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PDB: 89472 results

7QZH
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BU of 7qzh by Molmil
SFX structure of dye-type peroxidase DtpB D152A variant in the ferric state
Descriptor: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
Deposit date:2022-01-31
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
7VVN
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BU of 7vvn by Molmil
PTH-bound human PTH1R in complex with Gs (class4)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7QZE
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BU of 7qze by Molmil
SFX structure of dye-type peroxidase DtpB D152A variant in the ferryl state
Descriptor: Dyp-type peroxidase family, MAGNESIUM ION, OXYGEN ATOM, ...
Authors:Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
Deposit date:2022-01-31
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
4YSZ
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BU of 4ysz by Molmil
Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide
Descriptor: 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide, Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Harada, S, Shiba, T, Sato, D, Yamamoto, A, Nagahama, M, Yone, A, Inaoka, D.K, Sakamoto, K, Inoue, M, Honma, T, Kita, K.
Deposit date:2015-03-17
Release date:2015-08-05
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria
Int J Mol Sci, 16, 2015
6D1B
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BU of 6d1b by Molmil
Crystal structure of NDM-1 complexed with compound 2
Descriptor: ACETATE ION, Metallo-beta-lactamase type 2, ZINC ION, ...
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2018-04-11
Release date:2019-04-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
8HY5
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BU of 8hy5 by Molmil
Structure of D-amino acid oxidase mutant R38H
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, D-amino-acid oxidase, ...
Authors:Khan, S, Upadhyay, S, Dave, U, Kumar, A, Gomes, J.
Deposit date:2023-01-05
Release date:2023-01-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mechanistic insights into ALS patient derived mutations in D-amino acid oxidase.
Int.J.Biol.Macromol., 256, 2023
1PPZ
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BU of 1ppz by Molmil
Trypsin complexes at atomic and ultra-high resolution
Descriptor: SULFATE ION, Trypsin
Authors:Schmidt, A, Jelsch, C, Rypniewski, W, Lamzin, V.S.
Deposit date:2003-06-17
Release date:2003-11-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Trypsin Revisited: CRYSTALLOGRAPHY AT (SUB) ATOMIC RESOLUTION AND QUANTUM CHEMISTRY REVEALING DETAILS OF CATALYSIS.
J.Biol.Chem., 278, 2003
2VE4
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BU of 2ve4 by Molmil
Substrate free cyanobacterial CYP120A1
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, PUTATIVE CYTOCHROME P450 120
Authors:Kuhnel, K, Ke, N, Sligar, S.G, Schuler, M.A, Schlichting, I.
Deposit date:2007-10-16
Release date:2008-04-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of Substrate-Free and Retinoic Acid-Bound Cyanobacterial Cytochrome P450 Cyp120A1.
Biochemistry, 47, 2008
6D1H
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BU of 6d1h by Molmil
Crystal structure of NDM-1 complexed with compound 11
Descriptor: ACETATE ION, Metallo-beta-lactamase type 2, ZINC ION, ...
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2018-04-11
Release date:2019-04-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
7VVK
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BU of 7vvk by Molmil
PTH-bound human PTH1R in complex with Gs (class1)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
4YUB
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BU of 4yub by Molmil
Crystal structure of human Nicotinic Acid Phosphoribosyltransferase
Descriptor: Nicotinate phosphoribosyltransferase
Authors:Garavaglia, S, Rizzi, M, Marletta, A.S.
Deposit date:2015-03-18
Release date:2015-05-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of human nicotinic acid phosphoribosyltransferase.
Febs Open Bio, 5, 2015
5IER
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BU of 5ier by Molmil
Structure of a computationally designed 17-OHP binder
Descriptor: (9beta)-17-hydroxypregn-4-ene-3,20-dione, OHP9, SODIUM ION, ...
Authors:Stoddard, B.L, Doyle, L.A.
Deposit date:2016-02-25
Release date:2017-03-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Sampling and energy evaluation challenges in ligand binding protein design.
Protein Sci., 26, 2017
6VM7
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BU of 6vm7 by Molmil
SILv44 T cell receptor bound to HLA-A2 presenting gp100 peptide (ITDQVPFSV)
Descriptor: Beta-2-microglobulin, GLYCEROL, MHC class I antigen, ...
Authors:Smith, A.R, Baker, B.M.
Deposit date:2020-01-27
Release date:2021-01-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structurally silent peptide anchor modifications allosterically modulate T cell recognition in a receptor-dependent manner
Proc.Natl.Acad.Sci.USA, 118, 2021
2VHG
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BU of 2vhg by Molmil
Crystal Structure of the ISHp608 Transposase in Complex with Right End 31-mer DNA
Descriptor: MANGANESE (II) ION, RIGHT END 31-MER, TRANSPOSASE ORFA
Authors:Barabas, O, Ronning, D.R, Guynet, C, Hickman, A.B, Ton-Hoang, B, Chandler, M, Dyda, F.
Deposit date:2007-11-21
Release date:2008-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection.
Cell(Cambridge,Mass.), 132, 2008
4YTK
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BU of 4ytk by Molmil
Structure of the KOW1-Linker1 domain of Transcription Elongation Factor Spt5
Descriptor: Transcription elongation factor SPT5
Authors:Meyer, P.A, Li, S, Zhang, M, Yamada, K, Takagi, Y, Hartzog, G.A, Fu, J.
Deposit date:2015-03-17
Release date:2015-08-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.0904 Å)
Cite:Structures and Functions of the Multiple KOW Domains of Transcription Elongation Factor Spt5.
Mol.Cell.Biol., 35, 2015
7QZG
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BU of 7qzg by Molmil
SFX structure of dye-type peroxidase DtpB N245A variant in the ferric state
Descriptor: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
Deposit date:2022-01-31
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
4NFK
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BU of 4nfk by Molmil
Crystal structure of human FPPS in complex with nickel, JDS05120, and sulfate
Descriptor: Farnesyl pyrophosphate synthase, NICKEL (II) ION, SULFATE ION, ...
Authors:Park, J, De schutter, J.W, Tsantrizos, Y.S, Berghuis, A.M.
Deposit date:2013-10-31
Release date:2014-12-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystallographic and thermodynamic characterization of phenylaminopyridine bisphosphonates binding to human farnesyl pyrophosphate synthase.
PLoS ONE, 12, 2017
3MKG
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BU of 3mkg by Molmil
Low pH as-isolated tomato chloroplast superoxide dismutase
Descriptor: Superoxide dismutase [Cu-Zn], chloroplastic, ZINC ION
Authors:Galaleldeen, A, Taylor, A.B, Hart, P.J.
Deposit date:2010-04-14
Release date:2011-05-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biophysical properties of tomato chloroplast sod
To be Published
6SJY
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BU of 6sjy by Molmil
Diaminobutyrate acetyltransferase EctA from Paenibacillus lautus in complex with its product ADABA
Descriptor: (2~{S})-4-acetamido-2-azanyl-butanoic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ...
Authors:Richter, A.A, Kobus, S, Czech, L, Hoeppner, A, Bremer, E, Smits, S.H.J.
Deposit date:2019-08-14
Release date:2020-01-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The architecture of the diaminobutyrate acetyltransferase active site provides mechanistic insight into the biosynthesis of the chemical chaperone ectoine.
J.Biol.Chem., 295, 2020
7VVM
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BU of 7vvm by Molmil
PTH-bound human PTH1R in complex with Gs (class3)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
5TSQ
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BU of 5tsq by Molmil
Crystal structure of IUnH from Leishmania braziliensis in complex with D-Ribose
Descriptor: CALCIUM ION, IUnH, beta-D-ribofuranose
Authors:Bachega, J.F.R, Timmers, L.F.S.M, Dalberto, P.F, Martinelli, L, Pinto, A.F.M, Basso, L.A, Norberto de Souza, O, Santos, D.S.
Deposit date:2016-10-31
Release date:2016-12-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Crystal structure of IUnH from Leishmania braziliensis in complex with D-Ribose
To Be Published
7LVP
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BU of 7lvp by Molmil
Cryptococcus neoformans AIR synthetase
Descriptor: 1,2-ETHANEDIOL, AIR synthase, GLYCINE, ...
Authors:Chua, S.M.H, Luo, Z, Lim, B.Y.J, Kobe, B, Fraser, J.A.
Deposit date:2021-02-26
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural features of Cryptococcus neoformans bifunctional GAR/AIR synthetase may present novel antifungal drug targets.
J.Biol.Chem., 297, 2021
4O2I
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BU of 4o2i by Molmil
The crystal structure of non-LEE encoded type III effector C from Citrobacter rodentium
Descriptor: Non-LEE encoded type III effector C, ZINC ION
Authors:Chang, C, Xu, X, Cui, H, Savchenko, A, Adkins, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Deposit date:2013-12-17
Release date:2014-01-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of non-LEE encoded type III effector C from Citrobacter rodentium
To be Published
6VOP
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BU of 6vop by Molmil
Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Escherichia coli
Descriptor: Aldolase
Authors:Stogios, P.J, Evdokimova, E, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-01-31
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Escherichia coli
To Be Published
6SLK
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BU of 6slk by Molmil
Diaminobutyrate acetyltransferase EctA from Paenibacillus lautus
Descriptor: L-2,4-diaminobutyric acid acetyltransferase, SODIUM ION, SULFATE ION
Authors:Richter, A.A, Kobus, S, Czech, L, Hoeppner, A, Bremer, E, Smits, S.H.J.
Deposit date:2019-08-20
Release date:2020-01-29
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The architecture of the diaminobutyrate acetyltransferase active site provides mechanistic insight into the biosynthesis of the chemical chaperone ectoine.
J.Biol.Chem., 295, 2020

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