Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 64936 results

5FFL
DownloadVisualize
BU of 5ffl by Molmil
Crystal structure of mouse CD300lf at 1.6 Angstroms resolution.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CD300 antigen-like family member F, ...
Authors:Nelson, C.A, Fremont, D.H.
Deposit date:2015-12-18
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Discovery of a proteinaceous cellular receptor for a norovirus.
Science, 353, 2016
4V7F
DownloadVisualize
BU of 4v7f by Molmil
Arx1 pre-60S particle.
Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Leidig, C, Thoms, M, Holdermann, I, Bradatsch, B, Berninghausen, O, Bange, G, Sinning, I, Hurt, E, Beckmann, R.
Deposit date:2013-12-10
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle.
Nat Commun, 5, 2014
6QWH
DownloadVisualize
BU of 6qwh by Molmil
The Transcriptional Regulator PrfA-L140H mutant from Listeria Monocytogenes in complex with a 30-bp operator PrfA-box motif
Descriptor: DNA (30-MER), GLYCEROL, Listeriolysin positive regulatory factor A
Authors:Hall, M, Grundstrom, C, Hansen, S, Brannstrom, K, Johansson, J, Sauer-Eriksson, A.E.
Deposit date:2019-03-05
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Novel Growth-Based Selection Strategy Identifies New Constitutively Active Variants of the Major Virulence Regulator PrfA in Listeria monocytogenes.
J.Bacteriol., 202, 2020
4W9R
DownloadVisualize
BU of 4w9r by Molmil
Crystal structure of uncharacterised protein Coch_1243 from Capnocytophaga ochracea DSM 7271
Descriptor: ACETATE ION, GLYCEROL, Uncharacterized protein
Authors:Chang, C, Wu, R, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-08-27
Release date:2014-09-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Crystal structure of uncharacterised protein Coch_1243 from Capnocytophaga ochracea DSM 7271
To Be Published
4WB0
DownloadVisualize
BU of 4wb0 by Molmil
Crystal structure of the broad specificity aminotransferase from Leishmania mexicana
Descriptor: Broad specificity aminotransferase, CACODYLATE ION
Authors:Wen, J, Nowicki, C, Blankenfeldt, W.
Deposit date:2014-09-02
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural basis for the relaxed substrate selectivity of Leishmania mexicana broad specificity aminotransferase.
Mol.Biochem.Parasitol., 202, 2015
1EZR
DownloadVisualize
BU of 1ezr by Molmil
CRYSTAL STRUCTURE OF NUCLEOSIDE HYDROLASE FROM LEISHMANIA MAJOR
Descriptor: CALCIUM ION, NUCLEOSIDE HYDROLASE
Authors:Shi, W, Schramm, V.L, Almo, S.C.
Deposit date:2000-05-11
Release date:2000-05-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nucleoside hydrolase from Leishmania major. Cloning, expression, catalytic properties, transition state inhibitors, and the 2.5-a crystal structure.
J.Biol.Chem., 274, 1999
5J3C
DownloadVisualize
BU of 5j3c by Molmil
Thermus thermophilus 70S termination complex containing E. coli RF1
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Hoffer, E.D, Dunham, C.M.
Deposit date:2016-03-30
Release date:2016-10-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
4USV
DownloadVisualize
BU of 4usv by Molmil
Crystal structure of human soluble Adenylyl Cyclase with pyrophosphate resulting from soaking with ATP and Calcium
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENYLATE CYCLASE TYPE 10, ...
Authors:Kleinboelting, S, Steegborn, C.
Deposit date:2014-07-13
Release date:2014-07-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Analysis of Human Soluble Adenylyl Cyclase and Crystal Structures of its Nucleotide Complexes -Implications for Cyclase Catalysis and Evolution.
FEBS J., 281, 2014
7NV1
DownloadVisualize
BU of 7nv1 by Molmil
Human Pol Kappa holoenzyme with Ub-PCNA
Descriptor: DNA Primer, DNA Template, DNA polymerase kappa, ...
Authors:Lancey, C, De Biasio, A, Hamdan, S.M.
Deposit date:2021-03-15
Release date:2021-11-03
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA.
Nat Commun, 12, 2021
7OGV
DownloadVisualize
BU of 7ogv by Molmil
A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine
Descriptor: DNA (5'-D(*(P*GP*CP*GP*TP*(DH)P*GP*AP*CP*GP*CP*G-3')
Authors:Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M.
Deposit date:2021-05-07
Release date:2021-11-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function.
Plos Comput.Biol., 17, 2021
7NV0
DownloadVisualize
BU of 7nv0 by Molmil
Human Pol Kappa holoenzyme with wt PCNA
Descriptor: DNA Primer, DNA Template, DNA polymerase kappa, ...
Authors:Lancey, C, De Biasio, A, Hamdan, S.M.
Deposit date:2021-03-15
Release date:2021-11-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA.
Nat Commun, 12, 2021
4USZ
DownloadVisualize
BU of 4usz by Molmil
Crystal structure of the first bacterial vanadium dependant iodoperoxidase
Descriptor: SODIUM ION, VANADATE ION, VANADIUM-DEPENDENT HALOPEROXIDASE
Authors:Rebuffet, E, Delage, L, Fournier, J.B, Rzonca, J, Potin, P, Michel, G, Czjzek, M, Leblanc, C.
Deposit date:2014-07-17
Release date:2014-10-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Bacterial Vanadium Iodoperoxidase from the Marine Flavobacteriaceae Zobellia Galactanivorans Reveals Novel Molecular and Evolutionary Features of Halide Specificity in This Enzyme Family.
Appl.Environ.Microbiol., 80, 2014
4UZI
DownloadVisualize
BU of 4uzi by Molmil
Crystal Structure of AauDyP Complexed with Imidazole
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Strittmatter, E, Liers, C, Ullrich, R, Hofrichter, M, Piontek, K, Plattner, D.A.
Deposit date:2014-09-05
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Toolbox of Auricularia Auricula-Judae Dye-Decolorizing Peroxidase - Identification of Three New Potential Substrate-Interaction Sites.
Arch.Biochem.Biophys., 574, 2015
4V1W
DownloadVisualize
BU of 4v1w by Molmil
3D structure of horse spleen apoferritin determined by electron cryomicroscopy
Descriptor: FERRITIN LIGHT CHAIN
Authors:Russo, C.J, Passmore, L.A.
Deposit date:2014-10-02
Release date:2014-12-10
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Electron Microscopy. Ultrastable Gold Substrates for Electron Cryomicroscopy.
Science, 346, 2014
5IWL
DownloadVisualize
BU of 5iwl by Molmil
CD47-diabody complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5F9 diabody, Leukocyte surface antigen CD47, ...
Authors:Di, W, Jude, K.M, Garcia, K.C.
Deposit date:2016-03-22
Release date:2016-06-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:CD47-blocking immunotherapies stimulate macrophage-mediated destruction of small-cell lung cancer.
J.Clin.Invest., 126, 2016
7OJK
DownloadVisualize
BU of 7ojk by Molmil
Lassa virus L protein bound to the distal promoter duplex [DISTAL-PROMOTER]
Descriptor: 3' RNA, 5' RNA, RNA-directed RNA polymerase L, ...
Authors:Kouba, T, Vogel, D, Thorkelsson, S, Quemin, E, Williams, H.M, Milewski, M, Busch, C, Gunther, S, Grunewald, K, Rosenthal, M, Cusack, S.
Deposit date:2021-05-16
Release date:2021-12-01
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity.
Nat Commun, 12, 2021
4W87
DownloadVisualize
BU of 4w87 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from metagenomic library, in complex with a xyloglucan oligosaccharide
Descriptor: MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4WE6
DownloadVisualize
BU of 4we6 by Molmil
The crystal structure of hemagglutinin HA1 domain from influenza virus A/Perth/142/2007(H3N2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Hemagglutinin HA1 chain
Authors:Yang, H, Carney, P.J, Chang, J.C, Guo, Z, Villanueva, J.M, Stevens, J.
Deposit date:2014-09-09
Release date:2015-02-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Structure and receptor binding preferences of recombinant human A(H3N2) virus hemagglutinins.
Virology, 477C, 2015
6WQH
DownloadVisualize
BU of 6wqh by Molmil
Molecular basis for the ATPase-powered substrate translocation by the Lon AAA+ protease
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Ig2 substrate, Lon protease, ...
Authors:Zhang, K, Li, S, Hsiehb, K, Sub, S, Pintilie, G, Chiu, W, Chang, C.
Deposit date:2020-04-28
Release date:2021-06-09
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular basis for ATPase-powered substrate translocation by the Lon AAA+ protease.
J.Biol.Chem., 297, 2021
7OB9
DownloadVisualize
BU of 7ob9 by Molmil
Cryo-EM structure of human RNA Polymerase I in elongation state
Descriptor: DNA non-template strand, DNA template strand, DNA-directed RNA polymerase I subunit RPA1, ...
Authors:Misiaszek, A.D, Girbig, M, Mueller, C.W.
Deposit date:2021-04-21
Release date:2021-12-08
Last modified:2021-12-22
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structures of human RNA polymerase I.
Nat.Struct.Mol.Biol., 28, 2021
1F7A
DownloadVisualize
BU of 1f7a by Molmil
HOW DOES A SYMMETRIC DIMER RECOGNIZE AN ASYMMETRIC SUBSTRATE? A SUBSTRATE COMPLEX OF HIV-1 PROTEASE.
Descriptor: ACETATE ION, CA-P2 SUBSTRATE, POL POLYPROTEIN
Authors:Schiffer, C.A.
Deposit date:2000-06-26
Release date:2001-06-27
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:How does a symmetric dimer recognize an asymmetric substrate? A substrate complex of HIV-1 protease.
J.Mol.Biol., 301, 2000
1F7L
DownloadVisualize
BU of 1f7l by Molmil
HOLO-(ACYL CARRIER PROTEIN) SYNTHASE IN COMPLEX WITH COENZYME A AT 1.5A
Descriptor: CALCIUM ION, CHLORIDE ION, COENZYME A, ...
Authors:Parris, K.D, Lin, L, Tam, A, Mathew, R, Hixon, J, Stahl, M, Fritz, C.C, Seehra, J, Somers, W.S.
Deposit date:2000-06-27
Release date:2001-06-27
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of substrate binding to Bacillus subtilis holo-(acyl carrier protein) synthase reveal a novel trimeric arrangement of molecules resulting in three active sites.
Structure Fold.Des., 8, 2000
7OGF
DownloadVisualize
BU of 7ogf by Molmil
GTPase HRAS mutant D33K under 900 MPa pressure
Descriptor: GTPase HRas, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ...
Authors:Colloc'h, N.C, Girard, E, Prange, T, Kalbitzer, H.R.
Deposit date:2021-05-06
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Equilibria between conformational states of the Ras oncogene protein revealed by high pressure crystallography.
Chem Sci, 13, 2022
3C5L
DownloadVisualize
BU of 3c5l by Molmil
Polo-like kinase 1 Polo box domain in complex with PPHSpT peptide
Descriptor: Peptide, Serine/threonine-protein kinase PLK1
Authors:Lim, D.C, Yaffe, M.B.
Deposit date:2008-01-31
Release date:2009-02-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structural and functional analyses of minimal phosphopeptides targeting the polo-box domain of polo-like kinase 1.
Nat.Struct.Mol.Biol., 16, 2009
7OGA
DownloadVisualize
BU of 7oga by Molmil
GTPase HRAS under 200 MPa pressure
Descriptor: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Colloc'h, N.C, Kalbitzer, H.R, Girard, E, Prange, T.
Deposit date:2021-05-06
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Equilibria between conformational states of the Ras oncogene protein revealed by high pressure crystallography.
Chem Sci, 13, 2022

221051

数据于2024-06-12公开中

PDB statisticsPDBj update infoContact PDBjnumon