Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6YY4
DownloadVisualize
BU of 6yy4 by Molmil
Parallel 17-mer DNA G-quadruplex
Descriptor: DNA (5'-D(*GP*GP*GP*TP*GP*GP*GP*AP*AP*GP*GP*GP*TP*GP*GP*GP*A)-3')
Authors:Srb, P, Curtis, C, Veverka, V.
Deposit date:2020-05-04
Release date:2021-01-20
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Overlapping but distinct: a new model for G-quadruplex biochemical specificity.
Nucleic Acids Res., 49, 2021
8R6T
DownloadVisualize
BU of 8r6t by Molmil
NMR solution structure of thyropin IrThy-Cd from the hard tick Ixodes ricinus
Descriptor: Putative two thyropin protein (Fragment)
Authors:Srb, P, Veverka, V, Matouskova, Z, Orsaghova, K, Mares, M.
Deposit date:2023-11-23
Release date:2024-02-28
Last modified:2024-03-06
Method:SOLUTION NMR
Cite:An Unusual Two-Domain Thyropin from Tick Saliva: NMR Solution Structure and Highly Selective Inhibition of Cysteine Cathepsins Modulated by Glycosaminoglycans.
Int J Mol Sci, 25, 2024
6FVC
DownloadVisualize
BU of 6fvc by Molmil
Protein environment affects the water-tryptophan binding mode. Molecular dynamics simulations of Engrailed homeodomain mutants
Descriptor: Segmentation polarity homeobox protein engrailed
Authors:Trosanova, Z, Zachrdla, M, Jansen, S, Srb, P, Zidek, L, Kozelka, J.
Deposit date:2018-03-02
Release date:2019-04-03
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants.
Phys Chem Chem Phys, 20, 2018
2F76
DownloadVisualize
BU of 2f76 by Molmil
Solution structure of the M-PMV wild type matrix protein (p10)
Descriptor: Core protein p10
Authors:Vlach, J, Lipov, J, Veverka, V, Lang, J, Srb, P, Rumlova, M, Hunter, E, Ruml, T, Hrabal, R.
Deposit date:2005-11-30
Release date:2006-12-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:D-retrovirus morphogenetic switch driven by the targeting signal accessibility to Tctex-1 of dynein.
Proc.Natl.Acad.Sci.USA, 105, 2008
2F77
DownloadVisualize
BU of 2f77 by Molmil
Solution structure of the R55F mutant of M-PMV matrix protein (p10)
Descriptor: Core protein p10
Authors:Vlach, J, Lipov, J, Veverka, V, Lang, J, Srb, P, Rumlova, M, Hunter, E, Ruml, T, Hrabal, R.
Deposit date:2005-11-30
Release date:2006-12-05
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:D-retrovirus morphogenetic switch driven by the targeting signal accessibility to Tctex-1 of dynein.
Proc.Natl.Acad.Sci.USA, 105, 2008
7OMK
DownloadVisualize
BU of 7omk by Molmil
The NMR structure of the Zf-GRF domains from the mouse Endonuclease VIII-LIKE 3 (mNEIL3)
Descriptor: Endonuclease 8-like 3
Authors:Dinesh, D.C, Huskova, A, Srb, P, Veverka, V, Silhan, J.
Deposit date:2021-05-24
Release date:2022-06-01
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Model of abasic site DNA cross-link repair; from the architecture of NEIL3 DNA binding domains to the X-structure model.
Nucleic Acids Res., 50, 2022
6TRJ
DownloadVisualize
BU of 6trj by Molmil
LEDGF/p75 IBD dimer
Descriptor: PC4 and SFRS1-interacting protein
Authors:Kugler, M, Brynda, J.
Deposit date:2019-12-19
Release date:2020-09-09
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Fine-tuning of the LEDGF/p75 interaction network by dimerization
Structure
5YI9
DownloadVisualize
BU of 5yi9 by Molmil
Solution structure of the LEDGF/p75 IBD - JPO2 (aa 56-91) complex
Descriptor: PC4 and SFRS1-interacting protein,Cell division cycle-associated 7-like protein
Authors:Veverka, V.
Deposit date:2017-10-03
Release date:2018-08-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Affinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6TVM
DownloadVisualize
BU of 6tvm by Molmil
LEDGF/p75 dimer (residues 345-467)
Descriptor: PC4 and SFRS1-interacting protein
Authors:Lux, V, Veverka, V.
Deposit date:2020-01-10
Release date:2020-09-09
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Molecular Mechanism of LEDGF/p75 Dimerization.
Structure, 28, 2020
4NC7
DownloadVisualize
BU of 4nc7 by Molmil
N-terminal domain of delta-subunit of RNA polymerase complexed with I3C and nickel ions
Descriptor: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, DNA-directed RNA polymerase subunit delta, NICKEL (II) ION
Authors:Demo, G, Papouskova, V, Komarek, J, Sanderova, H, Rabatinova, A, Krasny, L, Zidek, L, Sklenar, V, Wimmerova, M.
Deposit date:2013-10-24
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase.
J.Struct.Biol., 187, 2014
4NC8
DownloadVisualize
BU of 4nc8 by Molmil
N-terminal domain of delta-subunit of RNA polymerase complexed with nickel ions
Descriptor: DNA-directed RNA polymerase subunit delta, NICKEL (II) ION
Authors:Demo, G, Papouskova, V, Komarek, J, Sanderova, H, Rabatinova, A, Krasny, L, Zidek, L, Sklenar, V, Wimmerova, M.
Deposit date:2013-10-24
Release date:2014-07-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase.
J.Struct.Biol., 187, 2014
6RFM
DownloadVisualize
BU of 6rfm by Molmil
Bordetella pertussis adenylate cyclase toxin transmembrane segment 411-490 in DPC micelles
Descriptor: Bifunctional hemolysin/adenylate cyclase
Authors:Masin, J, Bumba, L, Veverka, V.
Deposit date:2019-04-15
Release date:2020-05-13
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Negative charge of the AC-to-Hly linking segment modulates calcium-dependent membrane activities of Bordetella adenylate cyclase toxin.
Biochim Biophys Acta Biomembr, 1862, 2020
6R0J
DownloadVisualize
BU of 6r0j by Molmil
The N-terminal domain of rhomboid protease YqgP
Descriptor: Rhomboid family serine protease
Authors:Began, J, Strisovsky, K, Veverka, V.
Deposit date:2019-03-13
Release date:2020-01-08
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Rhomboid intramembrane protease YqgP licenses bacterial membrane protein quality control as adaptor of FtsH AAA protease.
Embo J., 39, 2020
6EMR
DownloadVisualize
BU of 6emr by Molmil
Solution structure of the LEDGF/p75 IBD - IWS1 (aa 446-548) complex
Descriptor: PC4 and SFRS1-interacting protein,Protein IWS1 homolog
Authors:Veverka, V.
Deposit date:2017-10-03
Release date:2018-07-25
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Affinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6EMP
DownloadVisualize
BU of 6emp by Molmil
Solution structure of the LEDGF/p75 IBD - POGZ (aa 1370-1404) complex
Descriptor: PC4 and SFRS1-interacting protein,Pogo transposable element with ZNF domain
Authors:Veverka, V.
Deposit date:2017-10-03
Release date:2018-07-25
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Affinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6EMO
DownloadVisualize
BU of 6emo by Molmil
Solution structure of the LEDGF/p75 IBD - JPO2 (aa 1-32) complex
Descriptor: PC4 and SFRS1-interacting protein,LEDGF/p75 IBD-JPO2 M1
Authors:Veverka, V.
Deposit date:2017-10-03
Release date:2018-07-25
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Affinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6EMQ
DownloadVisualize
BU of 6emq by Molmil
Solution structure of the LEDGF/p75 IBD - MLL1 (aa 111-160) complex
Descriptor: PC4 and SFRS1-interacting protein,Histone-lysine N-methyltransferase 2A
Authors:Veverka, V.
Deposit date:2017-10-03
Release date:2018-08-01
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Affinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7OYN
DownloadVisualize
BU of 7oyn by Molmil
Carbonic anhydrase II in complex with Hit3 (MH57)
Descriptor: Carbonic anhydrase 2, Hit3 (MH57), ZINC ION
Authors:Kugler, M, Brynda, J, Rezacova, P.
Deposit date:2021-06-24
Release date:2023-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYR
DownloadVisualize
BU of 7oyr by Molmil
Carbonic anhydrase II in complex with Hit3-t4 (MH181)
Descriptor: Carbonic anhydrase 2, Hit3-t4 (MH181), ZINC ION
Authors:Kugler, M, Brynda, J, Rezacova, P.
Deposit date:2021-06-24
Release date:2023-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYP
DownloadVisualize
BU of 7oyp by Molmil
Carbonic anhydrase II in complex with Hit3-t1 (MH172)
Descriptor: (2S)-3-oxidanyl-2-[2-[(4-sulfamoylphenyl)methoxyamino]ethanoylamino]propanamide, 4-methylbenzenesulfonamide, Carbonic anhydrase 2, ...
Authors:Kugler, M, Brynda, J, Rezacova, P.
Deposit date:2021-06-24
Release date:2023-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYQ
DownloadVisualize
BU of 7oyq by Molmil
Carbonic anhydrase II in complex with Hit3-t2 (MH174)
Descriptor: Carbonic anhydrase 2, Hit3-t2 (MH174), ZINC ION
Authors:Kugler, M, Brynda, J, Rezacova, P.
Deposit date:2021-06-24
Release date:2023-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYM
DownloadVisualize
BU of 7oym by Molmil
Carbonic anhydrase II in complex with Hit2 (MH65)
Descriptor: Carbonic anhydrase 2, Hit2 (MH65), ZINC ION
Authors:Kugler, M, Brynda, J, Rezacova, P.
Deposit date:2021-06-24
Release date:2023-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYO
DownloadVisualize
BU of 7oyo by Molmil
Carbonic anhydrase II in complex with Hit4 (MH70)
Descriptor: Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ZINC ION, ...
Authors:Kugler, M, Brynda, J, Rezacova, P.
Deposit date:2021-06-24
Release date:2023-01-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
8CBQ
DownloadVisualize
BU of 8cbq by Molmil
structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome
Descriptor: Histone H2A, Histone H2B 1.1, Histone H3, ...
Authors:Koutna, E, Kouba, T, Novacek, J, Veverka, V.
Deposit date:2023-01-25
Release date:2023-09-06
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Multivalency of nucleosome recognition by LEDGF.
Nucleic Acids Res., 51, 2023
8CBN
DownloadVisualize
BU of 8cbn by Molmil
structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome
Descriptor: Histone H2A, Histone H2B 1.1, Histone H3, ...
Authors:Koutna, E, Kouba, T, Novacek, J, Veverka, V.
Deposit date:2023-01-25
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Multivalency of nucleosome recognition by LEDGF.
Nucleic Acids Res., 51, 2023

 

12>

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon