Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7XME
DownloadVisualize
BU of 7xme by Molmil
Structure of Influenza A virus polymerase basic protein 2 (PB2) with an azazindole derivative
Descriptor: (2~{S},3~{S})-3-[[5-dimethoxyphosphoryl-4-(5-fluoranyl-1~{H}-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-2-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid, IODIDE ION, Polymerase basic protein 2
Authors:Zhang, Z.
Deposit date:2022-04-25
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.521 Å)
Cite:Discovery of a novel azaindole derivatives targeting the influenza PB2 cap binding region
To Be Published
7VGR
DownloadVisualize
BU of 7vgr by Molmil
SARS-CoV-2 M protein dimer (long form) in complex with YN7756_1 Fab
Descriptor: Membrane protein, YN7756_1 Fab heavy chain, YN7756_1 Fab light chain
Authors:Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2021-09-18
Release date:2022-08-03
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of SARS-CoV-2 membrane protein essential for virus assembly.
Nat Commun, 13, 2022
7VGS
DownloadVisualize
BU of 7vgs by Molmil
SARS-CoV-2 M protein dimer (short form) in complex with YN7717_9 Fab
Descriptor: Membrane protein, YN7717_9 Fab heavy chain, YN7717_9 Fab light chain
Authors:Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2021-09-18
Release date:2022-08-03
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of SARS-CoV-2 membrane protein essential for virus assembly.
Nat Commun, 13, 2022
5MOF
DownloadVisualize
BU of 5mof by Molmil
Ethylene Forming Enzyme from Pseudomonas syringae pv. phaseolicola - I222 crystal form in complex with manganese and 2-oxoglutarate
Descriptor: 2-OXOGLUTARIC ACID, 2-oxoglutarate-dependent ethylene/succinate-forming enzyme, CHLORIDE ION, ...
Authors:McDonough, M.A, Zhang, Z, Schofield, C.J.
Deposit date:2016-12-14
Release date:2017-04-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and stereoelectronic insights into oxygenase-catalyzed formation of ethylene from 2-oxoglutarate.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7RY3
DownloadVisualize
BU of 7ry3 by Molmil
Multidrug Efflux pump AdeJ with TP-6076 bound
Descriptor: (4S,4aS,5aR,12aS)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2S)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, Efflux pump membrane transporter
Authors:Zhang, Z.
Deposit date:2021-08-24
Release date:2022-02-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii.
Mbio, 13, 2022
1TPC
DownloadVisualize
BU of 1tpc by Molmil
OFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLE
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Zhang, Z, Sugio, S, Komives, E.A, Liu, K.D, Knowles, J.R, Petsko, G.A, Ringe, D.
Deposit date:1994-02-03
Release date:1995-02-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for pseudoreversion of the E165D lesion by the secondary S96P mutation in triosephosphate isomerase depends on the positions of active site water molecules.
Biochemistry, 34, 1995
1TPB
DownloadVisualize
BU of 1tpb by Molmil
OFFSET OF A CATALYTIC LESION BY A BOUND WATER SOLUBLE
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Zhang, Z, Sugio, S, Komives, E.A, Liu, K.D, Knowles, J.R, Petsko, G.A, Ringe, D.
Deposit date:1994-02-03
Release date:1995-02-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for pseudoreversion of the E165D lesion by the secondary S96P mutation in triosephosphate isomerase depends on the positions of active site water molecules.
Biochemistry, 34, 1995
6YPC
DownloadVisualize
BU of 6ypc by Molmil
Crystal structure of the kinetochore subunits H/I/K/T/W penta-complex from S. cerevisiae at 2.9 angstroms
Descriptor: Inner kinetochore subunit CNN1, Inner kinetochore subunit CTF3, Inner kinetochore subunit MCM16, ...
Authors:Bellini, D, Zhang, Z, Barford, D.
Deposit date:2020-04-15
Release date:2020-09-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the Cenp-HIKHead-TW sub-module of the inner kinetochore CCAN complex.
Nucleic Acids Res., 48, 2020
4XPU
DownloadVisualize
BU of 4xpu by Molmil
The crystal structure of EndoV from E.coli
Descriptor: Endonuclease V
Authors:Xie, W, Zhang, Z.
Deposit date:2015-01-18
Release date:2015-08-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of E. coli endonuclease V, an essential enzyme for deamination repair
Sci Rep, 5, 2015
1X11
DownloadVisualize
BU of 1x11 by Molmil
X11 PTB DOMAIN
Descriptor: 13-MER PEPTIDE, X11
Authors:Lee, C.-H, Zhang, Z, Kuriyan, J.
Deposit date:1997-07-28
Release date:1998-01-14
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Sequence-specific recognition of the internalization motif of the Alzheimer's amyloid precursor protein by the X11 PTB domain.
EMBO J., 16, 1997
5JQD
DownloadVisualize
BU of 5jqd by Molmil
Antibody Fab Fragment
Descriptor: D80 Fab Fragment Heavy Chain, D80 Fab Fragment Light Chain
Authors:Zhang, Z, Prachanronarong, K, Gellatly, K, Marasco, W.A, Schiffer, C.A.
Deposit date:2016-05-04
Release date:2017-11-08
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (2.591 Å)
Cite:Structural Basis of an Influenza Hemagglutinin Stem-Directed Antibody Retaining the G6 Idiotype
To Be Published
5JO4
DownloadVisualize
BU of 5jo4 by Molmil
Antibody Fab Fragment Complex
Descriptor: D80 Fab Heavy Chain, D80 Fab Light Chain, G6 Fab Heavy Chain, ...
Authors:Zhang, Z, Prachanronarong, K.P, Marasco, W.A, Schiffer, C.A.S.
Deposit date:2016-05-01
Release date:2017-11-08
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structural Basis of an Influenza Hemagglutinin Stem-Directed Antibody Retaining the G6 Idiotype
To Be Published
1TPU
DownloadVisualize
BU of 1tpu by Molmil
S96P CHANGE IS A SECOND-SITE SUPPRESSOR FOR H95N SLUGGISH MUTANT TRIOSEPHOSPHATE ISOMERASE
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Zhang, Z, Sugio, S, Komives, E.A, Liu, K.D, Stock, A.M, Narayana, N, Xuong, Ng.H, Knowles, J.R, Petsko, G.A, Ringe, D.
Deposit date:1994-11-07
Release date:1995-04-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for pseudoreversion of the H95N lesion by the secondary S96P mutation in triosephosphate isomerase.
Biochemistry, 35, 1996
1TPV
DownloadVisualize
BU of 1tpv by Molmil
S96P CHANGE IS A SECOND-SITE SUPPRESSOR FOR H95N SLUGGISH MUTANT TRIOSEPHOSPHATE ISOMERASE
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Zhang, Z, Sugio, S, Komives, E.A, Liu, K.D, Stock, A.M, Narayana, N, Xuong, Ng.H, Knowles, J.R, Petsko, G.A, Ringe, D.
Deposit date:1994-11-07
Release date:1995-04-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for pseudoreversion of the H95N lesion by the secondary S96P mutation in triosephosphate isomerase.
Biochemistry, 35, 1996
5LUN
DownloadVisualize
BU of 5lun by Molmil
Ethylene Forming Enzyme from Pseudomonas syringae pv. phaseolicola - P1 ultra-high resolution crystal form in complex with iron, N-oxalylglycine and arginine
Descriptor: 2-oxoglutarate-dependent ethylene/succinate-forming enzyme, ARGININE, FE (III) ION, ...
Authors:McDonough, M.A, Zhang, Z, Schofield, C.J.
Deposit date:2016-09-09
Release date:2017-04-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Structural and stereoelectronic insights into oxygenase-catalyzed formation of ethylene from 2-oxoglutarate.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4NSP
DownloadVisualize
BU of 4nsp by Molmil
Crystal structure of human ENDOV
Descriptor: Endonuclease V
Authors:Xie, W, Zhang, Z, Hao, Z.
Deposit date:2013-11-28
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of human endonuclease V as an inosine-specific ribonuclease.
Acta Crystallogr.,Sect.D, 70, 2014
3KAE
DownloadVisualize
BU of 3kae by Molmil
Cdc27 N-terminus
Descriptor: CHLORIDE ION, GLYCEROL, Possible protein of nuclear scaffold, ...
Authors:Barford, D, Zhang, Z, Roe, S.M.
Deposit date:2009-10-19
Release date:2010-03-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Molecular structure of the N-terminal domain of the APC/C subunit Cdc27 reveals a homo-dimeric tetratricopeptide repeat architecture
J.Mol.Biol., 397, 2010
5H6V
DownloadVisualize
BU of 5h6v by Molmil
Structure of Zika virus protease in complex with a dipeptide inhibitor
Descriptor: (S)-2-acetamido-6-amino-N-((S)-5-guanidino-1-oxopentan-2-yl)hexanamide, Genome polyprotein
Authors:Zhang, Z, Chen, M.
Deposit date:2016-11-15
Release date:2017-06-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.422 Å)
Cite:Structural Dynamics of Zika Virus NS2B-NS3 Protease Binding to Dipeptide Inhibitors
Structure, 25, 2017
5H99
DownloadVisualize
BU of 5h99 by Molmil
Crystal structure of Geobacter metallireducens SMUG1 mutant N58D
Descriptor: Geobacter metallireducens SMUG1
Authors:Xie, W, Cao, W, Zhang, Z, Shen, J.
Deposit date:2015-12-26
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1
Acs Chem.Biol., 11, 2016
5H9I
DownloadVisualize
BU of 5h9i by Molmil
Crystal structure of Geobacter metallireducens SMUG1 with xanthine
Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, Geobacter metallireducens SMUG1, ...
Authors:Xie, W, Cao, W, Zhang, Z, Shen, J.
Deposit date:2015-12-28
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1
Acs Chem.Biol., 11, 2016
5H93
DownloadVisualize
BU of 5h93 by Molmil
Crystal structure of Geobacter metallireducens SMUG1
Descriptor: Geobacter metallireducens SMUG1
Authors:Xie, W, Cao, W, Zhang, Z, Shen, J.
Deposit date:2015-12-25
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.176 Å)
Cite:Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1
Acs Chem.Biol., 11, 2016
5H98
DownloadVisualize
BU of 5h98 by Molmil
Crystal structure of Geobacter metallireducens SMUG1
Descriptor: Geobacter metallireducens SMUG1
Authors:Xie, W, Cao, W, Zhang, Z, Shen, J.
Deposit date:2015-12-26
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1
Acs Chem.Biol., 11, 2016
8GS4
DownloadVisualize
BU of 8gs4 by Molmil
Cryo-EM structure of human Neuroligin 2
Descriptor: Neuroligin-2
Authors:Zhang, H, Zhang, Z, Hou, M.
Deposit date:2022-09-04
Release date:2023-03-01
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Expression and structural analysis of human neuroligin 2 and neuroligin 3 implicated in autism spectrum disorders.
Front Endocrinol, 13, 2022
3PX7
DownloadVisualize
BU of 3px7 by Molmil
Crystal Structure of covalent complex of topoisomerase 1A with substrate
Descriptor: DNA 5'-D(*A*AP*TP*GP*CP*GP*CP*T)-3', DNA 5'-D(*TP*TP*GP*GP*G)-3', DNA topoisomerase, ...
Authors:Zhang, Z, Tse-dinh, Y.C, Cheng, B.
Deposit date:2010-12-09
Release date:2011-04-20
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of E. coli Topoisomerase I Trapped as Covalent Complex Intermediate with Cleaved DNA
To be Published
1AQC
DownloadVisualize
BU of 1aqc by Molmil
X11 PTB DOMAIN-10MER PEPTIDE COMPLEX
Descriptor: PEPTIDE, X11
Authors:Lee, C.-H, Zhang, Z, Kuriyan, J.
Deposit date:1997-07-28
Release date:1997-12-24
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Sequence-specific recognition of the internalization motif of the Alzheimer's amyloid precursor protein by the X11 PTB domain.
EMBO J., 16, 1997

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon