7QA9
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![BU of 7qa9 by Molmil](/molmil-images/mine/7qa9) | 10bp DNA/DNA duplex | Descriptor: | DNA (5'-D(*CP*CP*AP*TP*TP*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3') | Authors: | Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C. | Deposit date: | 2021-11-16 | Release date: | 2022-11-16 | Last modified: | 2024-06-19 | Method: | SOLUTION NMR | Cite: | 4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA. Angew.Chem.Int.Ed.Engl., 61, 2022
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8C7B
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![BU of 8c7b by Molmil](/molmil-images/mine/8c7b) | |
8C7A
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![BU of 8c7a by Molmil](/molmil-images/mine/8c7a) | |
6R8E
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![BU of 6r8e by Molmil](/molmil-images/mine/6r8e) | SC14 G-hairpin | Descriptor: | DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') | Authors: | Lenarcic Zivkovic, M, Trantirek, L, Plavec, J. | Deposit date: | 2019-04-01 | Release date: | 2021-02-03 | Last modified: | 2024-06-19 | Method: | SOLUTION NMR | Cite: | Insight into formation propensity of pseudocircular DNA G-hairpins. Nucleic Acids Res., 49, 2021
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7NWD
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![BU of 7nwd by Molmil](/molmil-images/mine/7nwd) | Three-quartet c-kit2 G-quadruplex stabilized by a pyrene conjugate | Descriptor: | POTASSIUM ION, c-kit2_py1 | Authors: | Peterkova, K, Durnik, I, Marek, R, Plavec, J, Podbevsek, P. | Deposit date: | 2021-03-16 | Release date: | 2021-08-04 | Last modified: | 2024-06-19 | Method: | SOLUTION NMR | Cite: | c-kit2 G-quadruplex stabilized via a covalent probe: exploring G-quartet asymmetry. Nucleic Acids Res., 49, 2021
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7W0V
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![BU of 7w0v by Molmil](/molmil-images/mine/7w0v) | C4'-SCF3-DT modifeid DNA-DNA duplex | Descriptor: | DNA (5'-D(*CP*CP*AP*TP*(DSW)P*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3') | Authors: | Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C. | Deposit date: | 2021-11-18 | Release date: | 2022-11-16 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | 4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA. Angew.Chem.Int.Ed.Engl., 61, 2022
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1XV6
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1U64
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![BU of 1u64 by Molmil](/molmil-images/mine/1u64) | The Solution Structure of d(G3T4G4)2 | Descriptor: | 5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Authors: | Sket, P, Crnugelj, M, Plavec, J. | Deposit date: | 2004-07-29 | Release date: | 2004-10-26 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | d(G3T4G4) forms unusual dimeric G-quadruplex structure with the same general fold in the presence of K+, Na+ or NH4+ ions. Bioorg.Med.Chem., 12, 2004
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6GIR
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![BU of 6gir by Molmil](/molmil-images/mine/6gir) | Arabidopsis thaliana cytosolic seryl-tRNA synthetase | Descriptor: | Serine--tRNA ligase, cytoplasmic | Authors: | Kekez, I, Kekez, M, Rokov-Plavec, J, Matkovic-Calogovic, D. | Deposit date: | 2018-05-15 | Release date: | 2019-01-02 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.343 Å) | Cite: | Arabidopsis seryl-tRNA synthetase: the first crystal structure and novel protein interactor of plant aminoacyl-tRNA synthetase. FEBS J., 286, 2019
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7Z9L
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![BU of 7z9l by Molmil](/molmil-images/mine/7z9l) | Phen-DC3 intercalation causes hybrid-to-antiparallel transformation of human telomeric DNA G-quadruplex | Descriptor: | DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N2,N9-bis(1-methylquinolin-3-yl)-1,10-phenanthroline-2,9-dicarboxamide | Authors: | Ghosh, A, Trajkovski, M, Teulade-Fichou, M.P, Gabelica, V, Plavec, J. | Deposit date: | 2022-03-21 | Release date: | 2022-08-31 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Phen-DC 3 Induces Refolding of Human Telomeric DNA into a Chair-Type Antiparallel G-Quadruplex through Ligand Intercalation. Angew.Chem.Int.Ed.Engl., 61, 2022
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1LVS
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![BU of 1lvs by Molmil](/molmil-images/mine/1lvs) | THE SOLUTION STRUCTURE OF D(G4T4G3)2 | Descriptor: | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*G)-3' | Authors: | Crnugelj, M, Hud, N.V, Plavec, J. | Deposit date: | 2002-05-29 | Release date: | 2002-07-24 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold. J.Mol.Biol., 320, 2002
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8Q5Q
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![BU of 8q5q by Molmil](/molmil-images/mine/8q5q) | d(ATTTC)3 dimeric structure | Descriptor: | DNA (5'-D(*AP*TP*TP*TP*(DNR)P*AP*TP*TP*TP*CP*AP*TP*TP*TP*C)-3') | Authors: | Trajkovski, M, Pastore, A, Plavec, J. | Deposit date: | 2023-08-09 | Release date: | 2024-02-07 | Last modified: | 2024-03-06 | Method: | SOLUTION NMR | Cite: | Dimeric structures of DNA ATTTC repeats promoted by divalent cations. Nucleic Acids Res., 52, 2024
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8PMB
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![BU of 8pmb by Molmil](/molmil-images/mine/8pmb) | |
6IA4
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![BU of 6ia4 by Molmil](/molmil-images/mine/6ia4) | |
6IA0
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![BU of 6ia0 by Molmil](/molmil-images/mine/6ia0) | |
8P1Z
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![BU of 8p1z by Molmil](/molmil-images/mine/8p1z) | |
8P1Y
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![BU of 8p1y by Molmil](/molmil-images/mine/8p1y) | |
6GZN
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![BU of 6gzn by Molmil](/molmil-images/mine/6gzn) | |
6ZRM
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![BU of 6zrm by Molmil](/molmil-images/mine/6zrm) | G-quadruplex with a G-A bulge | Descriptor: | DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3') | Authors: | Lenarcic Zivkovic, M, Plavec, J. | Deposit date: | 2020-07-13 | Release date: | 2021-05-26 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structure of a DNA G-Quadruplex Related to Osteoporosis with a G-A Bulge Forming a Pseudo-loop . Molecules, 25, 2020
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6SX6
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![BU of 6sx6 by Molmil](/molmil-images/mine/6sx6) | Guanine-rich oligonucleotide with 5'-GC end form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pairs | Descriptor: | GCn | Authors: | Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P. | Deposit date: | 2019-09-25 | Release date: | 2020-07-22 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly. Nucleic Acids Res., 48, 2020
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8JIC
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6SYK
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![BU of 6syk by Molmil](/molmil-images/mine/6syk) | Guanine-rich oligonucleotide with 5'- and 3'-GC ends form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pair | Descriptor: | GCnCG | Authors: | Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P. | Deposit date: | 2019-09-30 | Release date: | 2020-07-29 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly. Nucleic Acids Res., 48, 2020
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8JIH
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6SX3
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![BU of 6sx3 by Molmil](/molmil-images/mine/6sx3) | Intercalation of heterocyclic ligand between quartets in G-rich tetrahelical structure | Descriptor: | VK2, ~{N}2,~{N}6-bis(1-methylquinolin-1-ium-3-yl)pyridine-2,6-dicarboxamide | Authors: | Kotar, A, Kocman, V, Plavec, J. | Deposit date: | 2019-09-24 | Release date: | 2019-12-11 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Intercalation of a Heterocyclic Ligand between Quartets in a G-Rich Tetrahelical Structure. Chemistry, 26, 2020
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6TR2
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![BU of 6tr2 by Molmil](/molmil-images/mine/6tr2) | |