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PDB: 116 results

9DTZ
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BU of 9dtz by Molmil
SARS-CoV-2 Mpro in complex with compound 5
Descriptor: 3C-like proteinase nsp5, N-[(2S)-3-cyclopropyl-1-({(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]-4-methoxy-1H-indole-2-carboxamide, SODIUM ION
Authors:Bigelow, L, Tang, H, Boguslaw, N, Duda, D.M.
Deposit date:2024-10-02
Release date:2025-04-30
Last modified:2025-08-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Inhibition of dimeric SARS-CoV-2 Mpro displays positive cooperativity and a mixture of covalent and non-covalent binding.
Iscience, 28, 2025
9DU4
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BU of 9du4 by Molmil
SARS-CoV-2 Mpro in complex with compound 3
Descriptor: 3C-like proteinase nsp5, N-[(2S)-3-cyclopropyl-1-{[(2R)-1-hydroxy-4-(methanesulfonyl)butan-2-yl]amino}-1-oxopropan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Bigelow, L, Tang, H, Boguslaw, N, Duda, D.M.
Deposit date:2024-10-02
Release date:2025-04-30
Last modified:2025-08-06
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Inhibition of dimeric SARS-CoV-2 Mpro displays positive cooperativity and a mixture of covalent and non-covalent binding.
Iscience, 28, 2025
9DU3
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BU of 9du3 by Molmil
SARS-CoV-2 Mpro in complex with compound 1
Descriptor: 3C-like proteinase nsp5, N-[(2S)-3-cyclopropyl-1-({(2R)-1-hydroxy-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Bigelow, L, Tang, H, Boguslaw, N, Duda, D.M.
Deposit date:2024-10-02
Release date:2025-04-30
Last modified:2025-08-06
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Inhibition of dimeric SARS-CoV-2 Mpro displays positive cooperativity and a mixture of covalent and non-covalent binding.
Iscience, 28, 2025
9DU2
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BU of 9du2 by Molmil
SARS-CoV-2 Mpro in complex with compound 7
Descriptor: 3C-like proteinase nsp5, N-[(2S)-3-cyclopropyl-1-{[(1Z,2S)-1-imino-4-(methanesulfonyl)butan-2-yl]amino}-1-oxopropan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Bigelow, L, Tang, H, Boguslaw, N, Duda, D.M.
Deposit date:2024-10-02
Release date:2025-04-30
Last modified:2025-08-06
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Inhibition of dimeric SARS-CoV-2 Mpro displays positive cooperativity and a mixture of covalent and non-covalent binding.
Iscience, 28, 2025
3M05
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BU of 3m05 by Molmil
The crystal structure of a functionally unknown protein PEPE_1480 from Pediococcus pentosaceus ATCC 25745
Descriptor: SULFATE ION, uncharacterized protein PEPE_1480
Authors:Tan, K, Bigelow, L, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-03-02
Release date:2010-03-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.145 Å)
Cite:The crystal structure of a functionally unknown protein PEPE_1480 from Pediococcus pentosaceus ATCC 25745
To be Published
4GCN
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BU of 4gcn by Molmil
N-terminal domain of stress-induced protein-1 (STI-1) from C.elegans
Descriptor: Protein STI-1, TRIETHYLENE GLYCOL
Authors:Osipiuk, J, Bigelow, L, Gu, M, Van Oosten-Hawle, P, Morimoto, R.I, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-07-30
Release date:2012-08-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:N-terminal domain of stress-induced protein-1 (STI-1) from C.elegans
To be Published
2OX6
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BU of 2ox6 by Molmil
Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1
Descriptor: Hypothetical protein SO3848, MAGNESIUM ION
Authors:Zhang, R, Bigelow, L, Giuliani, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-02-19
Release date:2007-04-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of gene product SO3848 from Shewanella oneidensis MR-1
To be Published
5K0M
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BU of 5k0m by Molmil
Targeting the PRC2 complex through a novel protein-protein interaction inhibitor of EED
Descriptor: (3R,4S)-1-[(1S)-7-fluoro-2,3-dihydro-1H-inden-1-yl]-N,N-dimethyl-4-{4-[4-(methylsulfonyl)piperazin-1-yl]phenyl}pyrrolidin-3-amine, Polycomb protein EED
Authors:Jakob, C.G, Bigelow, L.J, Zhu, H, Sun, C.
Deposit date:2016-05-17
Release date:2017-01-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:The EED protein-protein interaction inhibitor A-395 inactivates the PRC2 complex.
Nat. Chem. Biol., 13, 2017
2P0T
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BU of 2p0t by Molmil
Structural Genomics, the crystal structure of a conserved putative protein from Pseudomonas syringae pv. tomato str. DC3000
Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, UPF0307 protein PSPTO_4464
Authors:Tan, K, Bigelow, L, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-03-01
Release date:2007-04-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:The crystal structure of a conserved putative protein from Pseudomonas syringae pv. tomato str. DC3000
To be Published
9Y12
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BU of 9y12 by Molmil
Crystal Structure of N-Acetyl Transferase Domain-Containing Protein from Bacteroides fragilis
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Acetyltransferase (GNAT) family protein, ...
Authors:Kim, Y, Bigelow, L, Clancy, L, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2025-08-29
Release date:2025-09-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of N-Acetyl Transferase Domain-Containing Protein from Bacteroides fragilis
To Be Published
5KCK
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BU of 5kck by Molmil
Crystal structure of anthranilate synthase component I from Streptococcus pneumoniae TIGR4
Descriptor: Anthranilate synthase component I, GLYCEROL
Authors:Chang, C, Michalska, K, Bigelow, L, Jedrzejczak, R, ANDERSON, W.F, JOACHIMIAK, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-06-06
Release date:2016-06-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of anthranilate synthase component I from Streptococcus pneumoniae TIGR4
To Be Published
7LAW
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BU of 7law by Molmil
crystal structure of GITR complex with GITR-L
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor ligand superfamily member 18, Tumor necrosis factor receptor superfamily member 18
Authors:Longenecker, K.L, Rogers, B, Bigelow, L, Judge, R.A, Alvarez, H.
Deposit date:2021-01-07
Release date:2022-03-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.752 Å)
Cite:An anti-PD-1-GITR-L bispecific agonist induces GITR clustering-mediated T cell activation for cancer immunotherapy.
Nat Cancer, 3, 2022
6QKY
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BU of 6qky by Molmil
Tryptophan synthase subunit alpha from Streptococcus pneumoniae with 3D domain swap in the core of TIM barrel
Descriptor: ACETIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Michalska, K, Kowiel, M, Bigelow, L, Endres, M, Gilski, M, Jaskolski, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-01-30
Release date:2019-03-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:3D domain swapping in the TIM barrel of the alpha subunit of Streptococcus pneumoniae tryptophan synthase.
Acta Crystallogr D Struct Biol, 76, 2020
6AZY
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BU of 6azy by Molmil
Crystal structure of Hsp104 R328M/R757M mutant from Calcarisporiella thermophila
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Heat shock protein Hsp104
Authors:Michalska, K, Bigelow, L, Hatzos-Skintges, C, Jedrzejczak, R, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2017-09-13
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Calcarisporiella thermophila Hsp104 Disaggregase that Antagonizes Diverse Proteotoxic Misfolding Events.
Structure, 27, 2019
5I2H
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BU of 5i2h by Molmil
Crystal structure of O-methyltransferase family 2 protein Plim_1147 from Planctomyces limnophilus DSM 3776 complex with Apigenin
Descriptor: 1,2-ETHANEDIOL, 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one, FORMIC ACID, ...
Authors:Chang, C, Duke, N, Bigelow, L, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2016-02-08
Release date:2016-03-02
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Crystal structure of O-methyltransferase family 2 protein Plim_1147 from Planctomyces limnophilus DSM 3776 complex with Apigenin.
To Be Published
3IPJ
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BU of 3ipj by Molmil
The crystal structure of one domain of the PTS system, IIabc component from Clostridium difficile
Descriptor: PTS system, IIabc component, ZINC ION
Authors:Zhang, R, Bigelow, L, Cobb, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-08-17
Release date:2009-10-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The crystal structure of one domain of the PTS system, IIabc component from Clostridium difficile
To be Published
5KIN
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BU of 5kin by Molmil
Crystal structure of tryptophan synthase alpha beta complex from Streptococcus pneumoniae
Descriptor: GLYCEROL, Tryptophan synthase alpha chain, Tryptophan synthase beta chain
Authors:Chang, C, Michalska, K, Bigelow, L, Jedrzejczak, R, ANDERSON, W.F, JOACHIMIAK, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-06-16
Release date:2016-07-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Conservation of the structure and function of bacterial tryptophan synthases.
Iucrj, 6, 2019
3ILX
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BU of 3ilx by Molmil
Crystal structure of First ORF in transposon ISC1904 from Sulfolobus solfataricus P2
Descriptor: First ORF in transposon ISC1904, GLYCEROL
Authors:Chang, C, Bigelow, L, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-08-07
Release date:2009-08-25
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of First ORF in transposon ISC1904 from Sulfolobus solfataricus P2
To be Published
3ISR
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BU of 3isr by Molmil
The Crystal Structure of a Putative Cysteine Protease from Cytophaga hutchinsonii to 1.9A
Descriptor: Transglutaminase-like enzymes, putative cysteine protease
Authors:Stein, A.J, Bigelow, L, Trevino, D, Buck, K, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-08-27
Release date:2009-09-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of a Putative Cysteine Protease from Cytophaga hutchinsonii to 1.9A
To be Published
5DU2
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BU of 5du2 by Molmil
Structural analysis of EspG2 glycosyltransferase
Descriptor: EspG2 glycosyltransferase
Authors:Michalska, K, Elshahawi, S.I, Bigelow, L, Babnigg, G, Thorson, J.S, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2015-09-18
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural analysis of EspG2 glycosyltransferase
To Be Published
6E6J
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BU of 6e6j by Molmil
BRD2_Bromodomain2 complex with inhibitor 744
Descriptor: Bromodomain-containing protein 2, N-ethyl-4-[2-(4-fluoro-2,6-dimethylphenoxy)-5-(2-hydroxypropan-2-yl)phenyl]-6-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-2-carboxamide
Authors:Longenecker, K.L, Park, C.H, Bigelow, L.
Deposit date:2018-07-25
Release date:2019-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Selective inhibition of the BD2 bromodomain of BET proteins in prostate cancer.
Nature, 578, 2020
6ONY
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BU of 6ony by Molmil
BRD2_Bromodomain1 complex with inhibitor 744
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 2, N-ethyl-4-[2-(4-fluoro-2,6-dimethylphenoxy)-5-(2-hydroxypropan-2-yl)phenyl]-6-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-2-carboxamide
Authors:Longenecker, K.L, Bigelow, L.
Deposit date:2019-04-22
Release date:2020-01-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Selective inhibition of the BD2 bromodomain of BET proteins in prostate cancer.
Nature, 578, 2020
4GCO
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BU of 4gco by Molmil
Central domain of stress-induced protein-1 (STI-1) from C.elegans
Descriptor: Protein STI-1
Authors:Osipiuk, J, Bigelow, L, Gu, M, Van Oosten-Hawle, P, Morimoto, R.I, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-07-30
Release date:2012-08-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Central domain of stress-induced protein-1 (STI-1) from C.elegans
To be Published
6NTR
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BU of 6ntr by Molmil
Crystal Structure of Beta-barrel-like Protein of Domain of Unknown Function DUF1849 from Brucella abortus
Descriptor: 1,2-ETHANEDIOL, ATP/GTP-binding site-containing protein A, GLYCEROL
Authors:Kim, Y, Bigelow, L, Endres, M, Babnigg, G, Crosson, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2019-01-30
Release date:2019-02-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:BrucellaPeriplasmic Protein EipB Is a Molecular Determinant of Cell Envelope Integrity and Virulence.
J.Bacteriol., 201, 2019
2R5R
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BU of 2r5r by Molmil
The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718
Descriptor: IMIDAZOLE, PHOSPHATE ION, UPF0343 protein NE1163
Authors:Tan, K, Wu, R, Nocek, B, Bigelow, L, Patterson, S, Freeman, L, Bargassa, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-09-04
Release date:2007-09-18
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718.
To be Published

246704

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