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7PCU
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BU of 7pcu by Molmil
Crystal structure of YTHDF1 YTH domain in complex with ebselen
分子名称: N-phenyl-2-selanylbenzamide, YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Quattrone, A, Provenzani, A, Lolli, G.
登録日2021-08-04
公開日2022-12-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6 -Methyladenosine-Modified RNAs.
Acs Pharmacol Transl Sci, 5, 2022
7QL7
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BU of 7ql7 by Molmil
Crystal structure of YTHDF1 YTH domain in complex with the ebsulfur derivative compound 9
分子名称: 1,2-ETHANEDIOL, THIOCYANATE ION, YTH domain-containing family protein 1, ...
著者Dalle Vedove, A, Cazzanelli, G, Quattrone, A, Provenzani, A, Lolli, G.
登録日2021-12-19
公開日2022-11-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6 -Methyladenosine-Modified RNAs.
Acs Pharmacol Transl Sci, 5, 2022
7QKN
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BU of 7qkn by Molmil
Crystal structure of YTHDF1 YTH domain in complex with the ebsulfur derivative compound 7
分子名称: 1,2-ETHANEDIOL, THIOCYANATE ION, YTH domain-containing family protein 1, ...
著者Dalle Vedove, A, Cazzanelli, G, Quattrone, A, Provenzani, A, Lolli, G.
登録日2021-12-18
公開日2022-11-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6 -Methyladenosine-Modified RNAs.
Acs Pharmacol Transl Sci, 5, 2022
1S4I
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BU of 1s4i by Molmil
Crystal structure of a SOD-like protein from Bacillus subtilis
分子名称: CHLORIDE ION, ZINC ION, superoxide dismutase-like protein yojM
著者Banci, L, Bertini, I, Calderone, V, Cramaro, F, Del Conte, R, Fantoni, A, Mangani, S, Quattrone, A, Viezzoli, M.S.
登録日2004-01-16
公開日2005-04-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A prokaryotic superoxide dismutase paralog lacking two Cu ligands: from largely unstructured in solution to ordered in the crystal.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1U3N
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BU of 1u3n by Molmil
A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis
分子名称: Hypothetical superoxide dismutase-like protein yojM
著者Banci, L, Bertini, I, Calderone, V, Cramaro, F, Del Conte, R, Fantoni, A, Mangani, S, Quattrone, A, Viezzoli, M.S.
登録日2004-07-22
公開日2005-05-03
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献A prokaryotic superoxide dismutase paralog lacking two Cu ligands: from largely unstructured in solution to ordered in the crystal.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1RK9
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BU of 1rk9 by Molmil
Solution Structure of Human alpha-Parvalbumin (Minimized Average Structure)
分子名称: CALCIUM ION, Parvalbumin alpha
著者Baig, I, Bertini, I, Del Bianco, C, Gupta, Y.K, Lee, Y.-M, Luchinat, C, Quattrone, A, Structural Proteomics in Europe (SPINE)
登録日2003-11-21
公開日2004-06-08
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Paramagnetism-based refinement strategy for the solution structure of human alpha-parvalbumin
Biochemistry, 43, 2004
1RJV
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BU of 1rjv by Molmil
Solution Structure of Human alpha-Parvalbumin refined with a paramagnetism-based strategy
分子名称: CALCIUM ION, Parvalbumin alpha
著者Baig, I, Bertini, I, Del Bianco, C, Gupta, Y.K, Lee, Y.M, Luchinat, C, Quattrone, A, Structural Proteomics in Europe (SPINE)
登録日2003-11-20
公開日2004-05-25
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Paramagnetism-Based Refinement Strategy for the Solution Structure of Human alpha-Parvalbumin.
Biochemistry, 43, 2004
1TTX
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BU of 1ttx by Molmil
Solution Structure of human beta parvalbumin (oncomodulin) refined with a paramagnetism based strategy
分子名称: CALCIUM ION, Oncomodulin
著者Babini, E, Bertini, I, Capozzi, F, Del Bianco, C, Hollender, D, Kiss, T, Luchinat, C, Quattrone, A, Structural Proteomics in Europe (SPINE)
登録日2004-06-23
公開日2005-01-18
最終更新日2021-11-10
実験手法SOLUTION NMR
主引用文献Solution Structure of Human beta-Parvalbumin and Structural Comparison with Its Paralog alpha-Parvalbumin and with Their Rat Orthologs(,)
Biochemistry, 43, 2004
6I9R
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BU of 6i9r by Molmil
Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin
分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ...
著者Modelska, A, Aibara, S, Amunts, A.
登録日2018-11-25
公開日2020-07-08
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Inhibition of mitochondrial translation suppresses glioblastoma stem cell growth.
Cell Rep, 35, 2021
8C6L
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BU of 8c6l by Molmil
Human protein kinase CK2 alpha in complex with CK2-TN01
分子名称: 1,2-ETHANEDIOL, 5-azanyl-3-[(~{Z})-1-cyano-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]-3~{H}-pyrazole-4-carbonitrile, Casein kinase II subunit alpha, ...
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2023-01-12
公開日2024-04-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Switching off CK2-mediated activation of survivin offers new therapeutic opportunities in neuroblastoma
to be published
8C6M
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BU of 8c6m by Molmil
Human protein kinase CK2 alpha in complex with CK2-TN02
分子名称: (5~{Z})-5-[(3-methoxy-4-oxidanyl-phenyl)methylidene]-1,3-thiazolidine-2,4-dione, Casein kinase II subunit alpha, SULFATE ION
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2023-01-12
公開日2024-04-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Switching off CK2-mediated activation of survivin offers new therapeutic opportunities in neuroblastoma
to be published
8C6N
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BU of 8c6n by Molmil
Human protein kinase CK2 alpha in complex with CK2-TN03
分子名称: (2~{Z},5~{Z})-5-[(4-methoxy-3-oxidanyl-phenyl)methylidene]-2-phenylimino-1,3-thiazolidin-4-one, Casein kinase II subunit alpha, SULFATE ION
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2023-01-12
公開日2024-04-24
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Switching off CK2-mediated activation of survivin offers new therapeutic opportunities in neuroblastoma
to be published
7YZ8
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BU of 7yz8 by Molmil
Triclinic crystal structure of YTHDF1 YTH domain (544AVV546 mutant)
分子名称: THIOCYANATE ION, YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2022-02-19
公開日2023-03-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Pliability in the m 6 A-Binding Region Extends Druggability of YTH Domains.
J.Chem.Inf.Model., 2024
7YYF
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BU of 7yyf by Molmil
Orthorombic crystal structure of YTHDF1 YTH domain (G459N mutant) form II
分子名称: YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2022-02-17
公開日2023-03-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Pliability in the m 6 A-Binding Region Extends Druggability of YTH Domains.
J.Chem.Inf.Model., 2024
7YYJ
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BU of 7yyj by Molmil
Tetragonal crystal structure of YTHDF1 YTH domain (544AVV546 mutant)
分子名称: 1,2-ETHANEDIOL, THIOCYANATE ION, YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2022-02-18
公開日2023-03-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Pliability in the m 6 A-Binding Region Extends Druggability of YTH Domains.
J.Chem.Inf.Model., 2024
7YYE
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BU of 7yye by Molmil
Orthorombic crystal structure of YTHDF1 YTH domain (G459N mutant) form I
分子名称: 1,2-ETHANEDIOL, MALONIC ACID, YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2022-02-17
公開日2023-03-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Pliability in the m 6 A-Binding Region Extends Druggability of YTH Domains.
J.Chem.Inf.Model., 2024
1XTM
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BU of 1xtm by Molmil
Crystal structure of the double mutant Y88H-P104H of a SOD-like protein from Bacillus subtilis.
分子名称: COPPER (II) ION, Hypothetical superoxide dismutase-like protein yojM, ZINC ION
著者Calderone, V, Mangani, S, Banci, L, Benvenuti, M, Bertini, I, Fantoni, A, Viezzoli, M.S.
登録日2004-10-22
公開日2005-10-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献From an Inactive Prokaryotic SOD Homologue to an Active Protein through Site-Directed Mutagenesis.
J.Am.Chem.Soc., 127, 2005
1XTL
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BU of 1xtl by Molmil
Crystal structure of P104H mutant of SOD-like protein from Bacillus subtilis.
分子名称: COPPER (II) ION, Hypothetical superoxide dismutase-like protein yojM, ZINC ION
著者Calderone, V, Mangani, S, Banci, L, Benvenuti, M, Bertini, I, Viezzoli, M.S, Fantoni, A.
登録日2004-10-22
公開日2005-10-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献From an Inactive Prokaryotic SOD Homologue to an Active Protein through Site-Directed Mutagenesis.
J.Am.Chem.Soc., 127, 2005

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