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PDB: 97 results

1AFX
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BU of 1afx by Molmil
UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES
Descriptor: RNA (5'-R(*GP*GP*UP*GP*UP*GP*AP*AP*CP*AP*CP*C)-3')
Authors:Butcher, S.E, Dieckmann, T, Feigon, J.
Deposit date:1997-03-15
Release date:1997-05-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1B36
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BU of 1b36 by Molmil
SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES
Descriptor: RNA (RNA LOOP B)
Authors:Butcher, S.E, Dieckmann, T, Feigon, J.
Deposit date:1998-12-17
Release date:1998-12-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the loop B domain from the hairpin ribozyme.
Nat.Struct.Biol., 6, 1999
1TLR
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BU of 1tlr by Molmil
SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES
Descriptor: RNA TETRALOOP RECEPTOR (5'-R(GGCCUAAGACUUCGGUUAUGGCC)-3')
Authors:Butcher, S.E, Dieckmann, T, Feigon, J.
Deposit date:1997-09-11
Release date:1997-11-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a GAAA tetraloop receptor RNA.
EMBO J., 16, 1997
6PPP
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BU of 6ppp by Molmil
Structure of S. pombe Lsm2-8 with processed U6 snRNA
Descriptor: Mimic of processed U6 snRNA, Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, ...
Authors:Montemayor, E.J, Butcher, S.E.
Deposit date:2019-07-08
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Rna, 26, 2020
1SY4
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BU of 1sy4 by Molmil
Refined solution structure of the S. cerevisiae U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS)
Descriptor: U6 Intramolecular Stem-Loop RNA
Authors:Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E.
Deposit date:2004-03-31
Release date:2004-04-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification.
RNA, 9, 2003
7Z51
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BU of 7z51 by Molmil
Tick-borne encephalitis virus Kuutsalo-14
Descriptor: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Pulkkinen, L.I.A, Barrass, S.V, Anastasina, M, Butcher, S.J.
Deposit date:2022-03-07
Release date:2022-04-20
Last modified:2022-05-04
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular Organisation of Tick-Borne Encephalitis Virus.
Viruses, 14, 2022
8PPQ
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BU of 8ppq by Molmil
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, Protein prM
Authors:Anastasina, M, Domanska, A, Pulkkinen, L.I.A, Butcher, S.J.
Deposit date:2023-07-07
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
To Be Published
7MKT
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BU of 7mkt by Molmil
Crystal structure of r(GU)11G-NMM complex
Descriptor: N-METHYLMESOPORPHYRIN, POTASSIUM ION, RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*G)-3')
Authors:Bingman, C.A, Roschdi, S, Nomura, Y, Butcher, S.E.
Deposit date:2021-04-26
Release date:2022-11-02
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:An atypical RNA quadruplex marks RNAs as vectors for gene silencing.
Nat.Struct.Mol.Biol., 29, 2022
5MJV
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BU of 5mjv by Molmil
Rebuild and re-refined model for Human Parechovirus 1
Descriptor: CAPSID SUBUNIT VP0, CAPSID SUBUNIT VP1, CAPSID SUBUNIT VP3, ...
Authors:Shakeel, S, Dykeman, E.C, White, S.J, Ora, A, Cockburn, J.J.B, Butcher, S.J, Stockley, P.G, Twarock, R.
Deposit date:2016-12-01
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Genomic RNA folding mediates assembly of human parechovirus.
Nat Commun, 8, 2017
5E4V
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BU of 5e4v by Molmil
Crystal structure of measles N0-P complex
Descriptor: Nucleoprotein,Phosphoprotein
Authors:Guryanov, S.G, Liljeroos, L, Kasaragod, P, Kajander, T, Butcher, S.J.
Deposit date:2015-10-07
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystal Structure of the Measles Virus Nucleoprotein Core in Complex with an N-Terminal Region of Phosphoprotein.
J.Virol., 90, 2015
8TNS
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BU of 8tns by Molmil
Solution structure of poly(UG) RNA (GU)12 G-quadruplex
Descriptor: RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*U)-3')
Authors:Escobar, C.A, Petersen, R, Butcher, S.E.
Deposit date:2023-08-02
Release date:2023-11-15
Last modified:2024-05-15
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution Structure of Poly(UG) RNA.
J.Mol.Biol., 435, 2023
6ASO
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BU of 6aso by Molmil
Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Montemayor, E.J, Brow, D.A, Butcher, S.E.
Deposit date:2017-08-25
Release date:2018-05-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.
Nat Commun, 9, 2018
6RJF
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BU of 6rjf by Molmil
Echovirus 1 intact particle
Descriptor: PALMITIC ACID, VP1, VP2, ...
Authors:Domanska, A, Ruokolainen, V.P, Pelliccia, M, Laajala, M.A, Marjomaki, V.S, Butcher, S.J.
Deposit date:2019-04-26
Release date:2019-06-12
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Extracellular Albumin and Endosomal Ions Prime Enterovirus Particles for Uncoating That Can Be Prevented by Fatty Acid Saturation.
J.Virol., 93, 2019
5APM
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BU of 5apm by Molmil
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Descriptor: VP0, VP1, VP3
Authors:Shakeel, S, Westerhuis, B.M, Domanska, A, Koning, R.I, Matadeen, R, Koster, A.J, Bakker, A.Q, Beaumont, T, Wolthers, K.C, Butcher, S.J.
Deposit date:2015-09-17
Release date:2016-07-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Multiple Capsid-Stabilizing Interactions Revealed in a High-Resolution Structure of an Emerging Picornavirus Causing Neonatal Sepsis
Nat.Commun., 7, 2016
5TF6
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BU of 5tf6 by Molmil
Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core
Descriptor: CHLORIDE ION, GLYCEROL, POTASSIUM ION, ...
Authors:Montemayor, E.J, Brow, D.A, Butcher, S.E.
Deposit date:2016-09-24
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.
Acta Crystallogr D Struct Biol, 73, 2017
3J2J
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BU of 3j2j by Molmil
Empty coxsackievirus A9 capsid
Descriptor: Protein VP1, Protein VP2, Protein VP3
Authors:Shakeel, S, Seitsonen, J.J.T, Kajander, T, Laurinmaki, P, Hyypia, T, Susi, P, Butcher, S.J.
Deposit date:2012-10-04
Release date:2013-07-17
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.54 Å)
Cite:Structural and functional analysis of coxsackievirus A9 integrin {alpha}v{beta}6 binding and uncoating.
J.Virol., 87, 2013
4BIQ
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BU of 4biq by Molmil
Homology model of coxsackievirus A7 (CAV7) empty capsid proteins.
Descriptor: VP1, VP2, VP3
Authors:Seitsonen, J.J.T, Shakeel, S, Susi, P, Pandurangan, A.P, Sinkovits, R.S, Hyvonen, H, Laurinmaki, P, Yla-Pelto, J, Topf, M, Hyypia, T, Butcher, S.J.
Deposit date:2013-04-12
Release date:2013-10-02
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.09 Å)
Cite:Combined Approaches to Flexible Fitting and Assessment in Virus Capsids Undergoing Conformational Change.
J.Struct.Biol., 185, 2014
4UDF
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BU of 4udf by Molmil
STRUCTURAL BASIS OF HUMAN PARECHOVIRUS NEUTRALIZATION BY HUMAN MONOCLONAL ANTIBODIES
Descriptor: HUMAN MONOCLONAL ANTIBODY, Protein VP0, Protein VP3
Authors:Shakeel, S, Westerhuis, B.M, Ora, A, Koen, G, Bakker, A.Q, Claassen, Y, Beaumont, T, Wolthers, K.C, Butcher, S.J.
Deposit date:2014-12-10
Release date:2015-07-22
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Structural Basis of Human Parechovirus Neutralization by Human Monoclonal Antibodies.
J. Virol., 89, 2015
4BIP
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BU of 4bip by Molmil
Homology model of coxsackievirus A7 (CAV7) full capsid proteins.
Descriptor: VP1, VP2, VP3
Authors:Seitsonen, J.J.T, Shakeel, S, Susi, P, Pandurangan, A.P, Sinkovits, R.S, Hyvonen, H, Laurinmaki, P, Yla-Pelto, J, Topf, M, Hyypia, T, Butcher, S.J.
Deposit date:2013-04-12
Release date:2013-10-02
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.23 Å)
Cite:Combined Approaches to Flexible Fitting and Assessment in Virus Capsids Undergoing Conformational Change.
J.Struct.Biol., 185, 2014
4N0T
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BU of 4n0t by Molmil
Core structure of the U6 small nuclear ribonucleoprotein at 1.7 Angstrom resolution
Descriptor: SULFATE ION, U4/U6 snRNA-associated-splicing factor PRP24, U6 snRNA
Authors:Montemayor, E.J, Curran, E.C, Liao, H, Andrews, K.L, Treba, C.N, Butcher, S.E, Brow, D.A.
Deposit date:2013-10-02
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Core structure of the U6 small nuclear ribonucleoprotein at 1.7- angstrom resolution.
Nat.Struct.Mol.Biol., 21, 2014
8AXX
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BU of 8axx by Molmil
Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Domanska, A, Plavec, Z, Ruokolainen, V, Loflund, B, Marjomaki, V.S, Butcher, S.J.
Deposit date:2022-09-01
Release date:2022-10-19
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release.
J.Virol., 96, 2022
6ZCK
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BU of 6zck by Molmil
Coxsackievirus B4 in complex with capsid binder compound 48
Descriptor: 4-[(6-propoxynaphthalen-2-yl)sulfonylamino]benzoic acid, Capsid protein VP1, Capsid protein VP2, ...
Authors:Flatt, J.W, Domanska, A, Butcher, S.J.
Deposit date:2020-06-11
Release date:2021-03-17
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses.
Commun Biol, 4, 2021
8AW6
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BU of 8aw6 by Molmil
Expanded Coxsackievirus A9 after 0.01% faf-BSA treatment
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Domanska, A, Plavec, Z, Ruokolainen, V, Loflund, B, Marjomaki, V.S, Butcher, S.J.
Deposit date:2022-08-29
Release date:2022-10-26
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release.
J.Virol., 96, 2022
8AT5
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BU of 8at5 by Molmil
native Coxsackievirus A9
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Domanska, A, Plavec, Z, Ruokolainen, V, Marjomaki, V.S, Butcher, S.J.
Deposit date:2022-08-22
Release date:2022-11-16
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release.
J.Virol., 96, 2022
6GZV
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BU of 6gzv by Molmil
Identification of a druggable VP1-VP3 interprotomer pocket in the capsid of enteroviruses
Descriptor: 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid, Capsid protein VP1, Capsid protein VP2, ...
Authors:Geraets, J.A, Flatt, J.W, Domanska, A, Butcher, S.J.
Deposit date:2018-07-05
Release date:2019-06-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4 Å)
Cite:A novel druggable interprotomer pocket in the capsid of rhino- and enteroviruses.
Plos Biol., 17, 2019

 

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