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6RRL
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BU of 6rrl by Molmil
Solution NMR structure of the peptide 3967 from medicinal leech Hirudo medicinalis in dodecylphosphocholine micelles
分子名称: peptide 3967
著者Nadezhdin, K.D, Grafskaia, E.N, Arseniev, A.S, Lazarev, V.N.
登録日2019-05-20
公開日2019-07-24
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Medicinal leech antimicrobial peptides lacking toxicity represent a promising alternative strategy to combat antibiotic-resistant pathogens.
Eur.J.Med.Chem., 180, 2019
6RRO
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BU of 6rro by Molmil
Solution NMR structure of the peptide 536_2 from medicinal leech Hirudo medicinalis in dodecylphosphocholine micelles
分子名称: peptide 536_2
著者Nadezhdin, K.D, Grafskaia, E.N, Arseniev, A.S, Lazarev, V.N.
登録日2019-05-20
公開日2019-07-24
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Medicinal leech antimicrobial peptides lacking toxicity represent a promising alternative strategy to combat antibiotic-resistant pathogens.
Eur.J.Med.Chem., 180, 2019
9B33
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BU of 9b33 by Molmil
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
分子名称: CALCIUM ION, Concanavalin V, ZINC ION
著者Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
登録日2024-03-18
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (4.07 Å)
主引用文献Kainate receptor channel opening and gating mechanism
Nature, 2024
9B34
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BU of 9b34 by Molmil
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
分子名称: CALCIUM ION, Concanavalin A, ZINC ION
著者Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
登録日2024-03-18
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (3.58 Å)
主引用文献Kainate receptor channel opening and gating mechanism
Nature, 2024
9B35
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BU of 9b35 by Molmil
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
分子名称: GLUTAMIC ACID, Glutamate receptor ionotropic, kainate 2
著者Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
登録日2024-03-18
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Kainate receptor channel opening and gating mechanism
Nature, 2024
9B36
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BU of 9b36 by Molmil
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
登録日2024-03-18
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (4.29 Å)
主引用文献Kainate receptor channel opening and gating mechanism
Nature, 2024
9B37
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Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map.
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
登録日2024-03-18
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (6.66 Å)
主引用文献Kainate receptor channel opening and gating mechanism
Nature, 2024
9B38
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Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ...
著者Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
登録日2024-03-18
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献Kainate receptor channel opening and gating mechanism
Nature, 2024
9B39
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BU of 9b39 by Molmil
Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ...
著者Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
登録日2024-03-18
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (3.84 Å)
主引用文献Kainate receptor channel opening and gating mechanism
Nature, 2024
7S8B
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BU of 7s8b by Molmil
Cryo-EM structure of human TRPV6 in complex with channel blocker ruthenium red
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, ...
著者Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
登録日2021-09-17
公開日2021-11-17
実験手法ELECTRON MICROSCOPY (2.43 Å)
主引用文献Structural mechanisms of TRPV6 inhibition by ruthenium red and econazole.
Nat Commun, 12, 2021
8T1D
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BU of 8t1d by Molmil
Open-state cryo-EM structure of full-length human TRPV4 in complex with agonist 4a-PDD
分子名称: (1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate, Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera
著者Talyzina, I.A, Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
登録日2023-06-02
公開日2023-07-05
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Structure of human TRPV4 in complex with GTPase RhoA.
Nat Commun, 14, 2023
8T1E
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BU of 8t1e by Molmil
Closed-state cryo-EM structure of full-length human TRPV4 in the presence of 4a-PDD
分子名称: (2R)-2-{[(4-O-hexopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-4-{[(25R)-5beta,14beta,17beta-spirostan-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, SODIUM ION, Transient receptor potential cation channel subfamily V member 4,Enhanced green fluorescent protein, ...
著者Talyzina, I.A, Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
登録日2023-06-02
公開日2023-07-05
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献Structure of human TRPV4 in complex with GTPase RhoA.
Nat Commun, 14, 2023
8T1F
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BU of 8t1f by Molmil
Cryo-EM structure of full-length human TRPV4 in complex with antagonist HC-067047
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-methyl-1-[3-(morpholin-4-yl)propyl]-5-phenyl-N-[3-(trifluoromethyl)phenyl]-1H-pyrrole-3-carboxamide, Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera
著者Talyzina, I.A, Nadezhdin, K.D, Neuberger, A, Sobolevsky, A.I.
登録日2023-06-02
公開日2023-07-05
実験手法ELECTRON MICROSCOPY (3.49 Å)
主引用文献Structure of human TRPV4 in complex with GTPase RhoA.
Nat Commun, 14, 2023
2JWM
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BU of 2jwm by Molmil
NMR spatial srtucture of ternary complex kalata B7/Mn2+/DPC micelle
分子名称: Kalata-B7
著者Nadezhdin, K.D, Shenkarev, Z.O, Skjeldal, L, Arseniev, A.S.
登録日2007-10-16
公開日2008-03-11
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Divalent cation coordination and mode of membrane interaction in cyclotides: NMR spatial structure of ternary complex Kalata B7/Mn(2+)/DPC micelle
J.Inorg.Biochem., 102, 2008
7LR0
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BU of 7lr0 by Molmil
Structure of squirrel TRPV1 in complex with capsaicin
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide, Osm-9-like TRP channel 1, ...
著者Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I.
登録日2021-02-15
公開日2021-04-21
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.81 Å)
主引用文献Extracellular cap domain is an essential component of the TRPV1 gating mechanism.
Nat Commun, 12, 2021
7LQZ
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BU of 7lqz by Molmil
Structure of squirrel TRPV1 in complex with RTX
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Osm-9-like TRP channel 1, SODIUM ION, ...
著者Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I.
登録日2021-02-15
公開日2021-04-21
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.41 Å)
主引用文献Extracellular cap domain is an essential component of the TRPV1 gating mechanism.
Nat Commun, 12, 2021
7MIJ
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BU of 7mij by Molmil
Mouse TRPV3 in MSP2N2 nanodiscs, closed state at 4 degrees Celsius
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Transient receptor potential cation channel subfamily V member 3
著者Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I.
登録日2021-04-17
公開日2021-07-21
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY (1.98 Å)
主引用文献Structural mechanism of heat-induced opening of a temperature-sensitive TRP channel.
Nat.Struct.Mol.Biol., 28, 2021
7MIM
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BU of 7mim by Molmil
Mouse TRPV3 in cNW11 nanodiscs, closed state at 4 degrees Celsius
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Transient receptor potential cation channel subfamily V member 3
著者Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I.
登録日2021-04-17
公開日2021-07-21
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献Structural mechanism of heat-induced opening of a temperature-sensitive TRP channel.
Nat.Struct.Mol.Biol., 28, 2021
7UGG
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BU of 7ugg by Molmil
Cryo-EM structure of TRPV3 in complex with the anesthetic dyclonine
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Dyclonine, SODIUM ION, ...
著者Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I.
登録日2022-03-24
公開日2022-06-08
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.16 Å)
主引用文献Structural mechanism of TRPV3 channel inhibition by the anesthetic dyclonine.
Nat Commun, 13, 2022
1ZNU
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BU of 1znu by Molmil
Structure of cyclotide Kalata B1 in DPC micelles solution
分子名称: Kalata B1
著者Shenkarev, Z.O, Nadezhdin, K.D, Sobol, V.A, Sobol, A.G, Skjeldal, L, Arseniev, A.S.
登録日2005-05-12
公開日2006-04-25
最終更新日2020-02-05
実験手法SOLUTION NMR
主引用文献Conformation and mode of membrane interaction in cyclotides. Spatial structure of kalata B1 bound to a dodecylphosphocholine micelle.
Febs J., 273, 2006
7PL4
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BU of 7pl4 by Molmil
Structure of Insulin receptor-related receptor's transmembrane domain
分子名称: Insulin receptor-related protein beta chain
著者Bershatsky, Y.V, Nadezhdin, K.D, Bocharova, O.V, Bocharov, E.V.
登録日2021-08-28
公開日2022-09-07
実験手法SOLUTION NMR
主引用文献Structure of Insulin-like growth factor 1 receptor's transmembrane domain
To Be Published
7PH8
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BU of 7ph8 by Molmil
Structure of Insulin-like growth factor 1 receptor's transmembrane domain
分子名称: Insulin-like growth factor 1 receptor
著者Bershatsky, Y.V, Nadezhdin, K.D, Bocharova, O.V, Bocharov, E.V.
登録日2021-08-16
公開日2022-08-24
実験手法SOLUTION NMR
主引用文献Structure of Insulin-like growth factor 1 receptor's transmembrane domain
To Be Published
7PHT
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BU of 7pht by Molmil
Structure of Insulin receptor's transmembrane domain
分子名称: Isoform Long of Insulin receptor
著者Bershatsky, Y.V, Nadezhdin, K.D, Bocharova, O.V, Bocharov, E.V.
登録日2021-08-18
公開日2022-09-07
実験手法SOLUTION NMR
主引用文献Structure of Insulin receptor's transmembrane domain
To Be Published
6RSM
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BU of 6rsm by Molmil
Solution NMR structure of the peptide 12530 from medicinal leech Hirudo medicinalis in dodecylphosphocholine micelles
分子名称: peptide 12530
著者Talyzina, I.A, Nadezhdin, K.D, Grafskaia, E.N, Arseniev, A.S, Lazarev, V.N.
登録日2019-05-21
公開日2019-07-24
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Medicinal leech antimicrobial peptides lacking toxicity represent a promising alternative strategy to combat antibiotic-resistant pathogens.
Eur.J.Med.Chem., 180, 2019
8FOB
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BU of 8fob by Molmil
Cryo-EM structure of human TRPV6 in the open state
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, ...
著者Neuberger, A, Yelshanskaya, M.V, Nadezhdin, K.D, Sobolevsky, A.I.
登録日2022-12-30
公開日2023-05-24
実験手法ELECTRON MICROSCOPY (2.71 Å)
主引用文献Structural mechanism of human oncochannel TRPV6 inhibition by the natural phytoestrogen genistein.
Nat Commun, 14, 2023

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件を2024-05-22に公開中

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