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PDB: 89472 results

9CYR
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Crystal structure of D245G mutant human PTP1B (PTPN1) at room temperature (298 K)
Descriptor: BETA-MERCAPTOETHANOL, MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Ebrahim, A, Perdikari, A, Woods, V.A, Lawler, K, Bounds, R, Singh, N.I, Mehlman, T, Riley, B.T, Sharma, S, Morris, J.W, Keogh, J.M, Henning, E, Smith, M, Farooqi, I.S, Keedy, D.A.
Deposit date:2024-08-02
Release date:2024-08-21
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of human PTP1B variants reveal allosteric sites to target for weight loss therapy.
Biorxiv, 2024
6GRP
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BU of 6grp by Molmil
Crystal Structure Of Human Transthyretin in complex with 3,5,6-trichloro-2-pyridinol (TC2P)
Descriptor: 3,5,6-trichloro-2-pyridinol, SODIUM ION, Transthyretin
Authors:Grundstrom, C, Zhang, J, Olofsson, A, Andersson, P.L, Sauer-Eriksson, A.E.
Deposit date:2018-06-12
Release date:2018-07-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Interspecies Variation between Fish and Human Transthyretins in Their Binding of Thyroid-Disrupting Chemicals.
Environ. Sci. Technol., 52, 2018
3V8B
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BU of 3v8b by Molmil
Crystal Structure of a 3-ketoacyl-ACP reductase from Sinorhizobium meliloti 1021
Descriptor: Putative dehydrogenase, possibly 3-oxoacyl-[acyl-carrier protein] reductase
Authors:Kumaran, D, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, Lafleur, J, Seidel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2011-12-22
Release date:2012-01-11
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of a 3-ketoacyl-ACP reductase from Sinorhizobium meliloti 1021
To be Published
9B70
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Cryo-EM structure of MraY in complex with analogue 2
Descriptor: (2~{S},3~{S})-3-[(2~{S},3~{R},4~{S},5~{R})-5-(aminomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-2-[[3-[[[(2~{S})-6-azanyl-2-(hexadecanoylamino)hexanoyl]amino]methyl]phenyl]methylamino]-3-[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]propanoic acid, MraYAA nanobody, Phospho-N-acetylmuramoyl-pentapeptide-transferase
Authors:Hao, A, Lee, S.-Y.
Deposit date:2024-03-26
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Development of a natural product optimization strategy for inhibitors against MraY, a promising antibacterial target.
Nat Commun, 15, 2024
5OB4
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BU of 5ob4 by Molmil
NMR spatial structure of HER2 TM domain dimer in DPC micelles.
Descriptor: Receptor tyrosine-protein kinase erbB-2
Authors:Mineev, K.S, Arseniev, A.S.
Deposit date:2017-06-26
Release date:2017-11-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:NMR relaxation parameters of methyl groups as a tool to map the interfaces of helix-helix interactions in membrane proteins.
J. Biomol. NMR, 69, 2017
5A49
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BU of 5a49 by Molmil
Crystal structure of the LOTUS domain (aa 139-222) of Drosophila Oskar in C222
Descriptor: MATERNAL EFFECT PROTEIN OSKAR
Authors:Jeske, M, Glatt, S, Ephrussi, A, Mueller, C.W.
Deposit date:2015-06-05
Release date:2015-07-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:The Crystal Structure of the Drosophila Germline Inducer Oskar Identifies Two Domains with Distinct Vasa Helicase-and RNA-Binding Activities.
Cell Rep., 12, 2015
3M3H
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BU of 3m3h by Molmil
1.75 Angstrom resolution crystal structure of an orotate phosphoribosyltransferase from Bacillus anthracis str. 'Ames Ancestor'
Descriptor: CHLORIDE ION, Orotate phosphoribosyltransferase
Authors:Halavaty, A.S, Shuvalova, L, Minasov, G, Winsor, J, Dubrovska, I, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-03-09
Release date:2010-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:1.75 Angstrom resolution crystal structure of an orotate phosphoribosyltransferase from Bacillus anthracis str. 'Ames Ancestor'
To be Published
9B34
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BU of 9b34 by Molmil
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Descriptor: CALCIUM ION, Concanavalin A, ZINC ION
Authors:Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
Deposit date:2024-03-18
Release date:2024-05-22
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Kainate receptor channel opening and gating mechanism.
Nature, 630, 2024
9FB2
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BU of 9fb2 by Molmil
Gcase in complex with small molecule inhibitor 1
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Tisi, D, Cleasby, A.
Deposit date:2024-05-11
Release date:2024-07-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Fragment-Based Discovery of a Series of Allosteric-Binding Site Modulators of beta-Glucocerebrosidase.
J.Med.Chem., 67, 2024
9BNQ
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BU of 9bnq by Molmil
N-(4-(isothiocyanatomethyl)phenyl)methanesulfonamide complexed with Macrophage Migration Inhibitory Factor
Descriptor: ISOPROPYL ALCOHOL, Macrophage migration inhibitory factor, N-{[4-(methanesulfonamido)phenyl]methyl}methanethioamide, ...
Authors:Fellner, M, Rutledge, M.T, Putha, L, Kok, L.K, Gamble, A.B, Wilbanks, S.M, Vernall, A.J, Tyndall, J.D.A.
Deposit date:2024-05-02
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Covalent isothiocyanate inhibitors of macrophage migration inhibitory factor as potential colorectal cancer treatments.
Chemmedchem, 2024
5DK9
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BU of 5dk9 by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a phenylamino-substituted ethyl triaryl-ethylene derivative 4,4'-{2-[3-(phenylamino)phenyl]but-1-ene-1,1-diyl}diphenol
Descriptor: 4,4'-{2-[3-(phenylamino)phenyl]but-1-ene-1,1-diyl}diphenol, Estrogen receptor, Nuclear receptor coactivator 2
Authors:Nwachukwu, J.C, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
Deposit date:2015-09-03
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
1JJX
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BU of 1jjx by Molmil
Solution Structure of Recombinant Human Brain-type Fatty acid Binding Protein
Descriptor: BRAIN-TYPE FATTY ACID BINDING PROTEIN
Authors:Rademacher, M, Zimmerman, A.W, Rueterjans, H, Veerkamp, J.H, Luecke, C.
Deposit date:2001-07-10
Release date:2002-10-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of fatty acid-binding protein from human brain.
Mol.Cell.Biochem., 239, 2002
9AT3
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BU of 9at3 by Molmil
Crystal structure of SARS-CoV-2 3CL protease in complex with an ethylcyclohexyl 2-pyrrolidone inhibitor
Descriptor: (1R,2S)-2-{[N-({[(2S)-1-(2-cyclohexylethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-{[N-({[(2S)-1-(2-cyclohexylethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5, ...
Authors:Lovell, S, Cooper, A, Battaile, K.P, Dampalla, C.S, Groutas, W.C.
Deposit date:2024-02-26
Release date:2024-07-10
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-Guided Design of Potent Coronavirus Inhibitors with a 2-Pyrrolidone Scaffold: Biochemical, Crystallographic, and Virological Studies.
J.Med.Chem., 67, 2024
5KSH
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BU of 5ksh by Molmil
Crystal structure of penicillin-binding protein 2 from Neisseria gonorrhoeae containing an A501T mutation associated with cephalosporin resistance
Descriptor: GLYCEROL, Penicillin-binding protein 2, SULFATE ION
Authors:Fedarovich, A, Davies, C.
Deposit date:2016-07-08
Release date:2017-03-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Alanine 501 Mutations in Penicillin-Binding Protein 2 from Neisseria gonorrhoeae: Structure, Mechanism, and Effects on Cephalosporin Resistance and Biological Fitness.
Biochemistry, 56, 2017
4L1J
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BU of 4l1j by Molmil
Three dimensional structure of mutant D143A of human HD domain-containing protein 2, Northeast Structural Genomics Consortium (NESG) Target HR6723
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, DI(HYDROXYETHYL)ETHER, HD domain-containing protein 2, ...
Authors:Kuzin, A, Su, M, Yakunin, A, Beloglazova, O, Seetharaman, J, Maglaqui, M, Xiao, R, Lee, D, Brown, G, Flick, R, Everett, J.K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-06-03
Release date:2013-06-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.824 Å)
Cite:Three dimensional structure of mutant D143A of human HD domain-containing protein 2, Northeast Structural Genomics Consortium (NESG) Target HR6723
To be Published
8YT4
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BU of 8yt4 by Molmil
Structure of Aquifex aeolicus Lumazine Synthase by Cryo-Electron Microscopy to 1.42 Angstrom Resolution
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase, PHOSPHATE ION
Authors:Savva, C.G, Sobhy, M.A, De Biasio, A, Hamdan, S.M.
Deposit date:2024-03-24
Release date:2024-04-10
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (1.42 Å)
Cite:Structure of Aquifex aeolicus lumazine synthase by cryo-electron microscopy to 1.42 angstrom resolution.
Iucrj, 11, 2024
5ZZ1
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BU of 5zz1 by Molmil
Probing the active center of catalase-phenol oxidase from Scytalidium thermophilum
Descriptor: 3-AMINO-1,2,4-TRIAZOLE, CALCIUM ION, CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, ...
Authors:Yuzugullu Karakus, Y, Trinh, C.H, Pearson, A.R, Ogel, Z.B, McPherson, M.J.
Deposit date:2018-05-29
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Identification of the site of oxidase substrate binding in Scytalidium thermophilum catalase.
Acta Crystallogr D Struct Biol, 74, 2018
5KV0
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BU of 5kv0 by Molmil
Human cyclophilin A at 278K, Data set 2
Descriptor: Peptidyl-prolyl cis-trans isomerase A
Authors:Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H.
Deposit date:2016-07-13
Release date:2016-08-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
9GK2
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BU of 9gk2 by Molmil
Surface-layer (S-layer) PS2 protein from Corynebacterium glutamicum
Descriptor: PS2
Authors:Sogues, A, Remaut, H, Sleutel, M.
Deposit date:2024-08-23
Release date:2024-10-02
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM structure and polar assembly of the PS2 S-layer of Corynebacterium glutamicum.
Biorxiv, 2024
5KVS
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BU of 5kvs by Molmil
Substrate Analog and NADP+ bound structure of Irp3, a Thiazolinyl Imine Reductase from Yersinia enterocolitica
Descriptor: (4~{R})-2-[2-(2-hydroxyphenyl)-1,3-thiazol-4-yl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid, 1,2-ETHANEDIOL, FORMIC ACID, ...
Authors:Meneely, K.M, Lamb, A.L.
Deposit date:2016-07-15
Release date:2016-09-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Holo Structure and Steady State Kinetics of the Thiazolinyl Imine Reductases for Siderophore Biosynthesis.
Biochemistry, 55, 2016
8ZOZ
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BU of 8zoz by Molmil
Crystal structure of the complex of glyceraldehyde-3-phosphate dehydrogenase of type B from Acinetobacter baumannii with Adenosine monophosphate at 3.20 A resolution.
Descriptor: ADENOSINE MONOPHOSPHATE, Glyceraldehyde-3-phosphate dehydrogenase, SULFATE ION
Authors:Pahuja, P, Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Sharma, S, Raje, C.I, Singh, T.P.
Deposit date:2024-05-29
Release date:2024-06-12
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the complex of glyceraldehyde-3-phosphate dehydrogenase of type B from Acinetobacter baumannii with Adenosine monophosphate at 3.20 A resolution.
To Be Published
9C3U
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BU of 9c3u by Molmil
Crystal structure of DNA N6-Adenine Methyltransferase M.BceJIV from Burkholderia cenocepacia in complex with duplex DNA substrate containing GTTTAC as recognition sequence
Descriptor: DNA1, DNA2, Methyltransferase, ...
Authors:Kottur, J, Quintana-Feliciano, R, Aggarwal, A.K.
Deposit date:2024-06-02
Release date:2024-09-11
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Burkholderia cenocepacia epigenetic regulator M.BceJIV simultaneously engages two DNA recognition sequences for methylation.
Nat Commun, 15, 2024
6TGU
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BU of 6tgu by Molmil
Crystal structure of human protein kinase CK2alpha'(CSNK2A2 gene product) in complex with the 2-aminothiazole-type inhibitor Cl-OH-3
Descriptor: 1,2-ETHANEDIOL, 4-[[4-(4-chlorophenyl)-1,3-thiazol-2-yl]amino]-2-oxidanyl-benzoic acid, Casein kinase II subunit alpha'
Authors:Niefind, K, Lindenblatt, D, Jose, J, Applegate, V.M, Nickelsen, A.
Deposit date:2019-11-18
Release date:2020-07-08
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (0.833 Å)
Cite:Structural and Mechanistic Basis of the Inhibitory Potency of Selected 2-Aminothiazole Compounds on Protein Kinase CK2.
J.Med.Chem., 63, 2020
4OJA
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BU of 4oja by Molmil
Structure of Hydra Cu-Zn superoxide dismutase
Descriptor: COPPER (II) ION, SULFATE ION, Superoxide dismutase [Cu-Zn], ...
Authors:Anupama, A, Ramaswamy, S, Sai Sudha, P.
Deposit date:2014-01-21
Release date:2015-01-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.277 Å)
Cite:Structure of a Cu-Zn Superoxide dismutase at an evolutionary crossroad.
To be Published
6ADZ
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BU of 6adz by Molmil
LdCoroCC Double mutant- I486A-L493A
Descriptor: Coronin-like protein, SULFATE ION
Authors:Karade, S.S, Ansari, A, Pratap, J.V.
Deposit date:2018-08-02
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.431 Å)
Cite:Molecular and structural analysis of a mechanical transition of helices in the L. donovani coronin coiled-coil domain.
Int.J.Biol.Macromol., 143, 2020

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