Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89472 results

7QZH
DownloadVisualize
BU of 7qzh by Molmil
SFX structure of dye-type peroxidase DtpB D152A variant in the ferric state
Descriptor: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
Deposit date:2022-01-31
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
7QZE
DownloadVisualize
BU of 7qze by Molmil
SFX structure of dye-type peroxidase DtpB D152A variant in the ferryl state
Descriptor: Dyp-type peroxidase family, MAGNESIUM ION, OXYGEN ATOM, ...
Authors:Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
Deposit date:2022-01-31
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
7VVN
DownloadVisualize
BU of 7vvn by Molmil
PTH-bound human PTH1R in complex with Gs (class4)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
8HY5
DownloadVisualize
BU of 8hy5 by Molmil
Structure of D-amino acid oxidase mutant R38H
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, D-amino-acid oxidase, ...
Authors:Khan, S, Upadhyay, S, Dave, U, Kumar, A, Gomes, J.
Deposit date:2023-01-05
Release date:2023-01-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mechanistic insights into ALS patient derived mutations in D-amino acid oxidase.
Int.J.Biol.Macromol., 256, 2023
4YSZ
DownloadVisualize
BU of 4ysz by Molmil
Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide
Descriptor: 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide, Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Harada, S, Shiba, T, Sato, D, Yamamoto, A, Nagahama, M, Yone, A, Inaoka, D.K, Sakamoto, K, Inoue, M, Honma, T, Kita, K.
Deposit date:2015-03-17
Release date:2015-08-05
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria
Int J Mol Sci, 16, 2015
6D1B
DownloadVisualize
BU of 6d1b by Molmil
Crystal structure of NDM-1 complexed with compound 2
Descriptor: ACETATE ION, Metallo-beta-lactamase type 2, ZINC ION, ...
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2018-04-11
Release date:2019-04-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
1PPZ
DownloadVisualize
BU of 1ppz by Molmil
Trypsin complexes at atomic and ultra-high resolution
Descriptor: SULFATE ION, Trypsin
Authors:Schmidt, A, Jelsch, C, Rypniewski, W, Lamzin, V.S.
Deposit date:2003-06-17
Release date:2003-11-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Trypsin Revisited: CRYSTALLOGRAPHY AT (SUB) ATOMIC RESOLUTION AND QUANTUM CHEMISTRY REVEALING DETAILS OF CATALYSIS.
J.Biol.Chem., 278, 2003
2VE4
DownloadVisualize
BU of 2ve4 by Molmil
Substrate free cyanobacterial CYP120A1
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, PUTATIVE CYTOCHROME P450 120
Authors:Kuhnel, K, Ke, N, Sligar, S.G, Schuler, M.A, Schlichting, I.
Deposit date:2007-10-16
Release date:2008-04-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of Substrate-Free and Retinoic Acid-Bound Cyanobacterial Cytochrome P450 Cyp120A1.
Biochemistry, 47, 2008
7VVK
DownloadVisualize
BU of 7vvk by Molmil
PTH-bound human PTH1R in complex with Gs (class1)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
6D1H
DownloadVisualize
BU of 6d1h by Molmil
Crystal structure of NDM-1 complexed with compound 11
Descriptor: ACETATE ION, Metallo-beta-lactamase type 2, ZINC ION, ...
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2018-04-11
Release date:2019-04-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
4YUB
DownloadVisualize
BU of 4yub by Molmil
Crystal structure of human Nicotinic Acid Phosphoribosyltransferase
Descriptor: Nicotinate phosphoribosyltransferase
Authors:Garavaglia, S, Rizzi, M, Marletta, A.S.
Deposit date:2015-03-18
Release date:2015-05-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of human nicotinic acid phosphoribosyltransferase.
Febs Open Bio, 5, 2015
6VM7
DownloadVisualize
BU of 6vm7 by Molmil
SILv44 T cell receptor bound to HLA-A2 presenting gp100 peptide (ITDQVPFSV)
Descriptor: Beta-2-microglobulin, GLYCEROL, MHC class I antigen, ...
Authors:Smith, A.R, Baker, B.M.
Deposit date:2020-01-27
Release date:2021-01-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structurally silent peptide anchor modifications allosterically modulate T cell recognition in a receptor-dependent manner
Proc.Natl.Acad.Sci.USA, 118, 2021
5IER
DownloadVisualize
BU of 5ier by Molmil
Structure of a computationally designed 17-OHP binder
Descriptor: (9beta)-17-hydroxypregn-4-ene-3,20-dione, OHP9, SODIUM ION, ...
Authors:Stoddard, B.L, Doyle, L.A.
Deposit date:2016-02-25
Release date:2017-03-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Sampling and energy evaluation challenges in ligand binding protein design.
Protein Sci., 26, 2017
2VHG
DownloadVisualize
BU of 2vhg by Molmil
Crystal Structure of the ISHp608 Transposase in Complex with Right End 31-mer DNA
Descriptor: MANGANESE (II) ION, RIGHT END 31-MER, TRANSPOSASE ORFA
Authors:Barabas, O, Ronning, D.R, Guynet, C, Hickman, A.B, Ton-Hoang, B, Chandler, M, Dyda, F.
Deposit date:2007-11-21
Release date:2008-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection.
Cell(Cambridge,Mass.), 132, 2008
4YTK
DownloadVisualize
BU of 4ytk by Molmil
Structure of the KOW1-Linker1 domain of Transcription Elongation Factor Spt5
Descriptor: Transcription elongation factor SPT5
Authors:Meyer, P.A, Li, S, Zhang, M, Yamada, K, Takagi, Y, Hartzog, G.A, Fu, J.
Deposit date:2015-03-17
Release date:2015-08-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.0904 Å)
Cite:Structures and Functions of the Multiple KOW Domains of Transcription Elongation Factor Spt5.
Mol.Cell.Biol., 35, 2015
4NFK
DownloadVisualize
BU of 4nfk by Molmil
Crystal structure of human FPPS in complex with nickel, JDS05120, and sulfate
Descriptor: Farnesyl pyrophosphate synthase, NICKEL (II) ION, SULFATE ION, ...
Authors:Park, J, De schutter, J.W, Tsantrizos, Y.S, Berghuis, A.M.
Deposit date:2013-10-31
Release date:2014-12-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystallographic and thermodynamic characterization of phenylaminopyridine bisphosphonates binding to human farnesyl pyrophosphate synthase.
PLoS ONE, 12, 2017
7QZG
DownloadVisualize
BU of 7qzg by Molmil
SFX structure of dye-type peroxidase DtpB N245A variant in the ferric state
Descriptor: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
Deposit date:2022-01-31
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
3MKG
DownloadVisualize
BU of 3mkg by Molmil
Low pH as-isolated tomato chloroplast superoxide dismutase
Descriptor: Superoxide dismutase [Cu-Zn], chloroplastic, ZINC ION
Authors:Galaleldeen, A, Taylor, A.B, Hart, P.J.
Deposit date:2010-04-14
Release date:2011-05-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biophysical properties of tomato chloroplast sod
To be Published
6SJY
DownloadVisualize
BU of 6sjy by Molmil
Diaminobutyrate acetyltransferase EctA from Paenibacillus lautus in complex with its product ADABA
Descriptor: (2~{S})-4-acetamido-2-azanyl-butanoic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ...
Authors:Richter, A.A, Kobus, S, Czech, L, Hoeppner, A, Bremer, E, Smits, S.H.J.
Deposit date:2019-08-14
Release date:2020-01-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The architecture of the diaminobutyrate acetyltransferase active site provides mechanistic insight into the biosynthesis of the chemical chaperone ectoine.
J.Biol.Chem., 295, 2020
7VVM
DownloadVisualize
BU of 7vvm by Molmil
PTH-bound human PTH1R in complex with Gs (class3)
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
Deposit date:2021-11-06
Release date:2022-08-03
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7LVP
DownloadVisualize
BU of 7lvp by Molmil
Cryptococcus neoformans AIR synthetase
Descriptor: 1,2-ETHANEDIOL, AIR synthase, GLYCINE, ...
Authors:Chua, S.M.H, Luo, Z, Lim, B.Y.J, Kobe, B, Fraser, J.A.
Deposit date:2021-02-26
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural features of Cryptococcus neoformans bifunctional GAR/AIR synthetase may present novel antifungal drug targets.
J.Biol.Chem., 297, 2021
5TSQ
DownloadVisualize
BU of 5tsq by Molmil
Crystal structure of IUnH from Leishmania braziliensis in complex with D-Ribose
Descriptor: CALCIUM ION, IUnH, beta-D-ribofuranose
Authors:Bachega, J.F.R, Timmers, L.F.S.M, Dalberto, P.F, Martinelli, L, Pinto, A.F.M, Basso, L.A, Norberto de Souza, O, Santos, D.S.
Deposit date:2016-10-31
Release date:2016-12-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Crystal structure of IUnH from Leishmania braziliensis in complex with D-Ribose
To Be Published
4O2I
DownloadVisualize
BU of 4o2i by Molmil
The crystal structure of non-LEE encoded type III effector C from Citrobacter rodentium
Descriptor: Non-LEE encoded type III effector C, ZINC ION
Authors:Chang, C, Xu, X, Cui, H, Savchenko, A, Adkins, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Deposit date:2013-12-17
Release date:2014-01-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of non-LEE encoded type III effector C from Citrobacter rodentium
To be Published
6VOP
DownloadVisualize
BU of 6vop by Molmil
Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Escherichia coli
Descriptor: Aldolase
Authors:Stogios, P.J, Evdokimova, E, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-01-31
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Escherichia coli
To Be Published
6SLK
DownloadVisualize
BU of 6slk by Molmil
Diaminobutyrate acetyltransferase EctA from Paenibacillus lautus
Descriptor: L-2,4-diaminobutyric acid acetyltransferase, SODIUM ION, SULFATE ION
Authors:Richter, A.A, Kobus, S, Czech, L, Hoeppner, A, Bremer, E, Smits, S.H.J.
Deposit date:2019-08-20
Release date:2020-01-29
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The architecture of the diaminobutyrate acetyltransferase active site provides mechanistic insight into the biosynthesis of the chemical chaperone ectoine.
J.Biol.Chem., 295, 2020

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon