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PDB: 88608 results

1TKH
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BU of 1tkh by Molmil
Streptomyces griseus aminopeptidase complexed with D-Phenylalanine
Descriptor: Aminopeptidase, CALCIUM ION, D-PHENYLALANINE, ...
Authors:Reiland, V, Gilboa, R, Spungin-Bialik, A, Schomburg, D, Shoham, Y, Blumberg, S, Shoham, G.
Deposit date:2004-06-08
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Interactions of D Amino Acids with Streptomyces griseus Aminopeptidase
To be Published
7TF1
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BU of 7tf1 by Molmil
Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) Q484I spike protein (focused refinement of RBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhu, X, Saville, J.W, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-01-06
Release date:2022-03-30
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants.
Nat Commun, 13, 2022
5KHR
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BU of 5khr by Molmil
Model of human Anaphase-promoting complex/Cyclosome complex (APC15 deletion mutant) in complex with the E2 UBE2C/UBCH10 poised for ubiquitin ligation to substrate (APC/C-CDC20-substrate-UBE2C)
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ...
Authors:VanderLinden, R, Yamaguchi, M, Dube, P, Haselbach, D, Stark, H, Schulman, B.A.
Deposit date:2016-06-15
Release date:2016-08-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Cryo-EM of Mitotic Checkpoint Complex-Bound APC/C Reveals Reciprocal and Conformational Regulation of Ubiquitin Ligation.
Mol.Cell, 63, 2016
7TF4
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BU of 7tf4 by Molmil
Cryo-EM structure of SARS-CoV-2 Kappa (B.1.617.1) spike protein (focused refinement of RBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhu, X, Saville, J.W, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Zhou, S, Tuttle, K.S, Subramaniam, S.
Deposit date:2022-01-06
Release date:2022-03-30
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structural and biochemical rationale for enhanced spike protein fitness in delta and kappa SARS-CoV-2 variants.
Nat Commun, 13, 2022
7AG0
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BU of 7ag0 by Molmil
Complex between the bone morphogenetic protein 2 and its antagonist Noggin
Descriptor: Bone morphogenetic protein 2, GLYCEROL, Noggin
Authors:Robert, C, Bruck, F, Herman, R, Vandevenne, M, Filee, P, Kerff, F, Matagne, A.
Deposit date:2020-09-21
Release date:2022-04-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.104 Å)
Cite:Structural analysis of the interaction between human cytokine BMP-2 and the antagonist Noggin reveals molecular details of cell chondrogenesis inhibition.
J.Biol.Chem., 299, 2023
5JOL
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BU of 5jol by Molmil
Calcium-free EF-hand domain of L-plastin
Descriptor: Plastin-2
Authors:Ishida, H, Jensen, K.V, Woodman, A.G, Hyndman, M.E, Vogel, H.J.
Deposit date:2016-05-02
Release date:2017-04-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Calcium-Dependent Switch Helix of L-Plastin Regulates Actin Bundling.
Sci Rep, 7, 2017
7ZTW
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BU of 7ztw by Molmil
Crystal Structure of Human Parechovirus 1 2A protein
Descriptor: ACETATE ION, Protein 2A, SODIUM ION
Authors:von Castelmur, E, Perrakis, A.
Deposit date:2022-05-11
Release date:2023-05-24
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Human Parechovirus 1 2A protein
To Be Published
3EI3
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BU of 3ei3 by Molmil
Structure of the hsDDB1-drDDB2 complex
Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2, TETRAETHYLENE GLYCOL
Authors:Scrima, A, Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
6J5C
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BU of 6j5c by Molmil
Louping ill virus envelope protein
Descriptor: Envelope protein E
Authors:Yang, X, Qi, J, Peng, R, Dai, L, Gould, E.A, Tien, P, Gao, G.F.
Deposit date:2019-01-10
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Molecular Basis of a Protective/Neutralizing Monoclonal Antibody Targeting Envelope Proteins of both Tick-Borne Encephalitis Virus and Louping Ill Virus.
J. Virol., 93, 2019
4RHC
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BU of 4rhc by Molmil
Crystal structure of 3-Dehydroquinate dehydratase from Acinetobacter baumannii at 2.68 A resolution
Descriptor: 3-dehydroquinate dehydratase
Authors:Iqbal, N, Singh, A, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2014-10-01
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Crystal structure of 3-Dehydroquinate dehydratase from Acinetobacter baumannii at 2.68 A resolution
TO BE PUBLISHED
5KO4
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BU of 5ko4 by Molmil
Bromodomain from Trypanosoma brucei Tb427.10.8150
Descriptor: Putative uncharacterized protein, SULFATE ION
Authors:El Bakkouri, M, Walker, J.R, Hou, C.F.D, Lin, Y.H, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Hui, R, Structural Genomics Consortium (SGC)
Deposit date:2016-06-29
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Bromodomain from Trypanosoma brucei Tb427.10.8150
To be published
8A2G
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BU of 8a2g by Molmil
Crystal structure of Sebokelevirus 2A2 protein
Descriptor: 1,2-ETHANEDIOL, 2A2 protein, TETRAETHYLENE GLYCOL
Authors:Zhu, L, Von Castelmur, E, Whang, X, Ren, J, Fry, E, Perrakis, A, Stuart, D.I.
Deposit date:2022-06-03
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural plasticity of 2A proteins in the Parechovirus family
to be published
1TM6
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BU of 1tm6 by Molmil
NMR Structure of the Free Zinc Binding C-terminal Domain of SecA
Descriptor: Preprotein translocase secA subunit, ZINC ION
Authors:Matousek, W.M, Alexandrescu, A.T.
Deposit date:2004-06-10
Release date:2004-10-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of the C-terminal domain of SecA in the free state
Biochim.Biophys.Acta, 1702, 2004
6J9M
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BU of 6j9m by Molmil
NmeBH+AcrIIC2
Descriptor: AcrIIC2, CRISPR-associated endonuclease Cas9
Authors:Zhu, Y.L, Gao, A, Serganov, A, Gao, P.
Deposit date:2019-01-23
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.394 Å)
Cite:Diverse Mechanisms of CRISPR-Cas9 Inhibition by Type IIC Anti-CRISPR Proteins.
Mol. Cell, 74, 2019
7T1T
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BU of 7t1t by Molmil
JAK2 JH2 IN COMPLEX WITH JAK292
Descriptor: (2S)-2-[({4-[(2-amino-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy]phenyl}carbamoyl)amino]-4-phenylbutanoic acid, GLYCEROL, Tyrosine-protein kinase JAK2
Authors:Ippolito, J.A, Henry, S, Krimmer, S.G, Schlessinger, J, Jorgensen, W.L.
Deposit date:2021-12-02
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Conversion of a False Virtual Screen Hit into Selective JAK2 JH2 Domain Binders Using Convergent Design Strategies
Acs Med.Chem.Lett., 13, 2022
4R6K
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BU of 4r6k by Molmil
Crystal structure of ABC transporter substrate-binding protein YesO from Bacillus subtilis, TARGET EFI-510761, an open conformation
Descriptor: SODIUM ION, SOLUTE-BINDING PROTEIN
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Siedel, R.D, Hillerich, B, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-08-25
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of transporter Yeso from Bacillus subtilis, Target Efi-510761
To be Published
4RI4
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BU of 4ri4 by Molmil
Crystal structure of PTPN3 (PTPH1) Y676I mutant in complex with vanadate
Descriptor: Tyrosine-protein phosphatase non-receptor type 3, VANADATE ION
Authors:Chen, K.-E, Meng, T.C, Wang, A.H.-J.
Deposit date:2014-10-05
Release date:2015-03-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.596 Å)
Cite:Substrate specificity and plasticity of FERM-containing protein tyrosine phosphatases.
Structure, 23, 2015
6IYL
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BU of 6iyl by Molmil
The structure of EntE with 3-cyanobenzoyl adenylate analog
Descriptor: 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex, 5'-O-[(3-cyanobenzene-1-carbonyl)sulfamoyl]adenosine
Authors:Miyanaga, A, Ishikawa, F.
Deposit date:2018-12-17
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:An Engineered Aryl Acid Adenylation Domain with an Enlarged Substrate Binding Pocket.
Angew.Chem.Int.Ed.Engl., 58, 2019
7TEC
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BU of 7tec by Molmil
Structure of the Listeria monocytogenes GlnR-DNA complex to 3.45 Angstrom
Descriptor: DNA (5'-D(*CP*GP*TP*GP*TP*CP*AP*GP*AP*TP*AP*AP*TP*CP*TP*GP*AP*CP*AP*CP*G)-3'), HTH-type transcriptional regulator GlnR
Authors:Schumacher, M.A, Brennan, R.G.
Deposit date:2022-01-04
Release date:2022-06-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Molecular dissection of the glutamine synthetase-GlnR nitrogen regulatory circuitry in Gram-positive bacteria.
Nat Commun, 13, 2022
5KZK
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BU of 5kzk by Molmil
Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti
Descriptor: COBALT (II) ION, Probable RNA methyltransferase, TrmH family, ...
Authors:Dey, D, Hegde, R.P, Almo, S.C, Ramakumar, S, Ramagopal, U.A, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2016-07-25
Release date:2017-08-02
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti
To Be Published
6J90
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BU of 6j90 by Molmil
Crystal Structure of GyraseB N-Terminal Domain complex with ATP from Salmonella Typhi at 2.2A Resolution
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kaur, G, Sachdeva, E, Tiwari, P, Gupta, D, Ethayathulla, A.S, Kaur, P.
Deposit date:2019-01-21
Release date:2020-01-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of GyraseB N-Terminal Domain complex with ATP from Salmonella Typhi at 2.2A Resolution
To Be Published
4RWH
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BU of 4rwh by Molmil
Crystal structure of T cell costimulatory ligand B7-1 (CD80)
Descriptor: T-lymphocyte activation antigen CD80
Authors:Fedorov, A.A, Fedorov, E.V, Samanta, D, Hillerich, B, Seidel, R.D, Almo, S.C.
Deposit date:2014-12-04
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Crystal structure of T cell costimulatory ligand B7-1 (CD80)
To be Published
7TAW
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BU of 7taw by Molmil
Cryo-EM structure of the Csy-AcrIF24-promoter DNA dimer
Descriptor: AcrIF24, CRISPR type I-F/YPEST-associated protein Csy2, CRISPR type I-F/YPEST-associated protein Csy3, ...
Authors:Mukherjee, I.A, Chang, L.
Deposit date:2021-12-21
Release date:2022-09-21
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of AcrIF24 as an anti-CRISPR protein and transcriptional suppressor.
Nat.Chem.Biol., 18, 2022
4S2U
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BU of 4s2u by Molmil
Crystal structure of the Phosphorybosylpyrophosphate synthetase from E. Coli
Descriptor: MAGNESIUM ION, Ribose-phosphate pyrophosphokinase
Authors:Timofeev, V.I, Abramchik, Y.A, Muravieva, T.I, Iaroslavtceva, A.K, Stepanenko, V.N, Zhukhlistova, N.E, Esipov, R.S, Kuranova, I.P.
Deposit date:2015-01-23
Release date:2016-01-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystal structure of the Phosphorybosylpyrophosphate synthetase from E. Coli
To be Published
1TLE
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BU of 1tle by Molmil
LE (LAMININ-TYPE EGF-LIKE) MODULE GIII4 IN SOLUTION AT PH 3.5 AND 290 K, NMR, 14 STRUCTURES
Descriptor: LAMININ
Authors:Baumgartner, R, Czisch, M, Mayer, U, Schl, E.P, Huber, R, Timpl, R, Holak, T.A.
Deposit date:1996-01-26
Release date:1997-02-12
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structure of the nidogen binding LE module of the laminin gamma1 chain in solution.
J.Mol.Biol., 257, 1996

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數據於2024-07-24公開中

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