Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6ID3
DownloadVisualize
BU of 6id3 by Molmil
Crystal structure of H7 hemagglutinin mutant H7-SGPL ( A138S, V186G) from the influenza virus A/Anhui/1/2013 (H7N9)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, Hemagglutinin HA2 chain
Authors:Gao, G.F, Xu, Y, Qi, J.X.
Deposit date:2018-09-08
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
6IDD
DownloadVisualize
BU of 6idd by Molmil
Crystal structure of H7 hemagglutinin mutant SH1-AVPL ( S138A, G186V, T221P, Q226L) from the influenza virus A/Shanghai/1/2013 (H7N9)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Gao, G.F, Xu, Y, Qi, J.X.
Deposit date:2018-09-09
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.383 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
6ICX
DownloadVisualize
BU of 6icx by Molmil
Crystal structure of H7 hemagglutinin mutant AH-AGPL (V186G) from the influenza virus A/Anhui/1/2013 (H7N9)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, Hemagglutinin HA2 chain
Authors:Gao, G.F, Xu, Y, Qi, J.X.
Deposit date:2018-09-07
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
6ID9
DownloadVisualize
BU of 6id9 by Molmil
Crystal structure of H7 hemagglutinin mutant H7-SGTL ( A138S, V186G, P221T) from the influenza virus A/Anhui/1/2013 (H7N9)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, Hemagglutinin HA2 chain
Authors:Gao, G.F, Xu, Y, Qi, J.X.
Deposit date:2018-09-09
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
6ICW
DownloadVisualize
BU of 6icw by Molmil
Crystal structure of H7 hemagglutinin mutant AH-SGTQ (A138S, V186G, P221T and L226Q) from the influenza virus A/Anhui/1/2013 (H7N9)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, Hemagglutinin HA2 chain
Authors:Gao, G.F, Xu, Y.
Deposit date:2018-09-07
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
6ID2
DownloadVisualize
BU of 6id2 by Molmil
Crystal structure of H7 hemagglutinin mutant H7-AVTL (P221T) from the influenza virus A/Anhui/1/2013 (H7N9)
Descriptor: Hemagglutinin HA1 chain, Hemagglutinin HA2 chain
Authors:Gao, G.F, Xu, Y, Qi, J.X.
Deposit date:2018-09-08
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
6ID5
DownloadVisualize
BU of 6id5 by Molmil
Crystal structure of H7 hemagglutinin mutant H7-SVPL ( A138S) from the influenza virus A/Anhui/1/2013 (H7N9)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, Hemagglutinin HA2 chain
Authors:Gao, G.F, Xu, Y, Qi, J.X.
Deposit date:2018-09-08
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
6ICY
DownloadVisualize
BU of 6icy by Molmil
Crystal structure of H7 hemagglutinin mutant H7-AGTL ( V186G, P221T) from the influenza virus A/Anhui/1/2013 (H7N9)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, Hemagglutinin HA2 chain
Authors:Gao, G.F, Xu, Y, Qi, J.X.
Deposit date:2018-09-07
Release date:2019-11-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
6IDB
DownloadVisualize
BU of 6idb by Molmil
Crystal structure of H7 hemagglutinin mutant H7-SVTQ ( A138S, P221T, L226Q) with 6'SLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, Hemagglutinin HA2 chain, ...
Authors:Gao, G.F, Xu, Y, Qi, J.X.
Deposit date:2018-09-09
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin.
Cell Rep, 29, 2019
7Y0A
DownloadVisualize
BU of 7y0a by Molmil
Crystal structure of human short-chain acyl-CoA dehydrogenase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, Short-chain specific acyl-CoA dehydrogenase, ...
Authors:Huang, Y, Xu, Y, Li, J.
Deposit date:2022-06-04
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.317 Å)
Cite:Crystal structure of human short-chain acyl-CoA dehydrogenase
To Be Published
7Y0B
DownloadVisualize
BU of 7y0b by Molmil
Crystal structure of human short-chain acyl-CoA dehydrogenase
Descriptor: (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[[4-[(3S)-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol, FLAVIN-ADENINE DINUCLEOTIDE, Short-chain specific acyl-CoA dehydrogenase, ...
Authors:Huang, Y, Xu, Y, Li, J.
Deposit date:2022-06-04
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.076 Å)
Cite:Crystal structure of human short-chain acyl-coA dehydrogenase
To Be Published
6L54
DownloadVisualize
BU of 6l54 by Molmil
Structure of SMG189
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Protein SMG8, ...
Authors:Xu, Y, Qi, Y.
Deposit date:2019-10-22
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Cryo-EM structure of SMG1-SMG8-SMG9 complex.
Cell Res., 29, 2019
6L53
DownloadVisualize
BU of 6l53 by Molmil
Structure of SMG1
Descriptor: Serine/threonine-protein kinase SMG1
Authors:Xu, Y, Qi, Y.
Deposit date:2019-10-22
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Cryo-EM structure of SMG1-SMG8-SMG9 complex.
Cell Res., 29, 2019
7DGU
DownloadVisualize
BU of 7dgu by Molmil
De novo designed protein H4A1R
Descriptor: de novo designed protein H4A1R
Authors:Xu, Y, Liao, S, Chen, Q, Liu, H.
Deposit date:2020-11-12
Release date:2021-11-24
Last modified:2022-03-02
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
7DGW
DownloadVisualize
BU of 7dgw by Molmil
De novo designed protein H4A2S
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, de novo designed protein H4A2S
Authors:Xu, Y, Liao, S, Chen, Q, Liu, H.
Deposit date:2020-11-12
Release date:2021-11-24
Last modified:2022-03-02
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
7DMF
DownloadVisualize
BU of 7dmf by Molmil
A de novo protein that rigidly extends the structure of tVHS-like domain in tepsin with a new designed domain
Descriptor: Designed protein EXTD-3
Authors:Xu, Y.
Deposit date:2020-12-03
Release date:2021-12-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
7DGY
DownloadVisualize
BU of 7dgy by Molmil
De novo designed protein H4C2R
Descriptor: de novo designed protein H4C2R
Authors:Xu, Y, Liao, S, Chen, Q, Liu, H.
Deposit date:2020-11-12
Release date:2021-12-15
Last modified:2022-03-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
6B6M
DownloadVisualize
BU of 6b6m by Molmil
Cyanase from Serratia proteamaculans
Descriptor: Cyanate hydratase
Authors:Xu, Y.
Deposit date:2017-10-02
Release date:2017-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:SIMBAD: a sequence-independent molecular-replacement pipeline.
Acta Crystallogr D Struct Biol, 74, 2018
8X16
DownloadVisualize
BU of 8x16 by Molmil
Cryo-EM structure of adenosine receptor A3AR bound to CF101
Descriptor: Adenosine receptor A3, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Cai, H, Xu, Y, Xu, H.E.
Deposit date:2023-11-06
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Cryo-EM structures of adenosine receptor A3AR bound to selective agonists
Nat Commun, 15, 2024
8X17
DownloadVisualize
BU of 8x17 by Molmil
Cryo-EM structure of adenosine receptor A3AR bound to CF102
Descriptor: Adenosine receptor A3, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Cai, H, Xu, Y, Xu, H.E.
Deposit date:2023-11-06
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Cryo-EM structures of adenosine receptor A3AR bound to selective agonists
Nat Commun, 15, 2024
1B99
DownloadVisualize
BU of 1b99 by Molmil
3'-FLUORO-URIDINE DIPHOSPHATE BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE
Descriptor: 2',3'-DIDEOXY-3'-FLUORO-URIDIDINE-5'-DIPHOSPHATE, PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE), PYROPHOSPHATE 2-
Authors:Janin, J, Xu, Y.
Deposit date:1999-02-22
Release date:1999-06-28
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Catalytic mechanism of nucleoside diphosphate kinase investigated using nucleotide analogues, viscosity effects, and X-ray crystallography.
Biochemistry, 38, 1999
1SJ6
DownloadVisualize
BU of 1sj6 by Molmil
NMR Structure and Regulated Expression in APL Cell of Human SH3BGRL3
Descriptor: SH3 domain-binding glutamic acid-rich-like protein 3
Authors:Xu, C, Tang, Y, Xu, Y, Wu, J, Shi, Y, Zhang, Q, Zheng, P, Du, Y.
Deposit date:2004-03-03
Release date:2005-03-22
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR structure and regulated expression in APL cell of human SH3BGRL3.
Febs Lett., 579, 2005
7MYN
DownloadVisualize
BU of 7myn by Molmil
Cryo-EM Structure of p110alpha in complex with p85alpha
Descriptor: Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Liu, X, Yang, S, Hart, J.R, Xu, Y, Zou, X, Zhang, H, Zhou, Q, Xia, T, Zhang, Y, Yang, D, Wang, M.-W, Vogt, P.K.
Deposit date:2021-05-21
Release date:2021-11-10
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Cryo-EM structures of PI3K alpha reveal conformational changes during inhibition and activation.
Proc.Natl.Acad.Sci.USA, 118, 2021
7MYO
DownloadVisualize
BU of 7myo by Molmil
Cryo-EM structure of p110alpha in complex with p85alpha inhibited by BYL-719
Descriptor: (2S)-N~1~-{4-methyl-5-[2-(1,1,1-trifluoro-2-methylpropan-2-yl)pyridin-4-yl]-1,3-thiazol-2-yl}pyrrolidine-1,2-dicarboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Liu, X, Yang, S, Hart, J.R, Xu, Y, Zou, X, Zhang, H, Zhou, Q, Xia, T, Zhang, Y, Yang, D, Wang, M.-W, Vogt, P.K.
Deposit date:2021-05-21
Release date:2021-11-10
Last modified:2021-11-24
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Cryo-EM structures of PI3K alpha reveal conformational changes during inhibition and activation.
Proc.Natl.Acad.Sci.USA, 118, 2021
1Q2K
DownloadVisualize
BU of 1q2k by Molmil
Solution structure of BmBKTx1 a new potassium channel blocker from the Chinese Scorpion Buthus martensi Karsch
Descriptor: Neurotoxin BmK37
Authors:Cai, Z, Xu, C, Xu, Y, Lu, W, Chi, C.W, Shi, Y, Wu, J.
Deposit date:2003-07-25
Release date:2003-09-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of BmBKTx1, a New BK(Ca)(1) Channel Blocker from the Chinese Scorpion Buthus martensi Karsch(,).
Biochemistry, 43, 2004

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon