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2RUY
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BU of 2ruy by Molmil
Solution structures of the DNA-binding domain (ZF10) of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RV3
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BU of 2rv3 by Molmil
Solution structures of the DNA-binding domain (ZF15) of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RUW
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BU of 2ruw by Molmil
Solution structures of the DNA-binding domain (ZF5) of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RV1
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BU of 2rv1 by Molmil
Solution structures of the DNA-binding domain (ZF13) of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RUV
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BU of 2ruv by Molmil
Solution structures of the DNA-binding domain (ZF4) of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RV5
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BU of 2rv5 by Molmil
Solution structures of the DNA-binding domain (ZF8) of mouse immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RRF
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BU of 2rrf by Molmil
The solution structure of the C-terminal region of Zinc finger FYVE domain-containing protein 21
Descriptor: Zinc finger FYVE domain-containing protein 21
Authors:Koshiba, S, Tomizawa, T, Hayashi, F, Tochio, N, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S.
Deposit date:2010-08-03
Release date:2011-08-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:ZF21 protein, a regulator of the disassembly of focal adhesions and cancer metastasis, contains a novel noncanonical pleckstrin homology domain
J.Biol.Chem., 286, 2011
2RU3
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BU of 2ru3 by Molmil
Solution structure of c.elegans SUP-12 RRM in complex with RNA
Descriptor: Protein SUP-12, isoform a, RNA (5'-R(*GP*UP*GP*UP*GP*C)-3')
Authors:Takahashi, M, Kuwasako, K, Unzai, S, Tsuda, K, Yoshikawa, S, He, F, Kobayashi, N, Guntert, P, Shirouzu, M, Ito, T, Tanaka, A, Yokoyama, S, Hagiwara, M, Kuroyanagi, H, Muto, Y.
Deposit date:2013-11-12
Release date:2014-08-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:RBFOX and SUP-12 sandwich a G base to cooperatively regulate tissue-specific splicing
Nat.Struct.Mol.Biol., 21, 2014
2RR6
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BU of 2rr6 by Molmil
Solution structure of the leucine rich repeat of human acidic leucine-rich nuclear phosphoprotein 32 family member B
Descriptor: Acidic leucine-rich nuclear phosphoprotein 32 family member B
Authors:Tochio, N, Umehara, T, Tsuda, K, Koshiba, S, Harada, T, Watanabe, S, Tanaka, A, Kigawa, T, Yokoyama, S.
Deposit date:2010-05-25
Release date:2010-06-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of histone chaperone ANP32B: interaction with core histones H3-H4 through its acidic concave domain.
J.Mol.Biol., 401, 2010
2RV7
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BU of 2rv7 by Molmil
Solution structures of the DNA-binding domains (ZF3-ZF4-ZF5) of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RUU
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BU of 2ruu by Molmil
Solution structures of the DNA-binding domain (ZF3) of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RUZ
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BU of 2ruz by Molmil
Solution structures of the DNA-binding domain (ZF11) of immune-related zinc-finger protein ZFAT
Descriptor: ZINC ION, Zinc finger protein ZFAT
Authors:Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
Deposit date:2015-01-26
Release date:2015-04-08
Last modified:2016-12-21
Method:SOLUTION NMR
Cite:Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
3U6U
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BU of 3u6u by Molmil
Crystal structure of the putative acetylglutamate kinase from thermus thermophilus
Descriptor: Putative acetylglutamate kinase, SULFATE ION
Authors:Karthe, P, Kumarevel, T.S, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-10-13
Release date:2011-11-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:The structure of first dimeric archaeal N-acetyl glutamate kinase reveals an intermediate conformation of the enzyme in the catalytic cycle
To be Published
3W1H
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BU of 3w1h by Molmil
Crystal structure of the selenocysteine synthase SelA from Aquifex aeolicus
Descriptor: L-seryl-tRNA(Sec) selenium transferase
Authors:Itoh, Y, Sekine, S, Yokoyama, S.
Deposit date:2012-11-15
Release date:2013-06-05
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.893 Å)
Cite:Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1J
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BU of 3w1j by Molmil
Crystal structure of the N-terminal truncated selenocysteine synthase SelA in complex with thiosulfate
Descriptor: L-seryl-tRNA(Sec) selenium transferase, POTASSIUM ION, THIOSULFATE
Authors:Itoh, Y, Sekine, S, Yokoyama, S.
Deposit date:2012-11-15
Release date:2013-06-05
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.252 Å)
Cite:Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1I
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BU of 3w1i by Molmil
Crystal structure of the N-terminal truncated selenocysteine synthase SelA
Descriptor: L-seryl-tRNA(Sec) selenium transferase, PLATINUM (II) ION, POTASSIUM ION
Authors:Itoh, Y, Sekine, S, Yokoyama, S.
Deposit date:2012-11-15
Release date:2013-06-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.192 Å)
Cite:Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1K
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BU of 3w1k by Molmil
Crystal structure of the selenocysteine synthase SelA and tRNASec complex
Descriptor: L-seryl-tRNA(Sec) selenium transferase, selenocysteine tRNA
Authors:Itoh, Y, Sekine, S, Yokoyama, S.
Deposit date:2012-11-15
Release date:2013-06-05
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (7.5 Å)
Cite:Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W3S
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BU of 3w3s by Molmil
Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS
Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, PLATINUM (II) ION, SULFATE ION, ...
Authors:Itoh, Y, Sekine, S, Yokoyama, S.
Deposit date:2012-12-27
Release date:2013-02-13
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (3.095 Å)
Cite:Tertiary structure of bacterial selenocysteine tRNA
Nucleic Acids Res., 41, 2013
5XHG
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BU of 5xhg by Molmil
Crystal structure of Trastuzumab Fab fragment bearing Ne-(o-azidobenzyloxycarbonyl)-L-lysine
Descriptor: (2-azidophenyl)methyl hydrogen carbonate, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Kuratani, M, Yanagisawa, T, Sakamoto, K, Yokoyama, S.
Deposit date:2017-04-20
Release date:2017-12-20
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Extensive Survey of Antibody Invariant Positions for Efficient Chemical Conjugation Using Expanded Genetic Codes.
Bioconjug. Chem., 28, 2017
5XVR
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BU of 5xvr by Molmil
EarP bound with dTDP-rhamnose (co-crystal)
Descriptor: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE, EarP, SULFATE ION
Authors:Sengoku, T, Yokoyama, S, Yanagisawa, T.
Deposit date:2017-06-28
Release date:2018-02-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP
Nat. Chem. Biol., 14, 2018
1IRX
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BU of 1irx by Molmil
Crystal structure of class I lysyl-tRNA synthetase
Descriptor: ZINC ION, lysyl-tRNA synthetase
Authors:Nureki, O, Terada, T, Ishitani, R, Ambrogelly, A, Ibba, M, Soll, D, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-10-25
Release date:2002-04-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Functional convergence of two lysyl-tRNA synthetases with unrelated topologies.
Nat.Struct.Biol., 9, 2002
5YVB
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BU of 5yvb by Molmil
Structure of CaMKK2 in complex with CKI-011
Descriptor: (3Z)-5-chloro-3-[(1-methyl-1H-pyrazol-4-yl)methylidene]-1,3-dihydro-2H-indol-2-one, CHLORIDE ION, Calcium/calmodulin-dependent protein kinase kinase 2, ...
Authors:Niwa, H, Handa, N, Yokoyama, S.
Deposit date:2017-11-24
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method.
J.Mol.Graph.Model., 99, 2020
5YV9
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BU of 5yv9 by Molmil
Structure of CaMKK2 in complex with CKI-009
Descriptor: 5-chloro-2-methoxy-4[(1Z)-3-(4-methoxyphenyl)-3-oxoprop-1-en-1-yl]aminobenzoic acid, CHLORIDE ION, Calcium/calmodulin-dependent protein kinase kinase 2, ...
Authors:Niwa, H, Handa, N, Yokoyama, S.
Deposit date:2017-11-24
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method.
J.Mol.Graph.Model., 99, 2020
1IUY
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BU of 1iuy by Molmil
Solution structure of the cullin-3 homologue
Descriptor: cullin-3 homologue
Authors:Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-08
Release date:2003-10-07
Last modified:2022-12-21
Method:SOLUTION NMR
Cite:Solution structure of the cullin-3 homologue
To be published
1IUF
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BU of 1iuf by Molmil
LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN
Descriptor: centromere abp1 protein
Authors:Kikuchi, J, Iwahara, J, Kigawa, T, Murakami, Y, Okazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-04
Release date:2002-06-05
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure determination of the two DNA-binding domains in the Schizosaccharomyces pombe Abp1 protein by a combination of dipolar coupling and diffusion anisotropy restraints.
J.Biomol.NMR, 22, 2002

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