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PDB: 119 件
3H76
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BU of 3h76 by Molmil
Crystal structure of PqsD, a key enzyme in Pseudomonas aeruginosa quinolone signal biosynthesis pathway
分子名称: PQS biosynthetic enzyme
著者Bera, A.K, Atanasova, V, Parsons, J.F.
登録日2009-04-24
公開日2009-09-15
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of PqsD, a Pseudomonas quinolone signal biosynthetic enzyme, in complex with anthranilate.
Biochemistry, 48, 2009
3HGV
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BU of 3hgv by Molmil
Structure of Phenazine Antibiotic Biosynthesis Protein
分子名称: EhpF
著者Bera, A.K, Atanasova, V, Parsons, J.F.
登録日2009-05-14
公開日2010-04-28
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the D-alanylgriseoluteic acid biosynthetic protein EhpF, an atypical member of the ANL superfamily of adenylating enzymes.
Acta Crystallogr. D Biol. Crystallogr., 66, 2010
6BP1
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BU of 6bp1 by Molmil
Crystal structure of human KRAS A59G mutant in complex with GCP
分子名称: GTPase KRas, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
著者Bera, A.K, Lu, J, Westover, K.D.
登録日2017-11-21
公開日2018-01-24
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献KRAS Switch Mutants D33E and A59G Crystallize in the State 1 Conformation.
Biochemistry, 57, 2018
7MWR
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BU of 7mwr by Molmil
Structure of De Novo designed beta sheet heterodimer LHD101A53/B4
分子名称: LHD101A54, LHD101B4, MALONATE ION
著者Bera, A.K, Sahtoe, D.D, Kang, A, Praetorius, F, Baker, D.
登録日2021-05-17
公開日2022-01-19
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Reconfigurable asymmetric protein assemblies through implicit negative design.
Science, 375, 2022
7MWQ
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BU of 7mwq by Molmil
Structure of De Novo designed beta sheet heterodimer LHD29A53/B53
分子名称: LHD29A53, LHD29B53
著者Bera, A.K, Sahtoe, D.D, Kang, A, Praetorius, F, Baker, D.
登録日2021-05-17
公開日2022-01-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Reconfigurable asymmetric protein assemblies through implicit negative design.
Science, 375, 2022
6BOF
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BU of 6bof by Molmil
Crystal structure of KRAS A146T-GDP demonstrating open switch 1 conformation
分子名称: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE
著者Bera, A.K, Yan, W, Westover, K.D.
登録日2017-11-20
公開日2019-05-22
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.401 Å)
主引用文献Tissue-Specific Oncogenic Activity of KRASA146T.
Cancer Discov, 9, 2019
6WHO
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BU of 6who by Molmil
Histone deacetylases complex with peptide macrocycles
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Histone deacetylase 2, SODIUM ION, ...
著者Bera, A.K, Hosseinzadeh, P, Watson, P, Baker, D.
登録日2020-04-08
公開日2021-04-21
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Nat Commun, 12, 2021
6WHN
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BU of 6whn by Molmil
Histone deacetylases complex with peptide macrocycles
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, DI(HYDROXYETHYL)ETHER, Histone deacetylase 2, ...
著者Bera, A.K, Hosseinzadeh, P, Watson, P, Baker, D.
登録日2020-04-08
公開日2021-04-21
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Nat Commun, 12, 2021
6WHQ
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Histone deacetylases complex with peptide macrocycles
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Histone deacetylase 2, SODIUM ION, ...
著者Bera, A.K, Hosseinzadeh, P, Watson, P, Baker, D.
登録日2020-04-08
公開日2021-04-21
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Nat Commun, 12, 2021
6WHZ
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Histone deacetylases complex with peptide macrocycles
分子名称: Histone deacetylase 2, SODIUM ION, TETRAETHYLENE GLYCOL, ...
著者Bera, A.K, Hosseinzadeh, P, Watson, P, Baker, D.
登録日2020-04-08
公開日2021-04-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Nat Commun, 12, 2021
6WI3
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BU of 6wi3 by Molmil
Histone deacetylases complex with peptide macrocycles
分子名称: (SHA)W(DTH)DN(DSN)(DME)(DAS)K peptide macrocycle, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Histone deacetylase 2, ...
著者Bera, A.K, Hosseinzadeh, P, Watson, P, Baker, D.
登録日2020-04-08
公開日2021-04-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Nat Commun, 12, 2021
6WMK
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BU of 6wmk by Molmil
Crystal structure of beta sheet heterodimer LHD29
分子名称: Beta sheet heterodimer LHD29 - Chain A, Beta sheet heterodimer LHD29 - Chain B
著者Bera, A.K, Sahtoe, D.D, Kang, A, Sankaran, B, Baker, D.
登録日2020-04-21
公開日2021-11-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Reconfigurable asymmetric protein assemblies through implicit negative design.
Science, 375, 2022
6X9Z
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BU of 6x9z by Molmil
De novo design of transmembrane beta-barrels
分子名称: Transmembrane beta-barrels
著者Bera, A.K, Vorobieva, A.A, Kang, A.S, Baker, D.
登録日2020-06-03
公開日2021-02-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献De novo design of transmembrane beta barrels.
Science, 371, 2021
6XI6
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BU of 6xi6 by Molmil
Hierarchical design of multi-scale protein complexes by combinatorial assembly of oligomeric helical bundle and repeat protein building blocks
分子名称: helical fusion design
著者Bera, A.K, Hsia, Y, Kang, A.S, Shankaran, B, Baker, D.
登録日2020-06-19
公開日2021-06-02
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
6XH5
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BU of 6xh5 by Molmil
Hierarchical design of multi-scale protein complexes by combinatorial assembly of oligomeric helical bundle and repeat protein building blocks
分子名称: helical fusion design
著者Bera, A.K, Hsia, Y, Kang, A.S, Baker, D.
登録日2020-06-18
公開日2021-06-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.32 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
8E1E
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BU of 8e1e by Molmil
Scaffolding protein functional sites using deep learning
分子名称: SG122_C3
著者Bera, A.K, Gerben, S, Baker, D.
登録日2022-08-10
公開日2023-08-16
実験手法X-RAY DIFFRACTION (4.27 Å)
主引用文献Design of Diverse Asymmetric Pockets in De Novo Homo-oligomeric Proteins.
Biochemistry, 62, 2023
8DT0
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BU of 8dt0 by Molmil
Scaffolding protein functional sites using deep learning
分子名称: Scaffolding protein functional sites
著者Bera, A.K, Watson, J, Baker, D.
登録日2022-07-24
公開日2022-08-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Scaffolding protein functional sites using deep learning.
Science, 377, 2022
8EK4
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BU of 8ek4 by Molmil
De novo designed ice-binding proteins from twist-constrained helices
分子名称: Ice-binding protein TIP-99a
著者Bera, A.K, De Haas, R.J.
登録日2022-09-19
公開日2023-07-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献De novo designed ice-binding proteins from twist-constrained helices.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EOX
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BU of 8eox by Molmil
Precisely patterned nanofibers made from extendable protein multiplexes
分子名称: C4HR1_4r
著者Bera, A.K, Bethel, N.P.
登録日2022-10-04
公開日2023-08-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Precisely patterned nanofibres made from extendable protein multiplexes.
Nat.Chem., 15, 2023
8EVM
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BU of 8evm by Molmil
De novo design of chlorophyll special pair containing protein assemblies
分子名称: Chlorophyll dimer protein designs, Special Pair 3 (SP3x)
著者Bera, A.K, Ennist, N.M.
登録日2022-10-20
公開日2024-05-15
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献De novo design of proteins housing excitonically coupled chlorophyll special pairs.
Nat.Chem.Biol., 20, 2024
8FIQ
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BU of 8fiq by Molmil
Multi-state design of two-state switchable hinge proteins
分子名称: cs207AB
著者Bera, A.K, Leung, P.J.Y, Baker, D.
登録日2022-12-16
公開日2023-08-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Design of stimulus-responsive two-state hinge proteins.
Science, 381, 2023
8FVT
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BU of 8fvt by Molmil
Multi-state design of two-state switchable hinge proteins
分子名称: 3hb12
著者Bera, A.K, Broerman, A, Baker, D.
登録日2023-01-19
公開日2023-08-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.07 Å)
主引用文献Design of stimulus-responsive two-state hinge proteins.
Science, 381, 2023
8FIN
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BU of 8fin by Molmil
Multi-state design of two-state switchable hinge proteins
分子名称: cs207A
著者Bera, A.K, Leung, P.J.Y, Baker, D.
登録日2022-12-16
公開日2023-08-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Design of stimulus-responsive two-state hinge proteins.
Science, 381, 2023
8FIH
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BU of 8fih by Molmil
Multi-state design of two-state switchable hinge proteins
分子名称: 3hb05, PHOSPHATE ION
著者Bera, A.K, Broerman, A, Baker, D.
登録日2022-12-16
公開日2023-08-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Design of stimulus-responsive two-state hinge proteins.
Science, 381, 2023
8FIT
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BU of 8fit by Molmil
Multi-state design of two-state switchable hinge proteins
分子名称: cs074A
著者Bera, A.K, Praetorius, F, Baker, D.
登録日2022-12-16
公開日2023-08-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Design of stimulus-responsive two-state hinge proteins.
Science, 381, 2023

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