmil
In meso structure of the membrane integral lipoprotein intramolecular transacylase Lit from Bacillus cereus with H85R mutation
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ...
Authors:Huang, C.-Y, Olatunji, S, Olieric, V, Caffrey, M.
Deposit date:2020-11-20
Release date:2021-05-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of the membrane intramolecular transacylase reaction responsible for lyso-form lipoprotein synthesis.
Nat Commun, 12, 2021
3ZE3
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BU of 3ze3 by Molmil
Crystal structure of the integral membrane diacylglycerol kinase - delta7
Descriptor: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, ACETATE ION, ...
Authors:Li, D, Pye, V.E, Lyons, J.A, Vogeley, L, Aragao, D, Caffrey, M.
Deposit date:2012-12-03
Release date:2013-05-22
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure of the Integral Membrane Diacylglycerol Kinase.
Nature, 497, 2013
3ZE5
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BU of 3ze5 by Molmil
Crystal structure of the integral membrane diacylglycerol kinase - delta4
Descriptor: DIACYLGLYCEROL KINASE
Authors:Li, D, Vogeley, L, Pye, V.E, Lyons, J.A, Aragao, D, Caffrey, M.
Deposit date:2012-12-03
Release date:2013-05-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Crystal Structure of the Integral Membrane Diacylglycerol Kinase.
Nature, 497, 2013
3ZE4
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BU of 3ze4 by Molmil
Crystal structure of the integral membrane diacylglycerol kinase - wild-type
Descriptor: DIACYLGLYCEROL KINASE
Authors:Li, D, Lyons, J.A, Pye, V.E, Vogeley, L, Aragao, D, Caffrey, M.
Deposit date:2012-12-03
Release date:2013-05-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.702 Å)
Cite:Crystal Structure of the Integral Membrane Diacylglycerol Kinase.
Nature, 497, 2013
4BPM
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BU of 4bpm by Molmil
Crystal structure of a human integral membrane enzyme
Descriptor: 2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide, GLUTATHIONE, PROSTAGLANDIN E SYNTHASE, ...
Authors:Li, D, Wang, M, Olieric, V, Caffrey, M.
Deposit date:2013-05-27
Release date:2014-04-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystallizing Membrane Proteins in the Lipidic Mesophase. Experience with Human Prostaglandin E2 Synthase 1 and an Evolving Strategy.
Cryst.Growth Des., 14, 2014
5D6L
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BU of 5d6l by Molmil
beta2AR-T4L - CIM
Descriptor: (2S)-1-(9H-Carbazol-4-yloxy)-3-(isopropylamino)propan-2-ol, 1,4-BUTANEDIOL, ACETAMIDE, ...
Authors:Ma, P, Caffrey, M.
Deposit date:2015-08-12
Release date:2016-08-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The cubicon method for concentrating membrane proteins in the cubic mesophase.
Nat Protoc, 12, 2017
5DIR
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BU of 5dir by Molmil
membrane protein at 2.8 Angstroms
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Globomycin, Lipoprotein signal peptidase
Authors:Vogeley, L, El Arnaout, T, Bailey, J, Boland, C, Caffrey, M.
Deposit date:2015-09-01
Release date:2016-03-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of lipoprotein signal peptidase II action and inhibition by the antibiotic globomycin.
Science, 351, 2016
4ZWJ
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Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser
Descriptor: Chimera protein of human Rhodopsin, mouse S-arrestin, and T4 Endolysin
Authors:Kang, Y, Zhou, X.E, Gao, X, He, Y, Liu, W, Ishchenko, A, Barty, A, White, T.A, Yefanov, O, Han, G.W, Xu, Q, de Waal, P.W, Ke, J, Tan, M.H.E, Zhang, C, Moeller, A, West, G.M, Pascal, B, Eps, N.V, Caro, L.N, Vishnivetskiy, S.A, Lee, R.J, Suino-Powell, K.M, Gu, X, Pal, K, Ma, J, Zhi, X, Boutet, S, Williams, G.J, Messerschmidt, M, Gati, C, Zatsepin, N.A, Wang, D, James, D, Basu, S, Roy-Chowdhury, S, Conrad, C, Coe, J, Liu, H, Lisova, S, Kupitz, C, Grotjohann, I, Fromme, R, Jiang, Y, Tan, M, Yang, H, Li, J, Wang, M, Zheng, Z, Li, D, Howe, N, Zhao, Y, Standfuss, J, Diederichs, K, Dong, Y, Potter, C.S, Carragher, B, Caffrey, M, Jiang, H, Chapman, H.N, Spence, J.C.H, Fromme, P, Weierstall, U, Ernst, O.P, Katritch, V, Gurevich, V.V, Griffin, P.R, Hubbell, W.L, Stevens, R.C, Cherezov, V, Melcher, K, Xu, H.E, GPCR Network (GPCR)
Deposit date:2015-05-19
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.302 Å)
Cite:Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser.
Nature, 523, 2015

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