Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4EO7
DownloadVisualize
BU of 4eo7 by Molmil
Crystal structure of the TIR domain of human myeloid differentiation primary response protein 88.
Descriptor: MAGNESIUM ION, Myeloid differentiation primary response protein MyD88
Authors:Snyder, G.A, Cirl, C, Jiang, J.S, Chen, P, Smith, T, Xiao, T.S.
Deposit date:2012-04-13
Release date:2013-04-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.449 Å)
Cite:Molecular mechanisms for the subversion of MyD88 signaling by TcpC from virulent uropathogenic Escherichia coli.
Proc.Natl.Acad.Sci.USA, 110, 2013
4LQC
DownloadVisualize
BU of 4lqc by Molmil
The crystal structures of the Brucella protein TcpB and the TLR adaptor protein TIRAP show structural differences in microbial TIR mimicry.
Descriptor: TcpB
Authors:Snyder, G.A, Smith, P, Fresquez, T, Cirl, C, Jiang, J, Snyder, N, Luchetti, T, Miethke, T, Xiao, T.S.
Deposit date:2013-07-17
Release date:2013-12-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the Toll/Interleukin-1 receptor (TIR) domains from the Brucella protein TcpB and host adaptor TIRAP reveal mechanisms of molecular mimicry.
J.Biol.Chem., 289, 2014
4LQD
DownloadVisualize
BU of 4lqd by Molmil
The crystal structures of the Brucella protein TcpB and the TLR adaptor protein TIRAP show structural differences in microbial TIR mimicry
Descriptor: GLYCEROL, Toll/interleukin-1 receptor domain-containing adapter protein
Authors:Snyder, G.A, Smith, P, Jiang, J, Xiao, T.S.
Deposit date:2013-07-17
Release date:2013-12-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.451 Å)
Cite:Crystal structures of the Toll/Interleukin-1 receptor (TIR) domains from the Brucella protein TcpB and host adaptor TIRAP reveal mechanisms of molecular mimicry.
J.Biol.Chem., 289, 2014
1XPH
DownloadVisualize
BU of 1xph by Molmil
Structure of DC-SIGNR and a portion of repeat domain 8
Descriptor: CALCIUM ION, CD209 antigen-like protein 1
Authors:Snyder, G.A, Colonna, M, Sun, P.D.
Deposit date:2004-10-08
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:The structure of DC-SIGNR with a portion of its repeat domain lends insights to modeling of the receptor tetramer.
J.Mol.Biol., 347, 2005
4DOM
DownloadVisualize
BU of 4dom by Molmil
Crystal Structure of the TIR-domain of Human Myeloid Differentiation Primary Response protein (MyD88)
Descriptor: Myeloid differentiation primary response protein MyD88
Authors:Jiang, J.S, Snyder, G.A, Xiao, T.
Deposit date:2012-02-09
Release date:2013-04-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Molecular mechanisms for the subversion of MyD88 signaling by TcpC from virulent uropathogenic Escherichia coli.
Proc.Natl.Acad.Sci.USA, 110, 2013
2DLI
DownloadVisualize
BU of 2dli by Molmil
KILLER IMMUNOGLOBULIN RECEPTOR 2DL2,TRIGONAL FORM
Descriptor: PROTEIN (MHC CLASS I NK CELL RECEPTOR PRECURSOR)
Authors:Sun, P.D, Snyder, G.A.
Deposit date:1999-03-08
Release date:2000-01-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the HLA-Cw3 allotype-specific killer cell inhibitory receptor KIR2DL2
Proc.Natl.Acad.Sci.USA, 96, 1999
8G83
DownloadVisualize
BU of 8g83 by Molmil
Structure of NAD+ consuming protein Acinetobacter baumannii TIR domain
Descriptor: NAD(+) hydrolase AbTIR
Authors:Klontz, E.H, Wang, Y, Glendening, G, Carr, J, Tsibouris, T, Buddula, S, Nallar, S, Soares, A, Snyder, G.A.
Deposit date:2023-02-17
Release date:2023-10-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:The structure of NAD + consuming protein Acinetobacter baumannii TIR domain shows unique kinetics and conformations.
J.Biol.Chem., 299, 2023
4IXJ
DownloadVisualize
BU of 4ixj by Molmil
The structure of PilJ, a Type IV pilin from Clostridium difficile
Descriptor: Fimbrial protein (Pilin), GLYCEROL, ZINC ION
Authors:Piepenbrink, K.H, Sundberg, E.J, Snyder, G.A.
Deposit date:2013-01-25
Release date:2014-01-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.983 Å)
Cite:Structure of Clostridium difficile PilJ Exhibits Unprecedented Divergence from Known Type IV Pilins.
J.Biol.Chem., 289, 2014
4NUZ
DownloadVisualize
BU of 4nuz by Molmil
Crystal structure of a glycosynthase mutant (D233Q) of EndoS, an endo-beta-N-acetyl-glucosaminidase from Streptococcus pyogenes
Descriptor: CALCIUM ION, Endo-beta-N-acetylglucosaminidase F2
Authors:Trastoy, B, Guenther, S, Snyder, G.A, Sundberg, E.J.
Deposit date:2013-12-04
Release date:2014-04-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.905 Å)
Cite:Crystal structure of Streptococcus pyogenes EndoS, an immunomodulatory endoglycosidase specific for human IgG antibodies.
Proc.Natl.Acad.Sci.USA, 111, 2014
4NUY
DownloadVisualize
BU of 4nuy by Molmil
Crystal structure of EndoS, an endo-beta-N-acetyl-glucosaminidase from Streptococcus pyogenes
Descriptor: CALCIUM ION, Endo-beta-N-acetylglucosaminidase F2
Authors:Trastoy, B, Guenther, S, Snyder, G.A, Sundberg, E.J.
Deposit date:2013-12-04
Release date:2014-04-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.609 Å)
Cite:Crystal structure of Streptococcus pyogenes EndoS, an immunomodulatory endoglycosidase specific for human IgG antibodies.
Proc.Natl.Acad.Sci.USA, 111, 2014
2DL2
DownloadVisualize
BU of 2dl2 by Molmil
KILLER IMMUNOGLOBULIN RECEPTOR 2DL2
Descriptor: PROTEIN (MHC CLASS I NK CELL RECEPTOR PRECURSOR (P58 NATURAL KILLER CELL RECEPTOR CLONE CL-43))
Authors:Sun, P, Snyder, G.
Deposit date:1999-03-08
Release date:1999-03-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the HLA-Cw3 allotype-specific killer cell inhibitory receptor KIR2DL2
Proc.Natl.Acad.Sci.USA, 96, 1999
9DTT
DownloadVisualize
BU of 9dtt by Molmil
Cryo-EM structure of DENV2 NS5 in complex with Stem Loop A (SLA)
Descriptor: RNA-directed RNA polymerase NS5, ZINC ION, stem loop A
Authors:Obi, J.O, Fields, J.K, Snyder, A.G, Deredge, D.J.
Deposit date:2024-10-01
Release date:2024-10-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Dynamics of the Dengue Virus Non-structural 5 (NS5) Interactions with Viral Synthesis Promoter Stem Loop A (SLA)
To Be Published
6O1C
DownloadVisualize
BU of 6o1c by Molmil
Alpha-L-fucosidase AlfC D200A mutant in complex with 4-nitrophenyl-a-L-fucopyranoside substrate
Descriptor: 4-nitrophenyl 6-deoxy-alpha-L-galactopyranoside, AlfC
Authors:Klontz, E.H, Sundberg, E.J.
Deposit date:2019-02-19
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and dynamics of an alpha-fucosidase reveal a mechanism for highly efficient IgG transfucosylation.
Nat Commun, 11, 2020
6O1J
DownloadVisualize
BU of 6o1j by Molmil
Alpha-L-fucosidase AlfC fucosyltransferase mutant N243A
Descriptor: AlfC, beta-L-fucopyranose
Authors:Klontz, E.H, Sundberg, E.J.
Deposit date:2019-02-20
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and dynamics of an alpha-fucosidase reveal a mechanism for highly efficient IgG transfucosylation.
Nat Commun, 11, 2020
6O18
DownloadVisualize
BU of 6o18 by Molmil
Unliganded alpha-L-fucosidase AlfC from Lactobacillus casei
Descriptor: AlfC
Authors:Klontz, E.H, Sundberg, E.J.
Deposit date:2019-02-18
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and dynamics of an alpha-fucosidase reveal a mechanism for highly efficient IgG transfucosylation.
Nat Commun, 11, 2020
6O1A
DownloadVisualize
BU of 6o1a by Molmil
Alpha-L-fucosidase AlfC from Lactobacillus casei in complex with alpha-L-fucose product
Descriptor: AlfC, beta-L-fucopyranose
Authors:Klontz, E.H, Sundberg, E.J.
Deposit date:2019-02-18
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and dynamics of an alpha-fucosidase reveal a mechanism for highly efficient IgG transfucosylation.
Nat Commun, 11, 2020
6O1I
DownloadVisualize
BU of 6o1i by Molmil
Alpha-L-fucosidase AlfC fucosyltransferase mutant E274A
Descriptor: AlfC
Authors:Klontz, E.H, Sundberg, E.J.
Deposit date:2019-02-20
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:Structure and dynamics of an alpha-fucosidase reveal a mechanism for highly efficient IgG transfucosylation.
Nat Commun, 11, 2020
6OHE
DownloadVisualize
BU of 6ohe by Molmil
Alpha-L-fucosidase AlfC D200A in complex with Fuca(1,6)GlcNAc
Descriptor: AlfC, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Klontz, E.H, Sundberg, E.J.
Deposit date:2019-04-05
Release date:2020-04-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structure and dynamics of an alpha-fucosidase reveal a mechanism for highly efficient IgG transfucosylation.
Nat Commun, 11, 2020
1EFX
DownloadVisualize
BU of 1efx by Molmil
STRUCTURE OF A COMPLEX BETWEEN THE HUMAN NATURAL KILLER CELL RECEPTOR KIR2DL2 AND A CLASS I MHC LIGAND HLA-CW3
Descriptor: BETA-2-MICROGLOBULIN, HLA-CW3 (HEAVY CHAIN), NATURAL KILLER CELL RECEPTOR KIR2DL2, ...
Authors:Boyington, J.C, Motyka, S.A, Schuck, P, Brooks, A.G, Sun, P.D.
Deposit date:2000-02-10
Release date:2000-06-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of an NK cell immunoglobulin-like receptor in complex with its class I MHC ligand.
Nature, 405, 2000

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon