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PDB: 89111 results

8E66
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ETV6 H396Y variant bound to DNA containing the sequence GGAA
Descriptor: CACODYLATE ION, Complementary 15 bp strand, GGAA-containing 15 bp DNA, ...
Authors:Scheu, K, Chan, A.C, Murphy, M.E, McIntosh, L.P.
Deposit date:2022-08-22
Release date:2023-08-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The functional role of histidine within the ETV6 ETS domain
to be published
4RK1
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BU of 4rk1 by Molmil
Crystal structure of LacI family transcriptional regulator from Enterococcus faecium, Target EFI-512930, with bound ribose
Descriptor: CHLORIDE ION, Ribose transcriptional regulator, alpha-D-ribofuranose
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Siedel, R.D, Hillerich, B, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-10-11
Release date:2014-10-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of LacI Transcriptional Regulator Rbsr from Enterococcus faecium, Target EFI-512930
To be Published
8JTX
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BU of 8jtx by Molmil
hOCT1 in complex with nb5660 in inward facing fully open conformation
Descriptor: Solute carrier family 22 member 1, nanobody 56
Authors:Zhang, S, Zhu, A, Kong, F, Chen, J, Lan, B, He, G, Gao, K, Cheng, L, Yan, C, Chen, L, Liu, X.
Deposit date:2023-06-22
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structural insights into human organic cation transporter 1 transport and inhibition.
Cell Discov, 10, 2024
8E04
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BU of 8e04 by Molmil
Structure of monomeric LRRK1
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 1
Authors:Reimer, J.M, Mathea, S, Chatterjee, D, Knapp, S, Leschziner, A.E.
Deposit date:2022-08-08
Release date:2023-08-30
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of LRRK1 and mechanisms of autoinhibition and activation.
Nat.Struct.Mol.Biol., 30, 2023
5CX8
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BU of 5cx8 by Molmil
Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis.
Descriptor: 3-deoxy-5-O-phosphono-beta-D-ribofuranose, 3-deoxy-beta-D-glucopyranose, 6-O-phosphono-D-tagatose, ...
Authors:Goulas, T, Garcia-Ferrer, I, Hutcherson, J.A, Potempa, B.A, Potempa, J, Scott, D.A, Gomis-Ruth, F.X.
Deposit date:2015-07-28
Release date:2015-10-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of RagB, a major immunodominant outer-membrane surface receptor antigen of Porphyromonas gingivalis.
Mol Oral Microbiol, 31, 2016
8JTZ
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hOCT1 in complex with spironolactone in outward facing partially occluded conformation
Descriptor: SPIRONOLACTONE, Solute carrier family 22 member 1
Authors:Zhang, S, Zhu, A, Kong, F, Chen, J, Lan, B, He, G, Gao, K, Cheng, L, Yan, C, Chen, L, Liu, X.
Deposit date:2023-06-22
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Structural insights into human organic cation transporter 1 transport and inhibition.
Cell Discov, 10, 2024
6BF8
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BU of 6bf8 by Molmil
Cryo-EM structure of human insulin degrading enzyme in complex with insulin
Descriptor: Insulin-degrading enzyme
Authors:Liang, W.G, Zhang, Z, Bailey, L.J, Kossiakoff, A.A, Tan, Y.Z, Wei, H, Carragher, B, Potter, S.C, Tang, W.J.
Deposit date:2017-10-26
Release date:2018-04-04
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme.
Elife, 7, 2018
5FTJ
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BU of 5ftj by Molmil
Cryo-EM structure of human p97 bound to UPCDC30245 inhibitor
Descriptor: 1-(3-(5-FLUORO-1H-INDOL-2-YL)PHENYL)PIPERIDIN-4-YL)(2-(4-ISOPROPYL-PIPERAZIN1-YL)ETHYL)-CARBAMATE, ADENOSINE-5'-DIPHOSPHATE, TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
Authors:Banerjee, S, Bartesaghi, A, Merk, A, Rao, P, Bulfer, S.L, Yan, Y, Green, N, Mroczkowski, B, Neitz, R.J, Wipf, P, Falconieri, V, Deshaies, R.J, Milne, J.L.S, Huryn, D, Arkin, M, Subramaniam, S.
Deposit date:2016-01-14
Release date:2016-01-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:2.3 A Resolution Cryo-Em Structure of Human P97 and Mechanism of Allosteric Inhibition
Science, 351, 2016
8JTT
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BU of 8jtt by Molmil
hOCT1 in complex with metformin in outward occluded conformation
Descriptor: Metformin, Solute carrier family 22 member 1
Authors:Zhang, S, Zhu, A, Kong, F, Chen, J, Lan, B, He, G, Gao, K, Cheng, L, Yan, C, Chen, L, Liu, X.
Deposit date:2023-06-22
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Structural insights into human organic cation transporter 1 transport and inhibition.
Cell Discov, 10, 2024
4Y3Z
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BU of 4y3z by Molmil
Endothiapepsin in complex with fragment 41
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Endothiapepsin, ...
Authors:Radeva, N, Uehlein, M, Weiss, M.S, Heine, A, Klebe, G.
Deposit date:2015-02-10
Release date:2016-02-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Crystallographic Fragment Screening of an Entire Library
To Be Published
7UGC
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BU of 7ugc by Molmil
Structure of the N-terminal domain of ViaA
Descriptor: Protein ViaA
Authors:Lemak, A, Reichheld, S, Bhandari, V, Houliston, S, Arrowsmith, C.H, Sharpe, S, Houry, W.A.
Deposit date:2022-03-24
Release date:2023-03-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the N-terminal domain of ViaA
To Be Published
4YJZ
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BU of 4yjz by Molmil
Human antibody H2526 in complex with influenza hemagglutinin H1 Solomon Islands/03/2006
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, scFv H2526
Authors:Schmidt, A.G, Harrison, S.C.
Deposit date:2015-03-03
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Viral receptor-binding site antibodies with diverse germline origins.
Cell, 161, 2015
6H2F
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BU of 6h2f by Molmil
Structure of the pre-pore AhlB of the tripartite alpha-pore forming toxin, AHL, from Aeromonas hydrophila.
Descriptor: AhlB, PHOSPHATE ION
Authors:Churchill-Angus, A.M, Wilson, J.S, Baker, P.J.
Deposit date:2018-07-13
Release date:2019-07-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Identification and structural analysis of the tripartite alpha-pore forming toxin of Aeromonas hydrophila.
Nat Commun, 10, 2019
5I90
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BU of 5i90 by Molmil
Crystal Structure of PvdN from Pseudomonas Aeruginosa
Descriptor: 1,2-ETHANEDIOL, PYRIDOXAL-5'-PHOSPHATE, PvdN
Authors:Drake, E.J, Gulick, A.M.
Deposit date:2016-02-19
Release date:2016-05-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.219 Å)
Cite:1.2 angstrom resolution crystal structure of the periplasmic aminotransferase PvdN from Pseudomonas aeruginosa.
Acta Crystallogr F Struct Biol Commun, 72, 2016
7QR3
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BU of 7qr3 by Molmil
Chimpanzee CPEB3 HDV-like ribozyme
Descriptor: GLYCEROL, POTASSIUM ION, U1 small nuclear ribonucleoprotein A, ...
Authors:Przytula-Mally, A.I, Engilberge, S, Johannsen, S, Olieric, V, Masquida, B, Sigel, R.K.O.
Deposit date:2022-01-10
Release date:2022-10-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Anticodon-like loop-mediated dimerization in the crystal structures of HdV-like CPEB3 ribozymes
Biorxiv, 2022
4Y56
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BU of 4y56 by Molmil
Endothiapepsin in complex with fragment 58
Descriptor: 1,2-ETHANEDIOL, 1-(1,3-dimethyl-1H-pyrazol-5-yl)methanamine, DIMETHYL SULFOXIDE, ...
Authors:Radeva, N, Heine, A, Klebe, G.
Deposit date:2015-02-11
Release date:2016-03-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Crystallographic Fragment Screening of an Entire Library
To Be Published
6H46
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BU of 6h46 by Molmil
Human KRAS in complex with darpin K13
Descriptor: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, SULFATE ION, ...
Authors:Debreczeni, J.E, Bery, N, Legg, S, Breed, J, Embrey, K, Stubbs, C, Kolasinska-Zwierz, P, Barrett, N, Marwood, R, Watson, J, Tart, J, Overman, R, Miller, A, Phillips, C, Minter, R, Rabbitts, T.H.
Deposit date:2018-07-20
Release date:2019-04-24
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:KRAS-specific inhibition using a DARPin binding to a site in the allosteric lobe.
Nat Commun, 10, 2019
6VDL
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BU of 6vdl by Molmil
HCV NS3/4A protease A156T mutant in complex with glecaprevir
Descriptor: (3aR,7S,10S,12R,21E,24aR)-7-tert-butyl-N-[(1R,2R)-2-(difluoromethyl)-1-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}cyclop ropyl]-20,20-difluoro-5,8-dioxo-2,3,3a,5,6,7,8,11,12,20,23,24a-dodecahydro-1H,10H-9,12-methanocyclopenta[18,19][1,10,17, 3,6]trioxadiazacyclononadecino[11,12-b]quinoxaline-10-carboxamide, GLYCEROL, ...
Authors:Timm, J, Schiffer, C.A.
Deposit date:2019-12-27
Release date:2020-12-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:RAS at position 156 of HCV NS3/4A protease abolish inhibition by current HCV drugs
To Be Published
6FBK
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BU of 6fbk by Molmil
Crystal structure of the human WNK2 CCT-like 1 domain in complex with a WNK1 RFXV peptide
Descriptor: Serine/threonine-protein kinase WNK1, Serine/threonine-protein kinase WNK2
Authors:Pinkas, D.M, Bufton, J.C, Burgess-Brown, N.A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N.
Deposit date:2017-12-19
Release date:2018-01-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.743 Å)
Cite:Crystal structure of the human WNK2 CCT-like 1 domain in complex with a WNK1 RFXV peptide
To Be Published
6APG
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BU of 6apg by Molmil
Trans-acting transferase from Disorazole synthase with malonate
Descriptor: CALCIUM ION, DisD protein, GLYCEROL, ...
Authors:Mathews, I.I, Lyubimov, A.Y, Soltis, S.M, Khosla, C, Robbins, T, Cohen, A.E.
Deposit date:2017-08-17
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.
Biochemistry, 56, 2017
7Q6O
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BU of 7q6o by Molmil
Structure of WrbA from Yersinia pseudotuberculosis in C2221
Descriptor: CHLORIDE ION, NAD(P)H dehydrogenase (quinone)
Authors:Gabrielsen, M, Beckham, K.S.H, Roe, A.J.
Deposit date:2021-11-08
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structures of WrbA, a spurious target of the salicylidene acylhydrazide inhibitors of type III secretion in Gram-negative pathogens, and verification of improved specificity of next-generation compounds.
Microbiology (Reading, Engl.), 168, 2022
8OF5
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BU of 8of5 by Molmil
Crystal structure of Aurora A 122-403 C290A, N332A, Q335A, C393A bound to ADP
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Miles, J.A, Hammond, K.L.R, Bayliss, R.
Deposit date:2023-03-14
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of Aurora A 122-403 C290A, N332A, Q335A, C393A bound to ADP
To Be Published
8B2R
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BU of 8b2r by Molmil
Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with a rice (Oryza sativa) RGA5 HMA domain mutant.
Descriptor: 1,2-ETHANEDIOL, AVR-Pik protein, CHLORIDE ION, ...
Authors:Bentham, A.R, Banfield, M.J.
Deposit date:2022-09-14
Release date:2022-10-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Allelic compatibility in plant immune receptors facilitates engineering of new effector recognition specificities.
Plant Cell, 35, 2023
6AQP
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BU of 6aqp by Molmil
Aspergillus fumigatus Cytosolic Thiolase: Acetylated enzyme in complex with CoA and potassium ions
Descriptor: ACETYL COENZYME *A, Acetyl-CoA acetyltransferase, CHLORIDE ION, ...
Authors:Marshall, A.C, Bond, C.S, Bruning, J.B.
Deposit date:2017-08-21
Release date:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Aspergillus fumigatus Cytosolic Thiolase: Trapped Tetrahedral Reaction Intermediates and Activation by Monovalent Cations
Acs Catalysis, 8(3), 2018
8OF1
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BU of 8of1 by Molmil
Structure of ALDH5F1 from moss Physcomitrium patens in complex with NAD+ in the contracted conformation
Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Kopecny, D, Vigouroux, A.
Deposit date:2023-03-13
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:A study on abiotic stress responses of aldehyde dehydrogenase (ALDH) superfamilies in moss and barley focused on members linked to the GABA shunt pathway
To Be Published

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PDB entries from 2024-09-11

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